RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 SH3TC1Q8TE82 1336 aa9.94□□□□□ -0.82
NEK3-201ENST00000550331 TRAF5O00463 557 aa9.94□□□□□ -0.82
NEK3-201ENST00000550331 PPIP5K2O43314 1243 aa9.94□□□□□ -0.82
NEK3-201ENST00000550331 BBOX1O75936 387 aa9.94□□□□□ -0.82
NEK3-201ENST00000550331 DDX10Q13206 875 aaKnown RBP9.94□□□□□ -0.82
NEK3-201ENST00000550331 WDR43Q15061 677 aaKnown RBP eCLIP9.94□□□□□ -0.82
NEK3-201ENST00000550331 CCDC146Q8IYE0 955 aa9.94□□□□□ -0.82
NEK3-201ENST00000550331 RTFDC1Q9BY42 306 aaPredicted RBP9.94□□□□□ -0.82
NEK3-201ENST00000550331 TCERG1O14776 1098 aaKnown RBP9.93□□□□□ -0.82
NEK3-201ENST00000550331 MAP2K2P36507 400 aa9.93□□□□□ -0.82
NEK3-201ENST00000550331 EPS15P42566 896 aa9.93□□□□□ -0.82
NEK3-201ENST00000550331 NEUROD2Q15784 382 aa9.93□□□□□ -0.82
NEK3-201ENST00000550331 KRT24Q2M2I5 525 aa9.93□□□□□ -0.82
NEK3-201ENST00000550331 CST9Q5W186 159 aa9.93□□□□□ -0.82
NEK3-201ENST00000550331 USP50Q70EL3 339 aaPredicted RBP9.93□□□□□ -0.82
NEK3-201ENST00000550331 TMC4Q7Z404 712 aa9.93□□□□□ -0.82
NEK3-201ENST00000550331 SLC51AQ86UW1 340 aa9.93□□□□□ -0.82
NEK3-201ENST00000550331 SP8Q8IXZ3 490 aa9.93□□□□□ -0.82
NEK3-201ENST00000550331 CHPF2Q9P2E5 772 aa9.93□□□□□ -0.82
NEK3-201ENST00000550331 TRMT112Q9UI30 125 aaKnown RBP9.93□□□□□ -0.82
NEK3-201ENST00000550331 TLL2Q9Y6L7 1015 aa9.93□□□□□ -0.82
NEK3-201ENST00000550331 CDHR2Q9BYE9 1310 aa9.92□□□□□ -0.82
NEK3-201ENST00000550331 CA12O43570 354 aa9.92□□□□□ -0.82
NEK3-201ENST00000550331 HCLS1P14317 486 aaPredicted RBP9.92□□□□□ -0.82
NEK3-201ENST00000550331 AIMP1Q12904 312 aaKnown RBP9.92□□□□□ -0.82
NEK3-201ENST00000550331 DGKZQ13574 1117 aa9.92□□□□□ -0.82
NEK3-201ENST00000550331 GRAPQ13588 217 aa9.92□□□□□ -0.82
NEK3-201ENST00000550331 AOC3Q16853 763 aa9.92□□□□□ -0.82
NEK3-201ENST00000550331 HDGFL1Q5TGJ6 251 aa9.92□□□□□ -0.82
NEK3-201ENST00000550331 DPP8Q6V1X1 898 aaPredicted RBP9.92□□□□□ -0.82
NEK3-201ENST00000550331 DDX46Q7L014 1031 aaKnown RBP9.92□□□□□ -0.82
NEK3-201ENST00000550331 PLBD2Q8NHP8 589 aa9.92□□□□□ -0.82
NEK3-201ENST00000550331 GRAPLQ8TC17 118 aaPredicted RBP9.92□□□□□ -0.82
NEK3-201ENST00000550331 NECTIN2Q92692 538 aa9.92□□□□□ -0.82
NEK3-201ENST00000550331 GPRC5DQ9NZD1 345 aa9.92□□□□□ -0.82
NEK3-201ENST00000550331 DBF4Q9UBU7 674 aaPredicted RBP9.92□□□□□ -0.82
NEK3-201ENST00000550331 ZNRF3Q9ULT6 936 aa9.92□□□□□ -0.82
NEK3-201ENST00000550331 CXCL9Q07325 125 aa9.91□□□□□ -0.82
NEK3-201ENST00000550331 KIAA2012Q0VF49 1180 aa9.91□□□□□ -0.82
NEK3-201ENST00000550331 MPNDQ8N594 471 aa9.91□□□□□ -0.82
NEK3-201ENST00000550331 ADARB2Q9NS39 739 aaKnown RBP9.91□□□□□ -0.82
NEK3-201ENST00000550331 ADAMTS8Q9UP79 889 aa9.91□□□□□ -0.82
NEK3-201ENST00000550331 LAS1LQ9Y4W2 734 aaKnown RBP9.91□□□□□ -0.82
NEK3-201ENST00000550331 ANKRD36CQ5JPF3 1778 aa9.91□□□□□ -0.82
NEK3-201ENST00000550331 CELF2O95319 508 aaKnown RBP9.9□□□□□ -0.82
NEK3-201ENST00000550331 FOSBP53539 338 aa9.9□□□□□ -0.82
NEK3-201ENST00000550331 BRPF1P55201 1214 aaPredicted RBP9.9□□□□□ -0.82
NEK3-201ENST00000550331 SF3B3Q15393 1217 aaKnown RBP9.9□□□□□ -0.82
NEK3-201ENST00000550331 SAPCD2Q86UD0 394 aa9.9□□□□□ -0.82
NEK3-201ENST00000550331 ISCA1Q9BUE6 129 aa9.9□□□□□ -0.82
NEK3-201ENST00000550331 HYPKQ9NX55 129 aa9.9□□□□□ -0.82
NEK3-201ENST00000550331 SOWAHBA6NEL2 793 aa9.89□□□□□ -0.83
NEK3-201ENST00000550331 BCAMP50895 628 aa9.89□□□□□ -0.83
NEK3-201ENST00000550331 CALD1Q05682 793 aaKnown RBP9.89□□□□□ -0.83
NEK3-201ENST00000550331 TRIM28Q13263 835 aaKnown RBP9.89□□□□□ -0.83
NEK3-201ENST00000550331 DUSP27Q5VZP5 1158 aa9.89□□□□□ -0.83
NEK3-201ENST00000550331 CIAPIN1Q6FI81 312 aa9.89□□□□□ -0.83
NEK3-201ENST00000550331 PRKRIP1Q9H875 184 aaPredicted RBP9.89□□□□□ -0.83
NEK3-201ENST00000550331 MBIPQ9NS73 344 aa9.89□□□□□ -0.83
NEK3-201ENST00000550331 DUOX1Q9NRD9 1551 aa9.88□□□□□ -0.83
NEK3-201ENST00000550331 LRRC37AA6NMS7 1700 aa9.88□□□□□ -0.83
NEK3-201ENST00000550331 AKAP11Q9UKA4 1901 aa9.88□□□□□ -0.83
NEK3-201ENST00000550331 ZNF853P0CG23 659 aa9.88□□□□□ -0.83
NEK3-201ENST00000550331 GMPSP49915 693 aaPredicted RBP9.88□□□□□ -0.83
NEK3-201ENST00000550331 TNIP1Q15025 636 aa9.88□□□□□ -0.83
NEK3-201ENST00000550331 ZC3H15Q8WU90 426 aaKnown RBP9.88□□□□□ -0.83
NEK3-201ENST00000550331 GLIS2Q9BZE0 524 aaPredicted RBP9.88□□□□□ -0.83
NEK3-201ENST00000550331 ZNF408Q9H9D4 720 aa9.88□□□□□ -0.83
NEK3-201ENST00000550331 GPHNQ9NQX3 736 aaPredicted RBP9.88□□□□□ -0.83
NEK3-201ENST00000550331 PGAP2Q9UHJ9 254 aa9.88□□□□□ -0.83
NEK3-201ENST00000550331 YDJCA8MPS7 323 aa9.87□□□□□ -0.83
NEK3-201ENST00000550331 ATP5J2-PTCD1G3V325 749 aa9.87□□□□□ -0.83
NEK3-201ENST00000550331 SOX10P56693 466 aa9.87□□□□□ -0.83
NEK3-201ENST00000550331 FAM89AQ96GI7 184 aa9.87□□□□□ -0.83
NEK3-201ENST00000550331 HHIPL1Q96JK4 782 aa9.87□□□□□ -0.83
NEK3-201ENST00000550331 BCL2L13Q9BXK5 485 aa9.87□□□□□ -0.83
NEK3-201ENST00000550331 PRKD2Q9BZL6 878 aa9.87□□□□□ -0.83
NEK3-201ENST00000550331 IFT57Q9NWB7 429 aa9.87□□□□□ -0.83
NEK3-201ENST00000550331 RABGEF1Q9UJ41 708 aa9.87□□□□□ -0.83
NEK3-201ENST00000550331 LAMB2P55268 1798 aa9.87□□□□□ -0.83
NEK3-201ENST00000550331 POLR2AP24928 1970 aaKnown RBP9.86□□□□□ -0.83
NEK3-201ENST00000550331 IRS4O14654 1257 aaPredicted RBP9.86□□□□□ -0.83
NEK3-201ENST00000550331 APAF1O14727 1248 aa9.86□□□□□ -0.83
NEK3-201ENST00000550331 RAD17O75943 681 aa9.86□□□□□ -0.83
NEK3-201ENST00000550331 HSP90B1P14625 803 aaKnown RBP9.86□□□□□ -0.83
NEK3-201ENST00000550331 GNAI1P63096 354 aa9.86□□□□□ -0.83
NEK3-201ENST00000550331 NOGQ13253 232 aa9.86□□□□□ -0.83
NEK3-201ENST00000550331 WASHC4Q2M389 1173 aa9.86□□□□□ -0.83
NEK3-201ENST00000550331 ZBTB38Q8NAP3 1195 aaPredicted RBP9.86□□□□□ -0.83
NEK3-201ENST00000550331 OXER1Q8TDS5 423 aa9.86□□□□□ -0.83
NEK3-201ENST00000550331 CELF1Q92879 486 aaKnown RBP9.86□□□□□ -0.83
NEK3-201ENST00000550331 CHMP4AQ9BY43 222 aa9.86□□□□□ -0.83
NEK3-201ENST00000550331 NSFL1CQ9UNZ2 370 aaKnown RBP9.86□□□□□ -0.83
NEK3-201ENST00000550331 DDX60Q8IY21 1712 aaKnown RBP9.85□□□□□ -0.83
NEK3-201ENST00000550331 H7C1D1 291 aa9.85□□□□□ -0.83
NEK3-201ENST00000550331 STK25O00506 426 aa9.85□□□□□ -0.83
NEK3-201ENST00000550331 DSG2Q14126 1118 aa9.85□□□□□ -0.83
NEK3-201ENST00000550331 RIC3Q7Z5B4 369 aa9.85□□□□□ -0.83
NEK3-201ENST00000550331 LAPTM4BQ86VI4 370 aa9.85□□□□□ -0.83
NEK3-201ENST00000550331 DPF2Q92785 391 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms