RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 CARD10Q9BWT7 1032 aa7.48□□□□□ -1.21
VPS29-205ENST00000548539 WDR64B1ANS9 1081 aa7.47□□□□□ -1.21
VPS29-205ENST00000548539 USP17L15C9J2P7 530 aa7.47□□□□□ -1.21
VPS29-205ENST00000548539 USP17L10C9JJH3 530 aa7.47□□□□□ -1.21
VPS29-205ENST00000548539 USP17L13C9JLJ4 530 aa7.47□□□□□ -1.21
VPS29-205ENST00000548539 USP17L12C9JPN9 530 aa7.47□□□□□ -1.21
VPS29-205ENST00000548539 USP17L11C9JVI0 530 aa7.47□□□□□ -1.21
VPS29-205ENST00000548539 USP17L21D6R901 530 aa7.47□□□□□ -1.21
VPS29-205ENST00000548539 USP17L18D6R9N7 530 aa7.47□□□□□ -1.21
VPS29-205ENST00000548539 USP17L22D6RA61 530 aa7.47□□□□□ -1.21
VPS29-205ENST00000548539 USP17L17D6RBQ6 530 aa7.47□□□□□ -1.21
VPS29-205ENST00000548539 USP17L19D6RCP7 530 aa7.47□□□□□ -1.21
VPS29-205ENST00000548539 USP17L20D6RJB6 530 aa7.47□□□□□ -1.21
VPS29-205ENST00000548539 FSCN2O14926 492 aa7.47□□□□□ -1.21
VPS29-205ENST00000548539 ATP11AP98196 1134 aa7.47□□□□□ -1.21
VPS29-205ENST00000548539 USP17L24Q0WX57 530 aa7.47□□□□□ -1.21
VPS29-205ENST00000548539 HYAL2Q12891 473 aa7.47□□□□□ -1.21
VPS29-205ENST00000548539 OGFOD2Q6N063 350 aa7.47□□□□□ -1.21
VPS29-205ENST00000548539 ABI1Q8IZP0 508 aa7.47□□□□□ -1.21
VPS29-205ENST00000548539 ANGEL1Q9UNK9 670 aaKnown RBP7.47□□□□□ -1.21
VPS29-205ENST00000548539 ZBTB7CA1YPR0 619 aa7.46□□□□□ -1.22
VPS29-205ENST00000548539 FAM196BA6NMK8 535 aa7.46□□□□□ -1.22
VPS29-205ENST00000548539 KANK4Q5T7N3 995 aaPredicted RBP7.46□□□□□ -1.22
VPS29-205ENST00000548539 OR13H1Q8NG92 308 aa7.46□□□□□ -1.22
VPS29-205ENST00000548539 FAM177BA6PVY3 158 aa7.45□□□□□ -1.22
VPS29-205ENST00000548539 TM4SF5O14894 197 aa7.45□□□□□ -1.22
VPS29-205ENST00000548539 DDX3YO15523 660 aaKnown RBP7.45□□□□□ -1.22
VPS29-205ENST00000548539 HOXA10P31260 410 aaPredicted RBP7.45□□□□□ -1.22
VPS29-205ENST00000548539 ANKRD34AQ69YU3 496 aa7.45□□□□□ -1.22
VPS29-205ENST00000548539 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.45□□□□□ -1.22
VPS29-205ENST00000548539 GIMAP7Q8NHV1 300 aa7.45□□□□□ -1.22
VPS29-205ENST00000548539 UBASH3BQ8TF42 649 aa7.45□□□□□ -1.22
VPS29-205ENST00000548539 KRTAP4-9Q9BYQ8 210 aa7.45□□□□□ -1.22
VPS29-205ENST00000548539 VRTNQ9H8Y1 702 aa7.45□□□□□ -1.22
VPS29-205ENST00000548539 PIM2Q9P1W9 311 aa7.45□□□□□ -1.22
VPS29-205ENST00000548539 SCNN1AP37088 669 aa7.44□□□□□ -1.22
VPS29-205ENST00000548539 COX20Q5RI15 118 aa7.44□□□□□ -1.22
VPS29-205ENST00000548539 COL13A1Q5TAT6 717 aaPredicted RBP7.44□□□□□ -1.22
VPS29-205ENST00000548539 FOXD4L4Q8WXT5 416 aaPredicted RBP7.44□□□□□ -1.22
VPS29-205ENST00000548539 ASIC4Q96FT7 647 aa7.44□□□□□ -1.22
VPS29-205ENST00000548539 MFSD14AQ96MC6 490 aa7.44□□□□□ -1.22
VPS29-205ENST00000548539 KRTAP4-2Q9BYR5 136 aa7.44□□□□□ -1.22
VPS29-205ENST00000548539 SEC31BQ9NQW1 1179 aa7.44□□□□□ -1.22
VPS29-205ENST00000548539 HIF3AQ9Y2N7 669 aa7.44□□□□□ -1.22
VPS29-205ENST00000548539 UBAP1LF5GYI3 381 aa7.43□□□□□ -1.22
VPS29-205ENST00000548539 ATG7O95352 703 aa7.43□□□□□ -1.22
VPS29-205ENST00000548539 TRIP4Q15650 581 aaPredicted RBP7.43□□□□□ -1.22
VPS29-205ENST00000548539 TTC39BQ5VTQ0 682 aaPredicted RBP7.43□□□□□ -1.22
VPS29-205ENST00000548539 KLHDC7BQ96G42 594 aa7.43□□□□□ -1.22
VPS29-205ENST00000548539 RASSF4Q9H2L5 321 aa7.43□□□□□ -1.22
VPS29-205ENST00000548539 SH2B1Q9NRF2 756 aaPredicted RBP7.43□□□□□ -1.22
VPS29-205ENST00000548539 ATG3Q9NT62 314 aa7.43□□□□□ -1.22
VPS29-205ENST00000548539 LEMD3Q9Y2U8 911 aa7.43□□□□□ -1.22
VPS29-205ENST00000548539 ADAM11O75078 769 aa7.42□□□□□ -1.22
VPS29-205ENST00000548539 C8AP07357 584 aa7.42□□□□□ -1.22
VPS29-205ENST00000548539 PREPP48147 710 aa7.42□□□□□ -1.22
VPS29-205ENST00000548539 PIK3R5Q8WYR1 880 aa7.42□□□□□ -1.22
VPS29-205ENST00000548539 RNF208Q9H0X6 261 aa7.42□□□□□ -1.22
VPS29-205ENST00000548539 PTPRAP18433 802 aa7.41□□□□□ -1.22
VPS29-205ENST00000548539 EPHA1P21709 976 aa7.41□□□□□ -1.22
VPS29-205ENST00000548539 BRD2P25440 801 aaKnown RBP7.41□□□□□ -1.22
VPS29-205ENST00000548539 FDX2Q6P4F2 183 aa7.41□□□□□ -1.22
VPS29-205ENST00000548539 ETFBKMTQ8IXQ9 262 aa7.41□□□□□ -1.22
VPS29-205ENST00000548539 POU5F2Q8N7G0 328 aa7.41□□□□□ -1.22
VPS29-205ENST00000548539 PBX4Q9BYU1 374 aa7.41□□□□□ -1.22
VPS29-205ENST00000548539 USTQ9Y2C2 406 aa7.41□□□□□ -1.22
VPS29-205ENST00000548539 GAS2O43903 313 aaKnown RBP7.4□□□□□ -1.22
VPS29-205ENST00000548539 PDE4CQ08493 712 aa7.4□□□□□ -1.22
VPS29-205ENST00000548539 ADAMTSL4Q6UY14 1074 aa7.4□□□□□ -1.22
VPS29-205ENST00000548539 FBXL6Q8N531 539 aa7.4□□□□□ -1.22
VPS29-205ENST00000548539 FAM13BQ9NYF5 915 aa7.4□□□□□ -1.22
VPS29-205ENST00000548539 CCDC39Q9UFE4 941 aa7.4□□□□□ -1.22
VPS29-205ENST00000548539 ZMIZ1Q9ULJ6 1067 aa7.4□□□□□ -1.22
VPS29-205ENST00000548539 NOVA2Q9UNW9 492 aaKnown RBP7.4□□□□□ -1.22
VPS29-205ENST00000548539 FNDC3AQ9Y2H6 1198 aaKnown RBP7.4□□□□□ -1.22
VPS29-205ENST00000548539 TMEM88BA6NKF7 163 aa7.39□□□□□ -1.23
VPS29-205ENST00000548539 FOSL1P15407 271 aa7.39□□□□□ -1.23
VPS29-205ENST00000548539 MAP4P27816 1152 aaKnown RBP7.39□□□□□ -1.23
VPS29-205ENST00000548539 CABP4P57796 275 aa7.39□□□□□ -1.23
VPS29-205ENST00000548539 NCAPG2Q86XI2 1143 aa7.39□□□□□ -1.23
VPS29-205ENST00000548539 TP53INP2Q8IXH6 220 aa7.39□□□□□ -1.23
VPS29-205ENST00000548539 FAM200AQ8TCP9 573 aa7.39□□□□□ -1.23
VPS29-205ENST00000548539 STK32AQ8WU08 396 aa7.39□□□□□ -1.23
VPS29-205ENST00000548539 WNT8BQ93098 351 aa7.39□□□□□ -1.23
VPS29-205ENST00000548539 FBXL18Q96ME1 805 aa7.39□□□□□ -1.23
VPS29-205ENST00000548539 RUSC1Q9BVN2 902 aa7.39□□□□□ -1.23
VPS29-205ENST00000548539 OSBPL1AQ9BXW6 950 aa7.39□□□□□ -1.23
VPS29-205ENST00000548539 H3BRJ5 948 aa7.38□□□□□ -1.23
VPS29-205ENST00000548539 PIP4K2BP78356 416 aa7.38□□□□□ -1.23
VPS29-205ENST00000548539 MSMPQ1L6U9 139 aa7.38□□□□□ -1.23
VPS29-205ENST00000548539 TMEM164Q5U3C3 297 aa7.38□□□□□ -1.23
VPS29-205ENST00000548539 CBLL1Q75N03 491 aa7.38□□□□□ -1.23
VPS29-205ENST00000548539 COL26A1Q96A83 441 aa7.38□□□□□ -1.23
VPS29-205ENST00000548539 KRTAP17-1Q9BYP8 105 aa7.38□□□□□ -1.23
VPS29-205ENST00000548539 ADAM19Q9H013 955 aa7.38□□□□□ -1.23
VPS29-205ENST00000548539 OSGEPQ9NPF4 335 aa7.38□□□□□ -1.23
VPS29-205ENST00000548539 KIF4AO95239 1232 aa7.37□□□□□ -1.23
VPS29-205ENST00000548539 PRNPP04156 253 aa7.37□□□□□ -1.23
VPS29-205ENST00000548539 F13BP05160 661 aa7.37□□□□□ -1.23
VPS29-205ENST00000548539 RXRBP28702 533 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms