RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 ITPKAP23677 461 aa7.92□□□□□ -1.14
LIMA1-205ENST00000550592 ADH7P40394 386 aa7.92□□□□□ -1.14
LIMA1-205ENST00000550592 GRIA4P48058 902 aa7.92□□□□□ -1.14
LIMA1-205ENST00000550592 FCGRTP55899 365 aa7.92□□□□□ -1.14
LIMA1-205ENST00000550592 PTPN12Q05209 780 aaKnown RBP7.92□□□□□ -1.14
LIMA1-205ENST00000550592 TBC1D8BQ0IIM8 1120 aa7.92□□□□□ -1.14
LIMA1-205ENST00000550592 NFX1Q12986 1120 aaKnown RBP7.92□□□□□ -1.14
LIMA1-205ENST00000550592 RNFT1Q5M7Z0 435 aa7.92□□□□□ -1.14
LIMA1-205ENST00000550592 C9orf131Q5VYM1 1079 aa7.92□□□□□ -1.14
LIMA1-205ENST00000550592 FAM35AQ86V20 835 aa7.92□□□□□ -1.14
LIMA1-205ENST00000550592 FCHSD1Q86WN1 690 aa7.92□□□□□ -1.14
LIMA1-205ENST00000550592 SLC16A10Q8TF71 515 aa7.92□□□□□ -1.14
LIMA1-205ENST00000550592 HHIPQ96QV1 700 aa7.92□□□□□ -1.14
LIMA1-205ENST00000550592 IGF1RP08069 1367 aa7.92□□□□□ -1.14
LIMA1-205ENST00000550592 ELOA3CA0A087WX78 387 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-205ENST00000550592 ELOA3DA6NLF2 546 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-205ENST00000550592 NEURL1BA8MQ27 555 aa7.91□□□□□ -1.14
LIMA1-205ENST00000550592 ATP11AP98196 1134 aa7.91□□□□□ -1.14
LIMA1-205ENST00000550592 RAD51AP2Q09MP3 1159 aa7.91□□□□□ -1.14
LIMA1-205ENST00000550592 ELOA3BQ3SY89 546 aa7.91□□□□□ -1.14
LIMA1-205ENST00000550592 NT5DC4Q86YG4 428 aa7.91□□□□□ -1.14
LIMA1-205ENST00000550592 ELOA3Q8NG57 546 aa7.91□□□□□ -1.14
LIMA1-205ENST00000550592 OXCT2Q9BYC2 517 aaPredicted RBP7.91□□□□□ -1.14
LIMA1-205ENST00000550592 GGA1Q9UJY5 639 aa7.91□□□□□ -1.14
LIMA1-205ENST00000550592 PPM1HQ9ULR3 514 aa7.91□□□□□ -1.14
LIMA1-205ENST00000550592 ERBB4Q15303 1308 aa7.91□□□□□ -1.14
LIMA1-205ENST00000550592 SMNDC1O75940 238 aaKnown RBP eCLIP7.9□□□□□ -1.14
LIMA1-205ENST00000550592 CPB1P15086 417 aa7.9□□□□□ -1.14
LIMA1-205ENST00000550592 EIF2AK2P19525 551 aaKnown RBP7.9□□□□□ -1.14
LIMA1-205ENST00000550592 ERCC5P28715 1186 aaPredicted RBP7.9□□□□□ -1.14
LIMA1-205ENST00000550592 SRSF11Q05519 484 aaKnown RBP7.9□□□□□ -1.14
LIMA1-205ENST00000550592 SPRED3Q2MJR0 410 aa7.9□□□□□ -1.14
LIMA1-205ENST00000550592 PERM1Q5SV97 790 aa7.9□□□□□ -1.14
LIMA1-205ENST00000550592 DTHD1Q6ZMT9 781 aa7.9□□□□□ -1.14
LIMA1-205ENST00000550592 GOLGA6L1Q8N7Z2 621 aa7.9□□□□□ -1.14
LIMA1-205ENST00000550592 TTC9Q92623 222 aa7.9□□□□□ -1.14
LIMA1-205ENST00000550592 PLD4Q96BZ4 506 aa7.9□□□□□ -1.14
LIMA1-205ENST00000550592 POP1Q99575 1024 aaKnown RBP7.9□□□□□ -1.14
LIMA1-205ENST00000550592 FRRS1LQ9P0K9 344 aa7.9□□□□□ -1.14
LIMA1-205ENST00000550592 GDF2Q9UK05 429 aaPredicted RBP7.9□□□□□ -1.14
LIMA1-205ENST00000550592 NAGPAQ9UK23 515 aa7.9□□□□□ -1.14
LIMA1-205ENST00000550592 A0A096LPE4 126 aa7.89□□□□□ -1.15
LIMA1-205ENST00000550592 A0A1W2PPZ6 126 aa7.89□□□□□ -1.15
LIMA1-205ENST00000550592 METTL12A8MUP2 240 aa7.89□□□□□ -1.15
LIMA1-205ENST00000550592 CEP135Q66GS9 1140 aa7.89□□□□□ -1.15
LIMA1-205ENST00000550592 SLCO4C1Q6ZQN7 724 aa7.89□□□□□ -1.15
LIMA1-205ENST00000550592 IRF7Q92985 503 aa7.89□□□□□ -1.15
LIMA1-205ENST00000550592 C8orf37Q96NL8 207 aa7.89□□□□□ -1.15
LIMA1-205ENST00000550592 NOC4LQ9BVI4 516 aaKnown RBP7.89□□□□□ -1.15
LIMA1-205ENST00000550592 AKAP2Q9Y2D5 859 aa7.89□□□□□ -1.15
LIMA1-205ENST00000550592 ALAS2P22557 587 aa7.88□□□□□ -1.15
LIMA1-205ENST00000550592 ZC3H6P61129 1189 aaKnown RBP7.88□□□□□ -1.15
LIMA1-205ENST00000550592 KRT76Q01546 638 aa7.88□□□□□ -1.15
LIMA1-205ENST00000550592 RPS26P11Q5JNZ5 115 aaPredicted RBP7.88□□□□□ -1.15
LIMA1-205ENST00000550592 ELMSAN1Q6PJG2 1045 aa7.88□□□□□ -1.15
LIMA1-205ENST00000550592 HS2ST1Q7LGA3 356 aa7.88□□□□□ -1.15
LIMA1-205ENST00000550592 MICALL1Q8N3F8 863 aa7.88□□□□□ -1.15
LIMA1-205ENST00000550592 LPIN3Q9BQK8 851 aa7.88□□□□□ -1.15
LIMA1-205ENST00000550592 TGIF2Q9GZN2 237 aa7.88□□□□□ -1.15
LIMA1-205ENST00000550592 TTF2Q9UNY4 1162 aaKnown RBP7.88□□□□□ -1.15
LIMA1-205ENST00000550592 MAP3K10Q02779 954 aa7.87□□□□□ -1.15
LIMA1-205ENST00000550592 ERMP1Q7Z2K6 904 aa7.87□□□□□ -1.15
LIMA1-205ENST00000550592 BSNDQ8WZ55 320 aa7.87□□□□□ -1.15
LIMA1-205ENST00000550592 ADAM19Q9H013 955 aa7.87□□□□□ -1.15
LIMA1-205ENST00000550592 SMG9Q9H0W8 520 aaKnown RBP7.87□□□□□ -1.15
LIMA1-205ENST00000550592 GGT7Q9UJ14 662 aa7.87□□□□□ -1.15
LIMA1-205ENST00000550592 ABCC9O60706 1549 aa7.87□□□□□ -1.15
LIMA1-205ENST00000550592 EPXP11678 715 aa7.86□□□□□ -1.15
LIMA1-205ENST00000550592 PSAPL1Q6NUJ1 521 aa7.86□□□□□ -1.15
LIMA1-205ENST00000550592 SV2BQ7L1I2 683 aa7.86□□□□□ -1.15
LIMA1-205ENST00000550592 ASAP3Q8TDY4 903 aa7.86□□□□□ -1.15
LIMA1-205ENST00000550592 ACDQ96AP0 544 aa7.86□□□□□ -1.15
LIMA1-205ENST00000550592 RSRP1Q9BUV0 290 aa7.86□□□□□ -1.15
LIMA1-205ENST00000550592 ZNF576Q9H609 170 aa7.86□□□□□ -1.15
LIMA1-205ENST00000550592 SRA1Q9HD15 236 aaKnown RBP7.86□□□□□ -1.15
LIMA1-205ENST00000550592 DDX41Q9UJV9 622 aaKnown RBP7.86□□□□□ -1.15
LIMA1-205ENST00000550592 STARD13Q9Y3M8 1113 aa7.86□□□□□ -1.15
LIMA1-205ENST00000550592 ADAMTS2O95450 1211 aa7.85□□□□□ -1.15
LIMA1-205ENST00000550592 PTPRAP18433 802 aa7.85□□□□□ -1.15
LIMA1-205ENST00000550592 CCDC85BQ15834 202 aaPredicted RBP7.85□□□□□ -1.15
LIMA1-205ENST00000550592 ADAMTSL4Q6UY14 1074 aa7.85□□□□□ -1.15
LIMA1-205ENST00000550592 C20orf204Q6ZNR8 217 aa7.85□□□□□ -1.15
LIMA1-205ENST00000550592 C1orf229Q6ZS94 237 aaPredicted RBP7.85□□□□□ -1.15
LIMA1-205ENST00000550592 CACTIN-AS1Q8N1I8 211 aa7.85□□□□□ -1.15
LIMA1-205ENST00000550592 CEP44Q9C0F1 390 aa7.85□□□□□ -1.15
LIMA1-205ENST00000550592 MUC3BQ9H195 1237 aa7.85□□□□□ -1.15
LIMA1-205ENST00000550592 SEC31BQ9NQW1 1179 aa7.85□□□□□ -1.15
LIMA1-205ENST00000550592 SOX13Q9UN79 622 aa7.85□□□□□ -1.15
LIMA1-205ENST00000550592 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.85□□□□□ -1.15
LIMA1-205ENST00000550592 RGS9O75916 674 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-205ENST00000550592 SLURP2P0DP57 97 aa7.84□□□□□ -1.15
LIMA1-205ENST00000550592 RACK1P63244 317 aaKnown RBP7.84□□□□□ -1.15
LIMA1-205ENST00000550592 USP48Q86UV5 1035 aa7.84□□□□□ -1.15
LIMA1-205ENST00000550592 ZNF654Q8IZM8 581 aa7.84□□□□□ -1.15
LIMA1-205ENST00000550592 NECAB3Q96P71 396 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-205ENST00000550592 CLEC4MQ9H2X3 399 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-205ENST00000550592 LRRC4BQ9NT99 713 aa7.84□□□□□ -1.15
LIMA1-205ENST00000550592 TRIM33Q9UPN9 1127 aa7.84□□□□□ -1.15
LIMA1-205ENST00000550592 RLBP1P12271 317 aa7.83□□□□□ -1.16
LIMA1-205ENST00000550592 FAAP100Q0VG06 881 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms