RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 HDAC9Q9UKV0 1011 aa16.64■□□□□ 0.25
USP28-212ENST00000544750 MKI67P46013 3256 aaKnown RBP16.63■□□□□ 0.25
USP28-212ENST00000544750 FBXO46Q6PJ61 603 aaPredicted RBP16.63■□□□□ 0.25
USP28-212ENST00000544750 MXD3Q9BW11 206 aa16.63■□□□□ 0.25
USP28-212ENST00000544750 R3HDMLQ9H3Y0 253 aa16.63■□□□□ 0.25
USP28-212ENST00000544750 CWC25Q9NXE8 425 aaPredicted RBP16.63■□□□□ 0.25
USP28-212ENST00000544750 METTL22Q9BUU2 404 aaPredicted RBP16.62■□□□□ 0.25
USP28-212ENST00000544750 TTLL11Q8NHH1 800 aa16.61■□□□□ 0.25
USP28-212ENST00000544750 ZBED3Q96IU2 234 aaPredicted RBP16.61■□□□□ 0.25
USP28-212ENST00000544750 BSDC1Q9NW68 430 aaPredicted RBP16.61■□□□□ 0.25
USP28-212ENST00000544750 MINPP1Q9UNW1 487 aa16.61■□□□□ 0.25
USP28-212ENST00000544750 ADAMTS8Q9UP79 889 aa16.61■□□□□ 0.25
USP28-212ENST00000544750 MYBBP1AQ9BQG0 1328 aaKnown RBP16.61■□□□□ 0.25
USP28-212ENST00000544750 KIAA0100Q14667 2235 aaKnown RBP16.61■□□□□ 0.25
USP28-212ENST00000544750 CENPFP49454 3210 aa16.6■□□□□ 0.25
USP28-212ENST00000544750 A0A1B0GUL6 1792 aa16.6■□□□□ 0.25
USP28-212ENST00000544750 PTPN12Q05209 780 aaKnown RBP16.6■□□□□ 0.25
USP28-212ENST00000544750 LDLRAD1Q5T700 205 aa16.6■□□□□ 0.25
USP28-212ENST00000544750 STRIP1Q5VSL9 837 aa16.6■□□□□ 0.25
USP28-212ENST00000544750 TXNRD3Q86VQ6 643 aa16.6■□□□□ 0.25
USP28-212ENST00000544750 MYO3BQ8WXR4 1341 aa16.6■□□□□ 0.25
USP28-212ENST00000544750 FKTNO75072 461 aa16.59■□□□□ 0.25
USP28-212ENST00000544750 IGKV5-2P06315 115 aa16.59■□□□□ 0.25
USP28-212ENST00000544750 MMP14P50281 582 aa16.59■□□□□ 0.25
USP28-212ENST00000544750 CCT4P50991 539 aaKnown RBP16.59■□□□□ 0.25
USP28-212ENST00000544750 CTSWP56202 376 aa16.59■□□□□ 0.25
USP28-212ENST00000544750 SREBF2Q12772 1141 aa16.59■□□□□ 0.25
USP28-212ENST00000544750 CDC5LQ99459 802 aaKnown RBP16.59■□□□□ 0.25
USP28-212ENST00000544750 NF2P35240 595 aa16.58■□□□□ 0.24
USP28-212ENST00000544750 MKRN3Q13064 507 aaKnown RBP16.58■□□□□ 0.24
USP28-212ENST00000544750 TTLL12Q14166 644 aaPredicted RBP16.58■□□□□ 0.24
USP28-212ENST00000544750 SPRYD7Q5W111 196 aa16.58■□□□□ 0.24
USP28-212ENST00000544750 OGFOD1Q8N543 542 aa16.58■□□□□ 0.24
USP28-212ENST00000544750 COA1Q9GZY4 146 aa16.58■□□□□ 0.24
USP28-212ENST00000544750 GREM2Q9H772 168 aa16.58■□□□□ 0.24
USP28-212ENST00000544750 IFT57Q9NWB7 429 aa16.58■□□□□ 0.24
USP28-212ENST00000544750 ELL2O00472 640 aaPredicted RBP16.57■□□□□ 0.24
USP28-212ENST00000544750 SASH1O94885 1247 aa16.57■□□□□ 0.24
USP28-212ENST00000544750 C8orf58Q8NAV2 365 aa16.57■□□□□ 0.24
USP28-212ENST00000544750 COL1A1P02452 1464 aaPredicted RBP16.56■□□□□ 0.24
USP28-212ENST00000544750 BRCA2P51587 3418 aa16.56■□□□□ 0.24
USP28-212ENST00000544750 GNAI1P63096 354 aa16.56■□□□□ 0.24
USP28-212ENST00000544750 WDR43Q15061 677 aaKnown RBP eCLIP16.56■□□□□ 0.24
USP28-212ENST00000544750 MAP3K11Q16584 847 aa16.56■□□□□ 0.24
USP28-212ENST00000544750 ARMC9Q7Z3E5 817 aa16.56■□□□□ 0.24
USP28-212ENST00000544750 APOBEC3FQ8IUX4 373 aaKnown RBP16.56■□□□□ 0.24
USP28-212ENST00000544750 MAP3K2Q9Y2U5 619 aa16.56■□□□□ 0.24
USP28-212ENST00000544750 LEMD3Q9Y2U8 911 aa16.56■□□□□ 0.24
USP28-212ENST00000544750 SSC5DA1L4H1 1573 aa16.55■□□□□ 0.24
USP28-212ENST00000544750 CACNA1FO60840 1977 aa16.55■□□□□ 0.24
USP28-212ENST00000544750 DDX58O95786 925 aaKnown RBP16.55■□□□□ 0.24
USP28-212ENST00000544750 KLRK1P26718 216 aa16.55■□□□□ 0.24
USP28-212ENST00000544750 ZEB1P37275 1124 aaPredicted RBP16.55■□□□□ 0.24
USP28-212ENST00000544750 KSR2Q6VAB6 950 aa16.55■□□□□ 0.24
USP28-212ENST00000544750 OTOFQ9HC10 1997 aa16.55■□□□□ 0.24
USP28-212ENST00000544750 ALDH1A1P00352 501 aa16.54■□□□□ 0.24
USP28-212ENST00000544750 PRKG1Q13976 671 aa16.54■□□□□ 0.24
USP28-212ENST00000544750 TTLL5Q6EMB2 1281 aa16.54■□□□□ 0.24
USP28-212ENST00000544750 ANGEL1Q9UNK9 670 aaKnown RBP16.54■□□□□ 0.24
USP28-212ENST00000544750 FZD1Q9UP38 647 aa16.54■□□□□ 0.24
USP28-212ENST00000544750 IRS2Q9Y4H2 1338 aa16.53■□□□□ 0.24
USP28-212ENST00000544750 PI4KAP2A4QPH2 592 aa16.53■□□□□ 0.24
USP28-212ENST00000544750 INHBEP58166 350 aa16.53■□□□□ 0.24
USP28-212ENST00000544750 CCDC30Q5VVM6 783 aa16.53■□□□□ 0.24
USP28-212ENST00000544750 OTOP1Q7RTM1 612 aa16.53■□□□□ 0.24
USP28-212ENST00000544750 IFNL1Q8IU54 200 aa16.53■□□□□ 0.24
USP28-212ENST00000544750 KIAA0825Q8IV33 1275 aa16.53■□□□□ 0.24
USP28-212ENST00000544750 PI4KAP1Q8N8J0 262 aa16.53■□□□□ 0.24
USP28-212ENST00000544750 FBXW7Q969H0 707 aa16.53■□□□□ 0.24
USP28-212ENST00000544750 GCC1Q96CN9 775 aa16.53■□□□□ 0.24
USP28-212ENST00000544750 ZNF804BA4D1E1 1349 aa16.52■□□□□ 0.24
USP28-212ENST00000544750 POTEFA5A3E0 1075 aa16.52■□□□□ 0.24
USP28-212ENST00000544750 MANSC4A6NHS7 340 aaPredicted RBP16.52■□□□□ 0.24
USP28-212ENST00000544750 NEURL1BA8MQ27 555 aa16.52■□□□□ 0.24
USP28-212ENST00000544750 H7C1W4 665 aa16.52■□□□□ 0.24
USP28-212ENST00000544750 IGF2BP3O00425 579 aaKnown RBP eCLIP16.52■□□□□ 0.24
USP28-212ENST00000544750 APAF1O14727 1248 aa16.52■□□□□ 0.24
USP28-212ENST00000544750 CWF19L2Q2TBE0 894 aaKnown RBP16.52■□□□□ 0.24
USP28-212ENST00000544750 TSPYL6Q8N831 410 aa16.52■□□□□ 0.24
USP28-212ENST00000544750 MTMR14Q8NCE2 650 aa16.52■□□□□ 0.24
USP28-212ENST00000544750 PLA2G12BQ9BX93 195 aa16.52■□□□□ 0.24
USP28-212ENST00000544750 ZBTB48P10074 688 aaPredicted RBP16.51■□□□□ 0.23
USP28-212ENST00000544750 GTF2IP78347 998 aa16.51■□□□□ 0.23
USP28-212ENST00000544750 CERS5Q8N5B7 392 aa16.51■□□□□ 0.23
USP28-212ENST00000544750 WNK4Q96J92 1243 aa16.51■□□□□ 0.23
USP28-212ENST00000544750 DEFB129Q9H1M3 183 aa16.51■□□□□ 0.23
USP28-212ENST00000544750 TRIM17Q9Y577 477 aa16.51■□□□□ 0.23
USP28-212ENST00000544750 UNCXA6NJT0 531 aa16.5■□□□□ 0.23
USP28-212ENST00000544750 IGHMBP2P38935 993 aaKnown RBP16.5■□□□□ 0.23
USP28-212ENST00000544750 CASP7P55210 303 aa16.5■□□□□ 0.23
USP28-212ENST00000544750 CALD1Q05682 793 aaKnown RBP16.5■□□□□ 0.23
USP28-212ENST00000544750 HABP4Q5JVS0 413 aaKnown RBP16.5■□□□□ 0.23
USP28-212ENST00000544750 INTS3Q68E01 1043 aaKnown RBP16.5■□□□□ 0.23
USP28-212ENST00000544750 SLC10A4Q96EP9 437 aa16.5■□□□□ 0.23
USP28-212ENST00000544750 CLMNQ96JQ2 1002 aa16.5■□□□□ 0.23
USP28-212ENST00000544750 CHMP4AQ9BY43 222 aa16.5■□□□□ 0.23
USP28-212ENST00000544750 ANKRD2Q9GZV1 360 aa16.5■□□□□ 0.23
USP28-212ENST00000544750 CD209Q9NNX6 404 aa16.5■□□□□ 0.23
USP28-212ENST00000544750 PCDHAC2Q9Y5I4 1007 aa16.5■□□□□ 0.23
USP28-212ENST00000544750 CSF1RP07333 972 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms