RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 MYL10Q9BUA6 226 aa19.97■□□□□ 0.79
USP28-208ENST00000540438 IRS4O14654 1257 aaPredicted RBP19.97■□□□□ 0.79
USP28-208ENST00000540438 ZMYM1Q5SVZ6 1142 aa19.97■□□□□ 0.79
USP28-208ENST00000540438 SOS2Q07890 1332 aaPredicted RBP19.96■□□□□ 0.79
USP28-208ENST00000540438 EP400Q96L91 3159 aa19.96■□□□□ 0.79
USP28-208ENST00000540438 PHF14O94880 888 aa19.96■□□□□ 0.79
USP28-208ENST00000540438 MCAMP43121 646 aa19.96■□□□□ 0.79
USP28-208ENST00000540438 PHKA1P46020 1223 aa19.96■□□□□ 0.79
USP28-208ENST00000540438 ANKRD1Q15327 319 aa19.96■□□□□ 0.79
USP28-208ENST00000540438 USPL1Q5W0Q7 1092 aa19.96■□□□□ 0.79
USP28-208ENST00000540438 DHX32Q7L7V1 743 aaKnown RBP19.96■□□□□ 0.79
USP28-208ENST00000540438 ATP2B3Q16720 1220 aa19.96■□□□□ 0.79
USP28-208ENST00000540438 SENP2Q9HC62 589 aa19.96■□□□□ 0.79
USP28-208ENST00000540438 HMG20BQ9P0W2 317 aa19.96■□□□□ 0.79
USP28-208ENST00000540438 KDM4FA0A1W2PPD8 638 aa19.95■□□□□ 0.78
USP28-208ENST00000540438 STARD3NLO95772 234 aa19.95■□□□□ 0.78
USP28-208ENST00000540438 SLC9C2Q5TAH2 1124 aa19.95■□□□□ 0.78
USP28-208ENST00000540438 BICDL1Q6ZP65 573 aa19.95■□□□□ 0.78
USP28-208ENST00000540438 ISCA1Q9BUE6 129 aa19.95■□□□□ 0.78
USP28-208ENST00000540438 TNMDQ9H2S6 317 aa19.95■□□□□ 0.78
USP28-208ENST00000540438 NOL7Q9UMY1 257 aaKnown RBP19.95■□□□□ 0.78
USP28-208ENST00000540438 FOXP2O15409 715 aa19.95■□□□□ 0.78
USP28-208ENST00000540438 FAM182BQ5T319 152 aa19.95■□□□□ 0.78
USP28-208ENST00000540438 NUP62CLQ9H1M0 184 aa19.95■□□□□ 0.78
USP28-208ENST00000540438 ZKSCAN5Q9Y2L8 839 aa19.95■□□□□ 0.78
USP28-208ENST00000540438 NSUN7Q8NE18 718 aaKnown RBP19.94■□□□□ 0.78
USP28-208ENST00000540438 TTLL11Q8NHH1 800 aa19.94■□□□□ 0.78
USP28-208ENST00000540438 CPDO75976 1380 aa19.94■□□□□ 0.78
USP28-208ENST00000540438 NLRP10Q86W26 655 aa19.94■□□□□ 0.78
USP28-208ENST00000540438 ANO6Q4KMQ2 910 aa19.94■□□□□ 0.78
USP28-208ENST00000540438 DNAJC25Q9H1X3 360 aa19.94■□□□□ 0.78
USP28-208ENST00000540438 TOMM22Q9NS69 142 aa19.94■□□□□ 0.78
USP28-208ENST00000540438 ISM2Q6H9L7 571 aa19.93■□□□□ 0.78
USP28-208ENST00000540438 DZIP3Q86Y13 1208 aaKnown RBP19.93■□□□□ 0.78
USP28-208ENST00000540438 KIF1AQ12756 1690 aa19.93■□□□□ 0.78
USP28-208ENST00000540438 SMIM22K7EJ46 135 aa19.93■□□□□ 0.78
USP28-208ENST00000540438 KRT32Q14532 448 aa19.93■□□□□ 0.78
USP28-208ENST00000540438 TMEM87AQ8NBN3 555 aa19.93■□□□□ 0.78
USP28-208ENST00000540438 USP28Q96RU2 1077 aa19.93■□□□□ 0.78
USP28-208ENST00000540438 PIH1D3Q9NQM4 214 aaKnown RBP19.93■□□□□ 0.78
USP28-208ENST00000540438 ARFGEF2Q9Y6D5 1785 aa19.93■□□□□ 0.78
USP28-208ENST00000540438 GPAA1O43292 621 aa19.92■□□□□ 0.78
USP28-208ENST00000540438 PDCP20941 246 aa19.92■□□□□ 0.78
USP28-208ENST00000540438 WWC3Q9ULE0 1092 aa19.92■□□□□ 0.78
USP28-208ENST00000540438 KLF18A0A0U1RQI7 1052 aa19.92■□□□□ 0.78
USP28-208ENST00000540438 PDIA3P30101 505 aaKnown RBP19.92■□□□□ 0.78
USP28-208ENST00000540438 RRP12Q5JTH9 1297 aaKnown RBP19.92■□□□□ 0.78
USP28-208ENST00000540438 ZKSCAN3Q9BRR0 538 aa19.92■□□□□ 0.78
USP28-208ENST00000540438 EXOC5O00471 708 aa19.92■□□□□ 0.78
USP28-208ENST00000540438 PIP4K2BP78356 416 aa19.92■□□□□ 0.78
USP28-208ENST00000540438 ZBTB38Q8NAP3 1195 aaPredicted RBP19.92■□□□□ 0.78
USP28-208ENST00000540438 TYRO3Q06418 890 aa19.91■□□□□ 0.78
USP28-208ENST00000540438 SLC4A8Q2Y0W8 1093 aa19.91■□□□□ 0.78
USP28-208ENST00000540438 CMTR1Q8N1G2 835 aaKnown RBP19.91■□□□□ 0.78
USP28-208ENST00000540438 NRBP1Q9UHY1 535 aa19.91■□□□□ 0.78
USP28-208ENST00000540438 PALLDQ8WX93 1383 aa19.91■□□□□ 0.78
USP28-208ENST00000540438 KCNQ2O43526 872 aa19.91■□□□□ 0.78
USP28-208ENST00000540438 PRC1O43663 620 aa19.91■□□□□ 0.78
USP28-208ENST00000540438 RESTQ13127 1097 aa19.91■□□□□ 0.78
USP28-208ENST00000540438 MAP3K11Q16584 847 aa19.91■□□□□ 0.78
USP28-208ENST00000540438 GIGYF2Q6Y7W6 1299 aaKnown RBP19.91■□□□□ 0.78
USP28-208ENST00000540438 DRC7Q8IY82 874 aa19.91■□□□□ 0.78
USP28-208ENST00000540438 CCDC39Q9UFE4 941 aa19.91■□□□□ 0.78
USP28-208ENST00000540438 SRCAPQ6ZRS2 3230 aa19.9■□□□□ 0.78
USP28-208ENST00000540438 ME1P48163 572 aa19.9■□□□□ 0.78
USP28-208ENST00000540438 FAM13BQ9NYF5 915 aa19.9■□□□□ 0.78
USP28-208ENST00000540438 JAG2Q9Y219 1238 aa19.9■□□□□ 0.78
USP28-208ENST00000540438 UBN2Q6ZU65 1347 aa19.9■□□□□ 0.78
USP28-208ENST00000540438 GOLGA8BA8MQT2 603 aa19.9■□□□□ 0.78
USP28-208ENST00000540438 CYP19A1P11511 503 aaPredicted RBP19.9■□□□□ 0.78
USP28-208ENST00000540438 NKX1-1Q15270 411 aaPredicted RBP19.9■□□□□ 0.78
USP28-208ENST00000540438 MIGA1Q8NAN2 632 aa19.9■□□□□ 0.78
USP28-208ENST00000540438 MAP3K15Q6ZN16 1313 aa19.9■□□□□ 0.78
USP28-208ENST00000540438 ADD1P35611 737 aaKnown RBP19.89■□□□□ 0.78
USP28-208ENST00000540438 PHKBQ93100 1093 aa19.89■□□□□ 0.78
USP28-208ENST00000540438 HELLSQ9NRZ9 838 aa19.89■□□□□ 0.78
USP28-208ENST00000540438 MRVI1Q9Y6F6 885 aa19.89■□□□□ 0.78
USP28-208ENST00000540438 GOLPH3LQ9H4A5 285 aa19.89■□□□□ 0.77
USP28-208ENST00000540438 B4E1Z4 1266 aa19.89■□□□□ 0.77
USP28-208ENST00000540438 PRKAB2O43741 272 aa19.89■□□□□ 0.77
USP28-208ENST00000540438 CTDSPL2Q05D32 466 aa19.89■□□□□ 0.77
USP28-208ENST00000540438 FUCA2Q9BTY2 467 aa19.89■□□□□ 0.77
USP28-208ENST00000540438 SH3TC1Q8TE82 1336 aa19.89■□□□□ 0.77
USP28-208ENST00000540438 CRYBG1Q9Y4K1 1723 aa19.89■□□□□ 0.77
USP28-208ENST00000540438 A0A1B0GVL5 298 aa19.88■□□□□ 0.77
USP28-208ENST00000540438 ANKRD18BA2A2Z9 1011 aa19.88■□□□□ 0.77
USP28-208ENST00000540438 PCCAP05165 728 aaPredicted RBP19.88■□□□□ 0.77
USP28-208ENST00000540438 CCDC192P0DO97 292 aa19.88■□□□□ 0.77
USP28-208ENST00000540438 MICU3Q86XE3 530 aa19.88■□□□□ 0.77
USP28-208ENST00000540438 KCPQ6ZWJ8 1503 aa19.88■□□□□ 0.77
USP28-208ENST00000540438 FDPSP14324 419 aaKnown RBP19.88■□□□□ 0.77
USP28-208ENST00000540438 ATP6V1AP38606 617 aa19.88■□□□□ 0.77
USP28-208ENST00000540438 CTSWP56202 376 aa19.88■□□□□ 0.77
USP28-208ENST00000540438 EXOSC10Q01780 885 aaKnown RBP19.88■□□□□ 0.77
USP28-208ENST00000540438 TSGA10IPQ3SY00 556 aa19.88■□□□□ 0.77
USP28-208ENST00000540438 PTF1AQ7RTS3 328 aa19.88■□□□□ 0.77
USP28-208ENST00000540438 RIPOR2Q9Y4F9 1068 aa19.88■□□□□ 0.77
USP28-208ENST00000540438 BIN1O00499 593 aa19.87■□□□□ 0.77
USP28-208ENST00000540438 LRMPQ12912 555 aa19.87■□□□□ 0.77
USP28-208ENST00000540438 SUSD4Q5VX71 490 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms