RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 CCDC87Q9NVE4 849 aa12.63□□□□□ -0.39
CLIP1-213ENST00000540338 PRC1O43663 620 aa12.63□□□□□ -0.39
CLIP1-213ENST00000540338 TOM1O60784 492 aa12.63□□□□□ -0.39
CLIP1-213ENST00000540338 CAVIN4Q5BKX8 364 aa12.63□□□□□ -0.39
CLIP1-213ENST00000540338 LLPHQ9BRT6 129 aaKnown RBP12.63□□□□□ -0.39
CLIP1-213ENST00000540338 ZBTB1Q9Y2K1 713 aa12.63□□□□□ -0.39
CLIP1-213ENST00000540338 LTN1O94822 1766 aa12.63□□□□□ -0.39
CLIP1-213ENST00000540338 PPFIA3O75145 1194 aa12.62□□□□□ -0.39
CLIP1-213ENST00000540338 LARGE1O95461 756 aa12.62□□□□□ -0.39
CLIP1-213ENST00000540338 TPM3P06753 285 aa12.62□□□□□ -0.39
CLIP1-213ENST00000540338 HCLS1P14317 486 aaPredicted RBP12.62□□□□□ -0.39
CLIP1-213ENST00000540338 RFX5P48382 616 aaPredicted RBP12.62□□□□□ -0.39
CLIP1-213ENST00000540338 PARP10Q53GL7 1025 aa12.62□□□□□ -0.39
CLIP1-213ENST00000540338 ZMYM1Q5SVZ6 1142 aa12.62□□□□□ -0.39
CLIP1-213ENST00000540338 STK11IPQ8N1F8 1099 aa12.62□□□□□ -0.39
CLIP1-213ENST00000540338 NOL10Q9BSC4 688 aaKnown RBP12.62□□□□□ -0.39
CLIP1-213ENST00000540338 ISCA1Q9BUE6 129 aa12.62□□□□□ -0.39
CLIP1-213ENST00000540338 TRIM5Q9C035 493 aa12.62□□□□□ -0.39
CLIP1-213ENST00000540338 ORC3Q9UBD5 711 aaPredicted RBP12.62□□□□□ -0.39
CLIP1-213ENST00000540338 CYP21A2P08686 494 aa12.62□□□□□ -0.39
CLIP1-213ENST00000540338 HSPD1P10809 573 aaKnown RBP12.62□□□□□ -0.39
CLIP1-213ENST00000540338 CLCN1P35523 988 aa12.62□□□□□ -0.39
CLIP1-213ENST00000540338 TRIM22Q8IYM9 498 aa12.62□□□□□ -0.39
CLIP1-213ENST00000540338 NAT10Q9H0A0 1025 aaKnown RBP12.62□□□□□ -0.39
CLIP1-213ENST00000540338 PTPDC1A2A3K4 754 aa12.61□□□□□ -0.39
CLIP1-213ENST00000540338 IL6STP40189 918 aaPredicted RBP12.61□□□□□ -0.39
CLIP1-213ENST00000540338 PUM3Q15397 648 aaKnown RBP12.61□□□□□ -0.39
CLIP1-213ENST00000540338 JMYQ8N9B5 988 aa12.61□□□□□ -0.39
CLIP1-213ENST00000540338 USP25Q9UHP3 1055 aa12.61□□□□□ -0.39
CLIP1-213ENST00000540338 ZPR1O75312 459 aa12.61□□□□□ -0.39
CLIP1-213ENST00000540338 NLRP10Q86W26 655 aa12.61□□□□□ -0.39
CLIP1-213ENST00000540338 GTF3C6Q969F1 213 aa12.61□□□□□ -0.39
CLIP1-213ENST00000540338 E7EWF7 191 aa12.61□□□□□ -0.39
CLIP1-213ENST00000540338 TRIM28Q13263 835 aaKnown RBP12.61□□□□□ -0.39
CLIP1-213ENST00000540338 CDC37L1Q7L3B6 337 aa12.61□□□□□ -0.39
CLIP1-213ENST00000540338 TICAM2Q86XR7 235 aa12.61□□□□□ -0.39
CLIP1-213ENST00000540338 AMOTL1Q8IY63 956 aa12.61□□□□□ -0.39
CLIP1-213ENST00000540338 CKAP2LQ8IYA6 745 aa12.61□□□□□ -0.39
CLIP1-213ENST00000540338 MPNDQ8N594 471 aa12.61□□□□□ -0.39
CLIP1-213ENST00000540338 GREM2Q9H772 168 aa12.61□□□□□ -0.39
CLIP1-213ENST00000540338 GPAA1O43292 621 aa12.61□□□□□ -0.39
CLIP1-213ENST00000540338 ADORA1P30542 326 aa12.61□□□□□ -0.39
CLIP1-213ENST00000540338 FAM173BQ6P4H8 233 aa12.61□□□□□ -0.39
CLIP1-213ENST00000540338 FBXW7Q969H0 707 aa12.61□□□□□ -0.39
CLIP1-213ENST00000540338 PLEKHG2Q9H7P9 1386 aa12.61□□□□□ -0.39
CLIP1-213ENST00000540338 XBP1P17861 261 aa12.6□□□□□ -0.39
CLIP1-213ENST00000540338 LPIN2Q92539 896 aa12.6□□□□□ -0.39
CLIP1-213ENST00000540338 UBAC1Q9BSL1 405 aa12.6□□□□□ -0.39
CLIP1-213ENST00000540338 IFIT3O14879 490 aaKnown RBP12.6□□□□□ -0.39
CLIP1-213ENST00000540338 JAK2O60674 1132 aa12.6□□□□□ -0.39
CLIP1-213ENST00000540338 ATG9AQ7Z3C6 839 aa12.6□□□□□ -0.39
CLIP1-213ENST00000540338 RAB11FIP4Q86YS3 637 aa12.6□□□□□ -0.39
CLIP1-213ENST00000540338 DACT1Q9NYF0 836 aa12.6□□□□□ -0.39
CLIP1-213ENST00000540338 ANKRD18AQ8IVF6 992 aa12.59□□□□□ -0.39
CLIP1-213ENST00000540338 RFX7Q2KHR2 1363 aa12.59□□□□□ -0.39
CLIP1-213ENST00000540338 TMEM67Q5HYA8 995 aa12.59□□□□□ -0.39
CLIP1-213ENST00000540338 MROH5Q6ZUA9 1318 aa12.59□□□□□ -0.39
CLIP1-213ENST00000540338 CACNA1FO60840 1977 aa12.59□□□□□ -0.39
CLIP1-213ENST00000540338 METAP2P50579 478 aaKnown RBP eCLIP12.59□□□□□ -0.39
CLIP1-213ENST00000540338 NUP133Q8WUM0 1156 aa12.59□□□□□ -0.39
CLIP1-213ENST00000540338 WASF1Q92558 559 aa12.59□□□□□ -0.39
CLIP1-213ENST00000540338 RNF41Q9H4P4 317 aaPredicted RBP12.59□□□□□ -0.39
CLIP1-213ENST00000540338 RRAGDQ9NQL2 400 aaPredicted RBP12.59□□□□□ -0.39
CLIP1-213ENST00000540338 SLC12A7Q9Y666 1083 aa12.59□□□□□ -0.39
CLIP1-213ENST00000540338 MINDY4BA8MYZ0 360 aa12.59□□□□□ -0.39
CLIP1-213ENST00000540338 ERVV-1B6SEH8 477 aa12.59□□□□□ -0.39
CLIP1-213ENST00000540338 CTAGE5O15320 804 aa12.59□□□□□ -0.39
CLIP1-213ENST00000540338 SLC3A2P08195 630 aaKnown RBP12.59□□□□□ -0.39
CLIP1-213ENST00000540338 HLFQ16534 295 aa12.59□□□□□ -0.39
CLIP1-213ENST00000540338 GLIPR1L2Q4G1C9 344 aa12.59□□□□□ -0.39
CLIP1-213ENST00000540338 HS1BP3Q53T59 392 aa12.59□□□□□ -0.39
CLIP1-213ENST00000540338 SPC24Q8NBT2 197 aa12.59□□□□□ -0.39
CLIP1-213ENST00000540338 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.59□□□□□ -0.39
CLIP1-213ENST00000540338 TMX4Q9H1E5 349 aaPredicted RBP12.59□□□□□ -0.39
CLIP1-213ENST00000540338 HOOK1Q9UJC3 728 aaKnown RBP12.59□□□□□ -0.39
CLIP1-213ENST00000540338 MFSD6Q6ZSS7 791 aa12.58□□□□□ -0.4
CLIP1-213ENST00000540338 MAST3O60307 1309 aa12.58□□□□□ -0.4
CLIP1-213ENST00000540338 GOLGA8AA7E2F4 631 aa12.58□□□□□ -0.4
CLIP1-213ENST00000540338 PDE8BO95263 885 aa12.58□□□□□ -0.4
CLIP1-213ENST00000540338 TTLL5Q6EMB2 1281 aa12.58□□□□□ -0.4
CLIP1-213ENST00000540338 TTLL11Q8NHH1 800 aa12.58□□□□□ -0.4
CLIP1-213ENST00000540338 ADAMTSL3P82987 1691 aa12.58□□□□□ -0.4
CLIP1-213ENST00000540338 ADCY5O95622 1261 aa12.58□□□□□ -0.4
CLIP1-213ENST00000540338 CCAR1Q8IX12 1150 aaKnown RBP12.58□□□□□ -0.4
CLIP1-213ENST00000540338 MAGEB6Q8N7X4 407 aa12.58□□□□□ -0.4
CLIP1-213ENST00000540338 NCOA5Q9HCD5 579 aaKnown RBP12.58□□□□□ -0.4
CLIP1-213ENST00000540338 R3HCC1Q9Y3T6 440 aaKnown RBP12.58□□□□□ -0.4
CLIP1-213ENST00000540338 PFKFB2O60825 505 aa12.57□□□□□ -0.4
CLIP1-213ENST00000540338 TSGA10IPQ3SY00 556 aa12.57□□□□□ -0.4
CLIP1-213ENST00000540338 MICU3Q86XE3 530 aa12.57□□□□□ -0.4
CLIP1-213ENST00000540338 POLR3DP05423 398 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-213ENST00000540338 IARSP41252 1262 aaKnown RBP12.57□□□□□ -0.4
CLIP1-213ENST00000540338 FSIP1Q8NA03 581 aa12.57□□□□□ -0.4
CLIP1-213ENST00000540338 NSFL1CQ9UNZ2 370 aaKnown RBP12.57□□□□□ -0.4
CLIP1-213ENST00000540338 LOC102724428A0A0B4J2F2 783 aa12.57□□□□□ -0.4
CLIP1-213ENST00000540338 CCDC196A0A1B0GTZ2 297 aa12.57□□□□□ -0.4
CLIP1-213ENST00000540338 CYP19A1P11511 503 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-213ENST00000540338 SIK1P57059 783 aa12.57□□□□□ -0.4
CLIP1-213ENST00000540338 PPP1R9BQ96SB3 815 aa12.57□□□□□ -0.4
CLIP1-213ENST00000540338 IQSEC3Q9UPP2 1182 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms