RNA–Protein interactions for RNA: ENST00000544501.1

YBX3-214, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 181 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-214ENST00000544501 BHLHE41Q9C0J9 482 aaPredicted RBP4.13□□□□□ -1.75
YBX3-214ENST00000544501 ADAM19Q9H013 955 aa4.13□□□□□ -1.75
YBX3-214ENST00000544501 MUC3BQ9H195 1237 aa4.13□□□□□ -1.75
YBX3-214ENST00000544501 RASSF4Q9H2L5 321 aa4.13□□□□□ -1.75
YBX3-214ENST00000544501 NLRP2Q9NX02 1062 aa4.13□□□□□ -1.75
YBX3-214ENST00000544501 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.13□□□□□ -1.75
YBX3-214ENST00000544501 SPDYE3A6NKU9 549 aa4.12□□□□□ -1.75
YBX3-214ENST00000544501 PRPF40AO75400 957 aaKnown RBP4.12□□□□□ -1.75
YBX3-214ENST00000544501 LDHBP07195 334 aaKnown RBP4.12□□□□□ -1.75
YBX3-214ENST00000544501 NID1P14543 1247 aa4.12□□□□□ -1.75
YBX3-214ENST00000544501 PTPRAP18433 802 aa4.12□□□□□ -1.75
YBX3-214ENST00000544501 SNRPNP63162 240 aaKnown RBP4.12□□□□□ -1.75
YBX3-214ENST00000544501 ATP11AP98196 1134 aa4.12□□□□□ -1.75
YBX3-214ENST00000544501 CEP135Q66GS9 1140 aa4.12□□□□□ -1.75
YBX3-214ENST00000544501 MSL1Q68DK7 614 aa4.12□□□□□ -1.75
YBX3-214ENST00000544501 FBXO33Q7Z6M2 555 aa4.12□□□□□ -1.75
YBX3-214ENST00000544501 NXPE3Q969Y0 559 aa4.12□□□□□ -1.75
YBX3-214ENST00000544501 POP1Q99575 1024 aaKnown RBP4.12□□□□□ -1.75
YBX3-214ENST00000544501 SRCIN1Q9C0H9 1055 aa4.12□□□□□ -1.75
YBX3-214ENST00000544501 SUV39H2Q9H5I1 410 aa4.12□□□□□ -1.75
YBX3-214ENST00000544501 NPHS2Q9NP85 383 aa4.12□□□□□ -1.75
YBX3-214ENST00000544501 PPP4R2Q9NY27 417 aa4.12□□□□□ -1.75
YBX3-214ENST00000544501 NOP53Q9NZM5 478 aaKnown RBP4.12□□□□□ -1.75
YBX3-214ENST00000544501 TRAK1Q9UPV9 953 aa4.12□□□□□ -1.75
YBX3-214ENST00000544501 FAM177BA6PVY3 158 aa4.11□□□□□ -1.75
YBX3-214ENST00000544501 RNF225M0QZC1 329 aaPredicted RBP4.11□□□□□ -1.75
YBX3-214ENST00000544501 ITGAEP38570 1179 aa4.11□□□□□ -1.75
YBX3-214ENST00000544501 PRPF40BQ6NWY9 871 aaKnown RBP4.11□□□□□ -1.75
YBX3-214ENST00000544501 C8orf86Q6ZUL3 223 aa4.11□□□□□ -1.75
YBX3-214ENST00000544501 ALYREFQ86V81 257 aaKnown RBP4.11□□□□□ -1.75
YBX3-214ENST00000544501 WFDC8Q8IUA0 241 aa4.11□□□□□ -1.75
YBX3-214ENST00000544501 CCNJLQ8IV13 435 aa4.11□□□□□ -1.75
YBX3-214ENST00000544501 DTWD1Q8N5C7 304 aa4.11□□□□□ -1.75
YBX3-214ENST00000544501 EPS8L3Q8TE67 593 aaKnown RBP4.11□□□□□ -1.75
YBX3-214ENST00000544501 BSNDQ8WZ55 320 aa4.11□□□□□ -1.75
YBX3-214ENST00000544501 EHD4Q9H223 541 aa4.11□□□□□ -1.75
YBX3-214ENST00000544501 LIN7BQ9HAP6 207 aa4.11□□□□□ -1.75
YBX3-214ENST00000544501 ZFYVE1Q9HBF4 777 aa4.11□□□□□ -1.75
YBX3-214ENST00000544501 SRA1Q9HD15 236 aaKnown RBP4.11□□□□□ -1.75
YBX3-214ENST00000544501 LATS2Q9NRM7 1088 aa4.11□□□□□ -1.75
YBX3-214ENST00000544501 TRIM33Q9UPN9 1127 aa4.11□□□□□ -1.75
YBX3-214ENST00000544501 SPG7Q9UQ90 795 aa4.11□□□□□ -1.75
YBX3-214ENST00000544501 PPME1Q9Y570 386 aa4.11□□□□□ -1.75
YBX3-214ENST00000544501 CNTNAP5Q8WYK1 1306 aa4.11□□□□□ -1.75
YBX3-214ENST00000544501 EIF4EBP3O60516 100 aaPredicted RBP4.1□□□□□ -1.75
YBX3-214ENST00000544501 GADD45BO75293 160 aaPredicted RBP4.1□□□□□ -1.75
YBX3-214ENST00000544501 XRCC5P13010 732 aaKnown RBP4.1□□□□□ -1.75
YBX3-214ENST00000544501 ACPPP15309 386 aa4.1□□□□□ -1.75
YBX3-214ENST00000544501 CDC27P30260 824 aa4.1□□□□□ -1.75
YBX3-214ENST00000544501 BAG6P46379 1132 aa4.1□□□□□ -1.75
YBX3-214ENST00000544501 PTPN12Q05209 780 aaKnown RBP4.1□□□□□ -1.75
YBX3-214ENST00000544501 GRM2Q14416 872 aa4.1□□□□□ -1.75
YBX3-214ENST00000544501 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.1□□□□□ -1.75
YBX3-214ENST00000544501 ZNF326Q5BKZ1 582 aaKnown RBP4.1□□□□□ -1.75
YBX3-214ENST00000544501 GDF6Q6KF10 455 aaPredicted RBP4.1□□□□□ -1.75
YBX3-214ENST00000544501 MAP4K3Q8IVH8 894 aa4.1□□□□□ -1.75
YBX3-214ENST00000544501 IL22RA1Q8N6P7 574 aa4.1□□□□□ -1.75
YBX3-214ENST00000544501 RGS22Q8NE09 1264 aa4.1□□□□□ -1.75
YBX3-214ENST00000544501 DCAF11Q8TEB1 546 aa4.1□□□□□ -1.75
YBX3-214ENST00000544501 TRIM11Q96F44 468 aa4.1□□□□□ -1.75
YBX3-214ENST00000544501 TCF12Q99081 682 aa4.1□□□□□ -1.75
YBX3-214ENST00000544501 PLVAPQ9BX97 442 aa4.1□□□□□ -1.75
YBX3-214ENST00000544501 BCL2L13Q9BXK5 485 aa4.1□□□□□ -1.75
YBX3-214ENST00000544501 BCL11AQ9H165 835 aa4.1□□□□□ -1.75
YBX3-214ENST00000544501 PODXL2Q9NZ53 605 aa4.1□□□□□ -1.75
YBX3-214ENST00000544501 WWC3Q9ULE0 1092 aa4.1□□□□□ -1.75
YBX3-214ENST00000544501 RBM47A0AV96 593 aaKnown RBP4.09□□□□□ -1.75
YBX3-214ENST00000544501 TRPA1O75762 1119 aa4.09□□□□□ -1.75
YBX3-214ENST00000544501 ITPKAP23677 461 aa4.09□□□□□ -1.75
YBX3-214ENST00000544501 GNA15P30679 374 aa4.09□□□□□ -1.75
YBX3-214ENST00000544501 IRS1P35568 1242 aa4.09□□□□□ -1.75
YBX3-214ENST00000544501 CABP4P57796 275 aa4.09□□□□□ -1.75
YBX3-214ENST00000544501 RPS26P11Q5JNZ5 115 aaPredicted RBP4.09□□□□□ -1.75
YBX3-214ENST00000544501 TRAPPC3LQ5T215 181 aa4.09□□□□□ -1.75
YBX3-214ENST00000544501 GLIS3Q8NEA6 775 aa4.09□□□□□ -1.75
YBX3-214ENST00000544501 WNT8BQ93098 351 aa4.09□□□□□ -1.75
YBX3-214ENST00000544501 HHIPQ96QV1 700 aa4.09□□□□□ -1.75
YBX3-214ENST00000544501 BCO2Q9BYV7 579 aa4.09□□□□□ -1.75
YBX3-214ENST00000544501 LACRTQ9GZZ8 138 aa4.09□□□□□ -1.75
YBX3-214ENST00000544501 ABCB6Q9NP58 842 aa4.09□□□□□ -1.75
YBX3-214ENST00000544501 SOX13Q9UN79 622 aa4.09□□□□□ -1.75
YBX3-214ENST00000544501 A0A096LPE4 126 aa4.08□□□□□ -1.76
YBX3-214ENST00000544501 A0A0A0MRY4 1105 aa4.08□□□□□ -1.76
YBX3-214ENST00000544501 TMEM238LA0A1B0GVL6 79 aa4.08□□□□□ -1.76
YBX3-214ENST00000544501 A0A1W2PPZ6 126 aa4.08□□□□□ -1.76
YBX3-214ENST00000544501 H3BRJ5 948 aa4.08□□□□□ -1.76
YBX3-214ENST00000544501 SPATA31C1P0DKV0 1188 aa4.08□□□□□ -1.76
YBX3-214ENST00000544501 GRIA4P48058 902 aa4.08□□□□□ -1.76
YBX3-214ENST00000544501 RAC1P63000 192 aa4.08□□□□□ -1.76
YBX3-214ENST00000544501 DAB2P98082 770 aa4.08□□□□□ -1.76
YBX3-214ENST00000544501 TRIM28Q13263 835 aaKnown RBP4.08□□□□□ -1.76
YBX3-214ENST00000544501 PRRT3Q5FWE3 981 aa4.08□□□□□ -1.76
YBX3-214ENST00000544501 FAM117BQ6P1L5 589 aa4.08□□□□□ -1.76
YBX3-214ENST00000544501 PI16Q6UXB8 463 aa4.08□□□□□ -1.76
YBX3-214ENST00000544501 TMC4Q7Z404 712 aa4.08□□□□□ -1.76
YBX3-214ENST00000544501 VN1R5Q7Z5H4 357 aa4.08□□□□□ -1.76
YBX3-214ENST00000544501 FBXO11Q86XK2 927 aa4.08□□□□□ -1.76
YBX3-214ENST00000544501 DMRTC2Q8IXT2 367 aaPredicted RBP4.08□□□□□ -1.76
YBX3-214ENST00000544501 ASAP3Q8TDY4 903 aa4.08□□□□□ -1.76
YBX3-214ENST00000544501 ANKRD24Q8TF21 1146 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms