RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 NCBP1Q09161 790 aaKnown RBP16.08■□□□□ 0.16
VPS33A-208ENST00000543633 CCAR1Q8IX12 1150 aaKnown RBP16.08■□□□□ 0.16
VPS33A-208ENST00000543633 DBNDD2Q9BQY9 259 aa16.08■□□□□ 0.16
VPS33A-208ENST00000543633 CGNQ9P2M7 1197 aaKnown RBP16.08■□□□□ 0.16
VPS33A-208ENST00000543633 NRBP1Q9UHY1 535 aa16.08■□□□□ 0.16
VPS33A-208ENST00000543633 FGD1P98174 961 aa16.07■□□□□ 0.16
VPS33A-208ENST00000543633 LRRC8AQ8IWT6 810 aa16.07■□□□□ 0.16
VPS33A-208ENST00000543633 CCDC112Q8NEF3 446 aa16.07■□□□□ 0.16
VPS33A-208ENST00000543633 ENGASEQ8NFI3 743 aa16.07■□□□□ 0.16
VPS33A-208ENST00000543633 KIF2AO00139 706 aaPredicted RBP16.07■□□□□ 0.16
VPS33A-208ENST00000543633 MYL6BP14649 208 aa16.07■□□□□ 0.16
VPS33A-208ENST00000543633 TATP17735 454 aaPredicted RBP16.07■□□□□ 0.16
VPS33A-208ENST00000543633 GSDMDP57764 484 aa16.07■□□□□ 0.16
VPS33A-208ENST00000543633 ZC3H6P61129 1189 aaKnown RBP16.07■□□□□ 0.16
VPS33A-208ENST00000543633 ZMYM1Q5SVZ6 1142 aa16.07■□□□□ 0.16
VPS33A-208ENST00000543633 STOX1Q6ZVD7 989 aa16.07■□□□□ 0.16
VPS33A-208ENST00000543633 CEP57L1Q8IYX8 460 aa16.07■□□□□ 0.16
VPS33A-208ENST00000543633 C16orf45Q96MC5 204 aaPredicted RBP16.07■□□□□ 0.16
VPS33A-208ENST00000543633 DNAJC2Q99543 621 aaKnown RBP16.07■□□□□ 0.16
VPS33A-208ENST00000543633 NAT10Q9H0A0 1025 aaKnown RBP16.07■□□□□ 0.16
VPS33A-208ENST00000543633 ROBO1Q9Y6N7 1651 aa16.07■□□□□ 0.16
VPS33A-208ENST00000543633 A0A1W2PQ27 194 aa16.06■□□□□ 0.16
VPS33A-208ENST00000543633 A0A1W2PQ64 194 aa16.06■□□□□ 0.16
VPS33A-208ENST00000543633 A0A1W2PQD8 194 aa16.06■□□□□ 0.16
VPS33A-208ENST00000543633 EVCP57679 992 aa16.06■□□□□ 0.16
VPS33A-208ENST00000543633 SNW1Q13573 536 aaKnown RBP16.06■□□□□ 0.16
VPS33A-208ENST00000543633 TPD52L1Q16890 204 aaPredicted RBP16.06■□□□□ 0.16
VPS33A-208ENST00000543633 C11orf57Q6ZUT1 292 aaPredicted RBP16.06■□□□□ 0.16
VPS33A-208ENST00000543633 PLBD2Q8NHP8 589 aa16.06■□□□□ 0.16
VPS33A-208ENST00000543633 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.06■□□□□ 0.16
VPS33A-208ENST00000543633 FMNL2Q96PY5 1086 aa16.06■□□□□ 0.16
VPS33A-208ENST00000543633 MEGF6O75095 1541 aa16.06■□□□□ 0.16
VPS33A-208ENST00000543633 CPDO75976 1380 aa16.06■□□□□ 0.16
VPS33A-208ENST00000543633 CTDNEP1O95476 244 aa16.06■□□□□ 0.16
VPS33A-208ENST00000543633 ATP2B3Q16720 1220 aa16.06■□□□□ 0.16
VPS33A-208ENST00000543633 CCDC144BQ3MJ40 725 aa16.06■□□□□ 0.16
VPS33A-208ENST00000543633 CCDC129Q6ZRS4 1044 aa16.06■□□□□ 0.16
VPS33A-208ENST00000543633 UBE3BQ7Z3V4 1068 aa16.06■□□□□ 0.16
VPS33A-208ENST00000543633 CCDC144CPQ8IYA2 1237 aa16.06■□□□□ 0.16
VPS33A-208ENST00000543633 IFNL2Q8IZJ0 200 aa16.06■□□□□ 0.16
VPS33A-208ENST00000543633 DDX11Q96FC9 970 aa16.06■□□□□ 0.16
VPS33A-208ENST00000543633 ZNF496Q96IT1 587 aaPredicted RBP16.06■□□□□ 0.16
VPS33A-208ENST00000543633 BPIFA3Q9BQP9 254 aa16.06■□□□□ 0.16
VPS33A-208ENST00000543633 IMPACTQ9P2X3 320 aa16.06■□□□□ 0.16
VPS33A-208ENST00000543633 BECN2A8MW95 431 aa16.05■□□□□ 0.16
VPS33A-208ENST00000543633 CEP135Q66GS9 1140 aa16.05■□□□□ 0.16
VPS33A-208ENST00000543633 NYAP1Q6ZVC0 841 aa16.05■□□□□ 0.16
VPS33A-208ENST00000543633 TTC5Q8N0Z6 440 aa16.05■□□□□ 0.16
VPS33A-208ENST00000543633 DCAF5Q96JK2 942 aa16.05■□□□□ 0.16
VPS33A-208ENST00000543633 ARID3AQ99856 593 aa16.05■□□□□ 0.16
VPS33A-208ENST00000543633 GOLPH3LQ9H4A5 285 aa16.05■□□□□ 0.16
VPS33A-208ENST00000543633 PAG1Q9NWQ8 432 aa16.05■□□□□ 0.16
VPS33A-208ENST00000543633 OGFRQ9NZT2 677 aa16.05■□□□□ 0.16
VPS33A-208ENST00000543633 UBR2Q8IWV8 1755 aa16.05■□□□□ 0.16
VPS33A-208ENST00000543633 ABCA3Q99758 1704 aa16.05■□□□□ 0.16
VPS33A-208ENST00000543633 CARMIL3Q8ND23 1372 aa16.04■□□□□ 0.16
VPS33A-208ENST00000543633 KCNJ6P48051 423 aa16.04■□□□□ 0.16
VPS33A-208ENST00000543633 SLC39A6Q13433 755 aa16.04■□□□□ 0.16
VPS33A-208ENST00000543633 LRRFIP1Q32MZ4 808 aaKnown RBP16.04■□□□□ 0.16
VPS33A-208ENST00000543633 DHX40Q8IX18 779 aaKnown RBP16.04■□□□□ 0.16
VPS33A-208ENST00000543633 USP28Q96RU2 1077 aa16.04■□□□□ 0.16
VPS33A-208ENST00000543633 SEC62Q99442 399 aaKnown RBP16.04■□□□□ 0.16
VPS33A-208ENST00000543633 RTEL1Q9NZ71 1219 aa16.04■□□□□ 0.16
VPS33A-208ENST00000543633 A0A087WZG4 1122 aa16.04■□□□□ 0.16
VPS33A-208ENST00000543633 KIF20AO95235 890 aa16.04■□□□□ 0.16
VPS33A-208ENST00000543633 DDX46Q7L014 1031 aaKnown RBP16.04■□□□□ 0.16
VPS33A-208ENST00000543633 MRPS27Q92552 414 aaKnown RBP16.04■□□□□ 0.16
VPS33A-208ENST00000543633 OSBPL5Q9H0X9 879 aaPredicted RBP16.04■□□□□ 0.16
VPS33A-208ENST00000543633 AHDC1Q5TGY3 1603 aaPredicted RBP16.04■□□□□ 0.16
VPS33A-208ENST00000543633 FAM177BA6PVY3 158 aa16.03■□□□□ 0.16
VPS33A-208ENST00000543633 YEATS4O95619 227 aa16.03■□□□□ 0.16
VPS33A-208ENST00000543633 IL15P40933 162 aaPredicted RBP16.03■□□□□ 0.16
VPS33A-208ENST00000543633 CBX1P83916 185 aa16.03■□□□□ 0.16
VPS33A-208ENST00000543633 APOBRQ0VD83 1088 aa16.03■□□□□ 0.16
VPS33A-208ENST00000543633 ADALQ6DHV7 355 aa16.03■□□□□ 0.16
VPS33A-208ENST00000543633 FSIP1Q8NA03 581 aa16.03■□□□□ 0.16
VPS33A-208ENST00000543633 ATG3Q9NT62 314 aa16.03■□□□□ 0.16
VPS33A-208ENST00000543633 ABCC12Q96J65 1359 aa16.03■□□□□ 0.16
VPS33A-208ENST00000543633 E7EWF7 191 aa16.02■□□□□ 0.16
VPS33A-208ENST00000543633 H7C1W4 665 aa16.02■□□□□ 0.16
VPS33A-208ENST00000543633 TUBB4AP04350 444 aa16.02■□□□□ 0.16
VPS33A-208ENST00000543633 FMR1NBQ8N0W7 255 aaPredicted RBP16.02■□□□□ 0.16
VPS33A-208ENST00000543633 PAPPAQ13219 1627 aa16.02■□□□□ 0.16
VPS33A-208ENST00000543633 CIAO1O76071 339 aa16.02■□□□□ 0.15
VPS33A-208ENST00000543633 PDIA3P30101 505 aaKnown RBP16.02■□□□□ 0.15
VPS33A-208ENST00000543633 CCZ1BP86790 482 aa16.02■□□□□ 0.15
VPS33A-208ENST00000543633 CCZ1P86791 482 aaPredicted RBP16.02■□□□□ 0.15
VPS33A-208ENST00000543633 FOXO4P98177 505 aa16.02■□□□□ 0.15
VPS33A-208ENST00000543633 NFATC2IPQ8NCF5 419 aa16.02■□□□□ 0.15
VPS33A-208ENST00000543633 KCNG4Q8TDN1 519 aa16.02■□□□□ 0.15
VPS33A-208ENST00000543633 CTNNA3Q9UI47 895 aa16.02■□□□□ 0.15
VPS33A-208ENST00000543633 NWD2Q9ULI1 1742 aa16.01■□□□□ 0.15
VPS33A-208ENST00000543633 WDR19Q8NEZ3 1342 aa16.01■□□□□ 0.15
VPS33A-208ENST00000543633 HSPD1P10809 573 aaKnown RBP16.01■□□□□ 0.15
VPS33A-208ENST00000543633 SKILP12757 684 aa16.01■□□□□ 0.15
VPS33A-208ENST00000543633 PTPN14Q15678 1187 aa16.01■□□□□ 0.15
VPS33A-208ENST00000543633 SLFNL1Q499Z3 407 aa16.01■□□□□ 0.15
VPS33A-208ENST00000543633 ATG9AQ7Z3C6 839 aa16.01■□□□□ 0.15
VPS33A-208ENST00000543633 BRAPQ7Z569 592 aa16.01■□□□□ 0.15
VPS33A-208ENST00000543633 CCDC150Q8NCX0 1101 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms