RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 DOT1LQ8TEK3 1739 aa6.6□□□□□ -1.35
CLIP1-217ENST00000543205 KAT6BQ8WYB5 2073 aa6.6□□□□□ -1.35
CLIP1-217ENST00000543205 SENP3-EIF4A1A0A087X0R7 540 aa6.6□□□□□ -1.35
CLIP1-217ENST00000543205 EZH2Q15910 746 aaKnown RBP6.6□□□□□ -1.35
CLIP1-217ENST00000543205 CC2D2BQ6DHV5 1058 aa6.6□□□□□ -1.35
CLIP1-217ENST00000543205 PTCRAQ6ISU1 281 aaPredicted RBP6.6□□□□□ -1.35
CLIP1-217ENST00000543205 GIMAP6Q6P9H5 292 aa6.6□□□□□ -1.35
CLIP1-217ENST00000543205 ZNF662Q6ZS27 426 aa6.6□□□□□ -1.35
CLIP1-217ENST00000543205 ANKLE1Q8NAG6 615 aa6.6□□□□□ -1.35
CLIP1-217ENST00000543205 ARMC2Q8NEN0 867 aa6.6□□□□□ -1.35
CLIP1-217ENST00000543205 ZNF526Q8TF50 670 aaPredicted RBP6.6□□□□□ -1.35
CLIP1-217ENST00000543205 CAMKK2Q96RR4 588 aa6.6□□□□□ -1.35
CLIP1-217ENST00000543205 ASAP1Q9ULH1 1129 aa6.6□□□□□ -1.35
CLIP1-217ENST00000543205 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.6□□□□□ -1.35
CLIP1-217ENST00000543205 CEMIPQ8WUJ3 1361 aa6.6□□□□□ -1.35
CLIP1-217ENST00000543205 SBF2Q86WG5 1849 aa6.59□□□□□ -1.35
CLIP1-217ENST00000543205 ANKRD62A6NC57 917 aa6.59□□□□□ -1.35
CLIP1-217ENST00000543205 BTBD11A6QL63 1104 aa6.59□□□□□ -1.35
CLIP1-217ENST00000543205 GPR37L1O60883 481 aa6.59□□□□□ -1.35
CLIP1-217ENST00000543205 TAF7Q15545 349 aaPredicted RBP6.59□□□□□ -1.35
CLIP1-217ENST00000543205 TTC5Q8N0Z6 440 aa6.59□□□□□ -1.35
CLIP1-217ENST00000543205 THUMPD2Q9BTF0 503 aaKnown RBP6.59□□□□□ -1.35
CLIP1-217ENST00000543205 ATG3Q9NT62 314 aa6.59□□□□□ -1.35
CLIP1-217ENST00000543205 PALLDQ8WX93 1383 aa6.59□□□□□ -1.35
CLIP1-217ENST00000543205 HMGB2P26583 209 aaKnown RBP6.59□□□□□ -1.36
CLIP1-217ENST00000543205 CALD1Q05682 793 aaKnown RBP6.59□□□□□ -1.36
CLIP1-217ENST00000543205 SLC39A6Q13433 755 aa6.59□□□□□ -1.36
CLIP1-217ENST00000543205 TXNRD1Q16881 649 aa6.59□□□□□ -1.36
CLIP1-217ENST00000543205 SLC27A3Q5K4L6 730 aa6.59□□□□□ -1.36
CLIP1-217ENST00000543205 CCNL1Q9UK58 526 aaPredicted RBP6.59□□□□□ -1.36
CLIP1-217ENST00000543205 GNEQ9Y223 722 aaKnown RBP6.59□□□□□ -1.36
CLIP1-217ENST00000543205 ZC3H4Q9UPT8 1303 aaKnown RBP6.59□□□□□ -1.36
CLIP1-217ENST00000543205 TOGARAM1Q9Y4F4 1720 aa6.59□□□□□ -1.36
CLIP1-217ENST00000543205 TNS1Q9HBL0 1735 aaKnown RBP6.58□□□□□ -1.36
CLIP1-217ENST00000543205 ZBTB24O43167 697 aaPredicted RBP6.58□□□□□ -1.36
CLIP1-217ENST00000543205 PTCD1O75127 700 aaKnown RBP6.58□□□□□ -1.36
CLIP1-217ENST00000543205 DGAT1O75907 488 aa6.58□□□□□ -1.36
CLIP1-217ENST00000543205 LCE2AQ5TA79 106 aaPredicted RBP6.58□□□□□ -1.36
CLIP1-217ENST00000543205 NBPF14Q5TI25 921 aa6.58□□□□□ -1.36
CLIP1-217ENST00000543205 NGEFQ8N5V2 710 aa6.58□□□□□ -1.36
CLIP1-217ENST00000543205 LAS1LQ9Y4W2 734 aaKnown RBP6.58□□□□□ -1.36
CLIP1-217ENST00000543205 BTAF1O14981 1849 aa6.58□□□□□ -1.36
CLIP1-217ENST00000543205 SCN11AQ9UI33 1791 aa6.58□□□□□ -1.36
CLIP1-217ENST00000543205 MRC1P22897 1456 aa6.57□□□□□ -1.36
CLIP1-217ENST00000543205 LOC102724428A0A0B4J2F2 783 aa6.57□□□□□ -1.36
CLIP1-217ENST00000543205 SIK1P57059 783 aa6.57□□□□□ -1.36
CLIP1-217ENST00000543205 PLA2G2CQ5R387 149 aa6.57□□□□□ -1.36
CLIP1-217ENST00000543205 HDGFL1Q5TGJ6 251 aa6.57□□□□□ -1.36
CLIP1-217ENST00000543205 ZNF790Q6PG37 636 aa6.57□□□□□ -1.36
CLIP1-217ENST00000543205 TICAM2Q86XR7 235 aa6.57□□□□□ -1.36
CLIP1-217ENST00000543205 MIS18AQ9NYP9 233 aa6.57□□□□□ -1.36
CLIP1-217ENST00000543205 ITGB4P16144 1822 aa6.57□□□□□ -1.36
CLIP1-217ENST00000543205 KCNQ4P56696 695 aa6.57□□□□□ -1.36
CLIP1-217ENST00000543205 LINC01559Q495D7 138 aa6.57□□□□□ -1.36
CLIP1-217ENST00000543205 FMNL2Q96PY5 1086 aa6.57□□□□□ -1.36
CLIP1-217ENST00000543205 PRDM16Q9HAZ2 1276 aa6.57□□□□□ -1.36
CLIP1-217ENST00000543205 BABAM1Q9NWV8 329 aa6.57□□□□□ -1.36
CLIP1-217ENST00000543205 TSPYL4Q9UJ04 414 aa6.57□□□□□ -1.36
CLIP1-217ENST00000543205 ADAMTS7Q9UKP4 1686 aa6.57□□□□□ -1.36
CLIP1-217ENST00000543205 KCNQ3O43525 872 aa6.56□□□□□ -1.36
CLIP1-217ENST00000543205 NCLP19338 710 aaKnown RBP6.56□□□□□ -1.36
CLIP1-217ENST00000543205 VAC14Q08AM6 782 aa6.56□□□□□ -1.36
CLIP1-217ENST00000543205 R3HDM1Q15032 1099 aaKnown RBP6.56□□□□□ -1.36
CLIP1-217ENST00000543205 WASHC4Q2M389 1173 aa6.56□□□□□ -1.36
CLIP1-217ENST00000543205 NOL8Q76FK4 1167 aaKnown RBP6.56□□□□□ -1.36
CLIP1-217ENST00000543205 GPKOWQ92917 476 aaPredicted RBP eCLIP6.56□□□□□ -1.36
CLIP1-217ENST00000543205 LRRC4BQ9NT99 713 aa6.56□□□□□ -1.36
CLIP1-217ENST00000543205 DLG5Q8TDM6 1919 aa6.56□□□□□ -1.36
CLIP1-217ENST00000543205 CHL1O00533 1208 aa6.55□□□□□ -1.36
CLIP1-217ENST00000543205 GNAI1P63096 354 aa6.55□□□□□ -1.36
CLIP1-217ENST00000543205 INSM1Q01101 510 aaPredicted RBP6.55□□□□□ -1.36
CLIP1-217ENST00000543205 WDR63Q8IWG1 891 aa6.55□□□□□ -1.36
CLIP1-217ENST00000543205 GIPC2Q8TF65 315 aa6.55□□□□□ -1.36
CLIP1-217ENST00000543205 BAP1Q92560 729 aa6.55□□□□□ -1.36
CLIP1-217ENST00000543205 ZNF496Q96IT1 587 aaPredicted RBP6.55□□□□□ -1.36
CLIP1-217ENST00000543205 BCL2L13Q9BXK5 485 aa6.55□□□□□ -1.36
CLIP1-217ENST00000543205 IFT57Q9NWB7 429 aa6.55□□□□□ -1.36
CLIP1-217ENST00000543205 STK32BQ9NY57 414 aa6.55□□□□□ -1.36
CLIP1-217ENST00000543205 BCCIPQ9P287 314 aaKnown RBP eCLIP6.55□□□□□ -1.36
CLIP1-217ENST00000543205 MARCH6O60337 910 aa6.55□□□□□ -1.36
CLIP1-217ENST00000543205 ITPK1Q13572 414 aa6.55□□□□□ -1.36
CLIP1-217ENST00000543205 UBXN4Q92575 508 aa6.55□□□□□ -1.36
CLIP1-217ENST00000543205 TEX13AQ9BXU3 409 aaPredicted RBP6.55□□□□□ -1.36
CLIP1-217ENST00000543205 PPP1R12CQ9BZL4 782 aa6.55□□□□□ -1.36
CLIP1-217ENST00000543205 RGPD3A6NKT7 1758 aaPredicted RBP6.54□□□□□ -1.36
CLIP1-217ENST00000543205 RGPD4Q7Z3J3 1758 aa6.54□□□□□ -1.36
CLIP1-217ENST00000543205 ZBBXA8MT70 800 aa6.54□□□□□ -1.36
CLIP1-217ENST00000543205 SNRPA1P09661 255 aaKnown RBP6.54□□□□□ -1.36
CLIP1-217ENST00000543205 EIF4A1P60842 406 aaKnown RBP6.54□□□□□ -1.36
CLIP1-217ENST00000543205 HNRNPUQ00839 825 aaKnown RBP eCLIP6.54□□□□□ -1.36
CLIP1-217ENST00000543205 TRIM32Q13049 653 aa6.54□□□□□ -1.36
CLIP1-217ENST00000543205 AGERQ15109 404 aa6.54□□□□□ -1.36
CLIP1-217ENST00000543205 PDXDC2PQ6P474 469 aa6.54□□□□□ -1.36
CLIP1-217ENST00000543205 DNAJC10Q8IXB1 793 aa6.54□□□□□ -1.36
CLIP1-217ENST00000543205 LINC00116Q8NCU8 138 aa6.54□□□□□ -1.36
CLIP1-217ENST00000543205 SLC4A9Q96Q91 983 aa6.54□□□□□ -1.36
CLIP1-217ENST00000543205 MBIPQ9NS73 344 aa6.54□□□□□ -1.36
CLIP1-217ENST00000543205 VIRMAQ69YN4 1812 aaKnown RBP6.54□□□□□ -1.36
CLIP1-217ENST00000543205 HEG1Q9ULI3 1381 aa6.54□□□□□ -1.36
CLIP1-217ENST00000543205 IL16Q14005 1332 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms