RNA–Protein interactions for RNA: ENST00000545083.1

CHD4-212, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 511 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-212ENST00000545083 IGF2BP3O00425 579 aaKnown RBP eCLIP12.25□□□□□ -0.45
CHD4-212ENST00000545083 ATP2B4P23634 1241 aa12.25□□□□□ -0.45
CHD4-212ENST00000545083 CCDC152Q4G0S7 254 aa12.25□□□□□ -0.45
CHD4-212ENST00000545083 INTS3Q68E01 1043 aaKnown RBP12.25□□□□□ -0.45
CHD4-212ENST00000545083 ARMC9Q7Z3E5 817 aa12.25□□□□□ -0.45
CHD4-212ENST00000545083 DBF4Q9UBU7 674 aaPredicted RBP12.25□□□□□ -0.45
CHD4-212ENST00000545083 ANGEL1Q9UNK9 670 aaKnown RBP12.25□□□□□ -0.45
CHD4-212ENST00000545083 ZNF646O15015 1829 aaPredicted RBP12.25□□□□□ -0.45
CHD4-212ENST00000545083 ALDH1A1P00352 501 aa12.24□□□□□ -0.45
CHD4-212ENST00000545083 IFNL1Q8IU54 200 aa12.24□□□□□ -0.45
CHD4-212ENST00000545083 CD99L2Q8TCZ2 262 aa12.24□□□□□ -0.45
CHD4-212ENST00000545083 FBXW7Q969H0 707 aa12.24□□□□□ -0.45
CHD4-212ENST00000545083 ZBED3Q96IU2 234 aaPredicted RBP12.24□□□□□ -0.45
CHD4-212ENST00000545083 HYPKQ9NX55 129 aa12.24□□□□□ -0.45
CHD4-212ENST00000545083 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.24□□□□□ -0.45
CHD4-212ENST00000545083 COLQQ9Y215 455 aaPredicted RBP12.24□□□□□ -0.45
CHD4-212ENST00000545083 PTPN22Q9Y2R2 807 aa12.24□□□□□ -0.45
CHD4-212ENST00000545083 LAS1LQ9Y4W2 734 aaKnown RBP12.24□□□□□ -0.45
CHD4-212ENST00000545083 MED23Q9ULK4 1368 aa12.23□□□□□ -0.45
CHD4-212ENST00000545083 MANSC4A6NHS7 340 aaPredicted RBP12.23□□□□□ -0.45
CHD4-212ENST00000545083 PDE8AO60658 829 aa12.23□□□□□ -0.45
CHD4-212ENST00000545083 PCCAP05165 728 aaPredicted RBP12.23□□□□□ -0.45
CHD4-212ENST00000545083 HOXB7P09629 217 aa12.23□□□□□ -0.45
CHD4-212ENST00000545083 LMOD3Q0VAK6 560 aa12.23□□□□□ -0.45
CHD4-212ENST00000545083 NEUROD2Q15784 382 aa12.23□□□□□ -0.45
CHD4-212ENST00000545083 STRIP1Q5VSL9 837 aa12.23□□□□□ -0.45
CHD4-212ENST00000545083 TXNRD3Q86VQ6 643 aa12.23□□□□□ -0.45
CHD4-212ENST00000545083 ANKRD18AQ8IVF6 992 aa12.23□□□□□ -0.45
CHD4-212ENST00000545083 OGFOD1Q8N543 542 aa12.23□□□□□ -0.45
CHD4-212ENST00000545083 ARMC5Q96C12 935 aa12.23□□□□□ -0.45
CHD4-212ENST00000545083 CLMNQ96JQ2 1002 aa12.23□□□□□ -0.45
CHD4-212ENST00000545083 MYD88Q99836 296 aa12.23□□□□□ -0.45
CHD4-212ENST00000545083 PHAXQ9H814 394 aaKnown RBP12.23□□□□□ -0.45
CHD4-212ENST00000545083 TRIM35Q9UPQ4 493 aa12.23□□□□□ -0.45
CHD4-212ENST00000545083 RBBP6Q7Z6E9 1792 aaKnown RBP12.23□□□□□ -0.45
CHD4-212ENST00000545083 SSC5DA1L4H1 1573 aa12.22□□□□□ -0.45
CHD4-212ENST00000545083 RIC3Q7Z5B4 369 aa12.22□□□□□ -0.45
CHD4-212ENST00000545083 WNK4Q96J92 1243 aa12.22□□□□□ -0.45
CHD4-212ENST00000545083 MINPP1Q9UNW1 487 aa12.22□□□□□ -0.45
CHD4-212ENST00000545083 MYO3BQ8WXR4 1341 aa12.21□□□□□ -0.45
CHD4-212ENST00000545083 KLRK1P26718 216 aa12.21□□□□□ -0.45
CHD4-212ENST00000545083 GJA5P36382 358 aa12.21□□□□□ -0.45
CHD4-212ENST00000545083 INHBEP58166 350 aa12.21□□□□□ -0.45
CHD4-212ENST00000545083 CRHR2Q13324 411 aa12.21□□□□□ -0.45
CHD4-212ENST00000545083 MAP3K11Q16584 847 aa12.21□□□□□ -0.45
CHD4-212ENST00000545083 DUSP27Q5VZP5 1158 aa12.21□□□□□ -0.45
CHD4-212ENST00000545083 APOBEC3FQ8IUX4 373 aaKnown RBP12.21□□□□□ -0.45
CHD4-212ENST00000545083 KIAA0825Q8IV33 1275 aa12.21□□□□□ -0.45
CHD4-212ENST00000545083 CCDC191Q8NCU4 936 aa12.21□□□□□ -0.45
CHD4-212ENST00000545083 SLC10A4Q96EP9 437 aa12.21□□□□□ -0.45
CHD4-212ENST00000545083 ERO1AQ96HE7 468 aa12.21□□□□□ -0.45
CHD4-212ENST00000545083 ZBTB48P10074 688 aaPredicted RBP12.2□□□□□ -0.46
CHD4-212ENST00000545083 HSP90B1P14625 803 aaKnown RBP12.2□□□□□ -0.46
CHD4-212ENST00000545083 CCT4P50991 539 aaKnown RBP12.2□□□□□ -0.46
CHD4-212ENST00000545083 GOLGA2Q08379 1002 aa12.2□□□□□ -0.46
CHD4-212ENST00000545083 CCDC146Q8IYE0 955 aa12.2□□□□□ -0.46
CHD4-212ENST00000545083 PTPN18Q99952 460 aa12.2□□□□□ -0.46
CHD4-212ENST00000545083 COA1Q9GZY4 146 aa12.2□□□□□ -0.46
CHD4-212ENST00000545083 DEFB129Q9H1M3 183 aa12.2□□□□□ -0.46
CHD4-212ENST00000545083 EFCC1Q9HA90 598 aa12.2□□□□□ -0.46
CHD4-212ENST00000545083 BSDC1Q9NW68 430 aaPredicted RBP12.2□□□□□ -0.46
CHD4-212ENST00000545083 PCDHAC2Q9Y5I4 1007 aa12.2□□□□□ -0.46
CHD4-212ENST00000545083 RANBP2P49792 3224 aaKnown RBP12.2□□□□□ -0.46
CHD4-212ENST00000545083 CTSWP56202 376 aa12.19□□□□□ -0.46
CHD4-212ENST00000545083 TTLL5Q6EMB2 1281 aa12.19□□□□□ -0.46
CHD4-212ENST00000545083 ZNF333Q96JL9 665 aa12.19□□□□□ -0.46
CHD4-212ENST00000545083 CDC5LQ99459 802 aaKnown RBP12.19□□□□□ -0.46
CHD4-212ENST00000545083 CWC25Q9NXE8 425 aaPredicted RBP12.19□□□□□ -0.46
CHD4-212ENST00000545083 AOX1Q06278 1338 aa12.18□□□□□ -0.46
CHD4-212ENST00000545083 SP3Q02447 781 aa12.18□□□□□ -0.46
CHD4-212ENST00000545083 TTLL11Q8NHH1 800 aa12.18□□□□□ -0.46
CHD4-212ENST00000545083 OTUD5Q96G74 571 aa12.18□□□□□ -0.46
CHD4-212ENST00000545083 GREM2Q9H772 168 aa12.18□□□□□ -0.46
CHD4-212ENST00000545083 COL1A1P02452 1464 aaPredicted RBP12.18□□□□□ -0.46
CHD4-212ENST00000545083 H0YGN5 161 aa12.17□□□□□ -0.46
CHD4-212ENST00000545083 MMP14P50281 582 aa12.17□□□□□ -0.46
CHD4-212ENST00000545083 GTF2IP78347 998 aa12.17□□□□□ -0.46
CHD4-212ENST00000545083 NBPF12Q5TAG4 269 aaPredicted RBP12.17□□□□□ -0.46
CHD4-212ENST00000545083 CERS5Q8N5B7 392 aa12.17□□□□□ -0.46
CHD4-212ENST00000545083 METTL22Q9BUU2 404 aaPredicted RBP12.17□□□□□ -0.46
CHD4-212ENST00000545083 TMEM106CQ9BVX2 250 aa12.17□□□□□ -0.46
CHD4-212ENST00000545083 MBIPQ9NS73 344 aa12.17□□□□□ -0.46
CHD4-212ENST00000545083 LAMB1P07942 1786 aa12.17□□□□□ -0.46
CHD4-212ENST00000545083 CLRN2A0PK11 232 aa12.16□□□□□ -0.46
CHD4-212ENST00000545083 TESPA1A2RU30 521 aaPredicted RBP12.16□□□□□ -0.46
CHD4-212ENST00000545083 PPP1R12BO60237 982 aaPredicted RBP12.16□□□□□ -0.46
CHD4-212ENST00000545083 USP2O75604 605 aaPredicted RBP12.16□□□□□ -0.46
CHD4-212ENST00000545083 IGKV5-2P06315 115 aa12.16□□□□□ -0.46
CHD4-212ENST00000545083 DLGAP5Q15398 846 aa12.16□□□□□ -0.46
CHD4-212ENST00000545083 LEMD3Q9Y2U8 911 aa12.16□□□□□ -0.46
CHD4-212ENST00000545083 PTCH2Q9Y6C5 1203 aa12.16□□□□□ -0.46
CHD4-212ENST00000545083 SPEF2Q9C093 1822 aa12.16□□□□□ -0.46
CHD4-212ENST00000545083 ZNF804BA4D1E1 1349 aa12.15□□□□□ -0.46
CHD4-212ENST00000545083 ELL2O00472 640 aaPredicted RBP12.15□□□□□ -0.46
CHD4-212ENST00000545083 MYCP01106 439 aaPredicted RBP12.15□□□□□ -0.46
CHD4-212ENST00000545083 MTMR14Q8NCE2 650 aa12.15□□□□□ -0.46
CHD4-212ENST00000545083 PPP2R3BQ9Y5P8 575 aa12.15□□□□□ -0.46
CHD4-212ENST00000545083 SNAP23O00161 211 aa12.14□□□□□ -0.47
CHD4-212ENST00000545083 ZNF853P0CG23 659 aa12.14□□□□□ -0.47
CHD4-212ENST00000545083 SLC9C1Q4G0N8 1177 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms