RNA–Protein interactions for RNA: ENST00000539548.6

CDH13-204, Transcript of cadherin 13, humanhuman

TSL 2

Gene CDH13, Length 2,199 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-204ENST00000539548 USP16Q9Y5T5 823 aa11.33□□□□□ -0.6
CDH13-204ENST00000539548 TMEM94Q12767 1356 aa11.32□□□□□ -0.6
CDH13-204ENST00000539548 SALL1Q9NSC2 1324 aa11.32□□□□□ -0.6
CDH13-204ENST00000539548 A0A087WZG4 1122 aa11.32□□□□□ -0.6
CDH13-204ENST00000539548 PHKG2P15735 406 aa11.32□□□□□ -0.6
CDH13-204ENST00000539548 U2AF2P26368 475 aaKnown RBP eCLIP11.32□□□□□ -0.6
CDH13-204ENST00000539548 ZMYM1Q5SVZ6 1142 aa11.32□□□□□ -0.6
CDH13-204ENST00000539548 CEP135Q66GS9 1140 aa11.32□□□□□ -0.6
CDH13-204ENST00000539548 DHX40Q8IX18 779 aaKnown RBP11.32□□□□□ -0.6
CDH13-204ENST00000539548 RAPGEF4Q8WZA2 1011 aa11.32□□□□□ -0.6
CDH13-204ENST00000539548 OGFRQ9NZT2 677 aa11.32□□□□□ -0.6
CDH13-204ENST00000539548 ERBB3P21860 1342 aa11.32□□□□□ -0.6
CDH13-204ENST00000539548 SPDYE4A6NLX3 237 aa11.31□□□□□ -0.6
CDH13-204ENST00000539548 BECN2A8MW95 431 aa11.31□□□□□ -0.6
CDH13-204ENST00000539548 PAG1Q9NWQ8 432 aa11.31□□□□□ -0.6
CDH13-204ENST00000539548 CGNQ9P2M7 1197 aaKnown RBP11.31□□□□□ -0.6
CDH13-204ENST00000539548 E7EWF7 191 aa11.31□□□□□ -0.6
CDH13-204ENST00000539548 PDIA3P30101 505 aaKnown RBP11.31□□□□□ -0.6
CDH13-204ENST00000539548 LMOD2Q6P5Q4 547 aa11.31□□□□□ -0.6
CDH13-204ENST00000539548 NYAP1Q6ZVC0 841 aa11.31□□□□□ -0.6
CDH13-204ENST00000539548 FBXL16Q8N461 479 aa11.31□□□□□ -0.6
CDH13-204ENST00000539548 FSIP1Q8NA03 581 aa11.31□□□□□ -0.6
CDH13-204ENST00000539548 FTOQ9C0B1 505 aaKnown RBP eCLIP11.31□□□□□ -0.6
CDH13-204ENST00000539548 NAT10Q9H0A0 1025 aaKnown RBP11.31□□□□□ -0.6
CDH13-204ENST00000539548 CTNNA3Q9UI47 895 aa11.31□□□□□ -0.6
CDH13-204ENST00000539548 H7C1W4 665 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 SKILP12757 684 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 TATP17735 454 aaPredicted RBP11.3□□□□□ -0.6
CDH13-204ENST00000539548 EVCP57679 992 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 CCT2P78371 535 aaKnown RBP11.3□□□□□ -0.6
CDH13-204ENST00000539548 FOXO4P98177 505 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 ARID5BQ14865 1188 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 LMBR1LQ6UX01 489 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 ATG9AQ7Z3C6 839 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 KRT28Q7Z3Y7 464 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 CEP57L1Q8IYX8 460 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 IFNL2Q8IZJ0 200 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 PLBD2Q8NHP8 589 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 FMNL2Q96PY5 1086 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 RTEL1Q9NZ71 1219 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 MST1RQ04912 1400 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 ABCC6O95255 1503 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 A0A1W2PQ27 194 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 A0A1W2PQ64 194 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 A0A1W2PQD8 194 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 CCDC69A6NI79 296 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 ATP5J2-PTCD1G3V325 749 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 GOLIM4O00461 696 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 PTCD1O75127 700 aaKnown RBP11.3□□□□□ -0.6
CDH13-204ENST00000539548 HSPD1P10809 573 aaKnown RBP11.3□□□□□ -0.6
CDH13-204ENST00000539548 ME1P48163 572 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 CCZ1BP86790 482 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 CCZ1P86791 482 aaPredicted RBP11.3□□□□□ -0.6
CDH13-204ENST00000539548 PTPN14Q15678 1187 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 ADALQ6DHV7 355 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 FMR1NBQ8N0W7 255 aaPredicted RBP11.3□□□□□ -0.6
CDH13-204ENST00000539548 TTC5Q8N0Z6 440 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 SPEF2Q9C093 1822 aa11.3□□□□□ -0.6
CDH13-204ENST00000539548 SOCS7O14512 581 aa11.29□□□□□ -0.6
CDH13-204ENST00000539548 RNF113AO15541 343 aaKnown RBP11.29□□□□□ -0.6
CDH13-204ENST00000539548 FOSBP53539 338 aa11.29□□□□□ -0.6
CDH13-204ENST00000539548 GSDMDP57764 484 aa11.29□□□□□ -0.6
CDH13-204ENST00000539548 MRPS27Q92552 414 aaKnown RBP11.29□□□□□ -0.6
CDH13-204ENST00000539548 NEUROD6Q96NK8 337 aa11.29□□□□□ -0.6
CDH13-204ENST00000539548 NCOA5Q9HCD5 579 aaKnown RBP11.29□□□□□ -0.6
CDH13-204ENST00000539548 IMPACTQ9P2X3 320 aa11.29□□□□□ -0.6
CDH13-204ENST00000539548 PCDHA7Q9UN72 937 aa11.29□□□□□ -0.6
CDH13-204ENST00000539548 CARMIL3Q8ND23 1372 aa11.28□□□□□ -0.6
CDH13-204ENST00000539548 PLEKHG2Q9H7P9 1386 aa11.28□□□□□ -0.6
CDH13-204ENST00000539548 USP27XA6NNY8 438 aa11.28□□□□□ -0.6
CDH13-204ENST00000539548 FDPSP14324 419 aaKnown RBP11.28□□□□□ -0.6
CDH13-204ENST00000539548 IL15P40933 162 aaPredicted RBP11.28□□□□□ -0.6
CDH13-204ENST00000539548 CCAR2Q8N163 923 aaKnown RBP11.28□□□□□ -0.6
CDH13-204ENST00000539548 DCAF5Q96JK2 942 aa11.28□□□□□ -0.6
CDH13-204ENST00000539548 BPIFA3Q9BQP9 254 aa11.28□□□□□ -0.6
CDH13-204ENST00000539548 OSBPL5Q9H0X9 879 aaPredicted RBP11.28□□□□□ -0.6
CDH13-204ENST00000539548 KIF20AO95235 890 aa11.28□□□□□ -0.6
CDH13-204ENST00000539548 PIP4K2AP48426 406 aaPredicted RBP11.28□□□□□ -0.6
CDH13-204ENST00000539548 NAA30Q147X3 362 aaPredicted RBP11.28□□□□□ -0.6
CDH13-204ENST00000539548 AOPEPQ8N6M6 819 aa11.28□□□□□ -0.6
CDH13-204ENST00000539548 NLRP2Q9NX02 1062 aa11.28□□□□□ -0.6
CDH13-204ENST00000539548 DDX41Q9UJV9 622 aaKnown RBP11.28□□□□□ -0.6
CDH13-204ENST00000539548 LAMB4A4D0S4 1761 aa11.28□□□□□ -0.6
CDH13-204ENST00000539548 LTBP4Q8N2S1 1624 aa11.27□□□□□ -0.6
CDH13-204ENST00000539548 A0A0G2JLW4 131 aa11.27□□□□□ -0.6
CDH13-204ENST00000539548 KIF2AO00139 706 aaPredicted RBP11.27□□□□□ -0.6
CDH13-204ENST00000539548 TIMM10P62072 90 aa11.27□□□□□ -0.6
CDH13-204ENST00000539548 GUCY1B3Q02153 619 aa11.27□□□□□ -0.6
CDH13-204ENST00000539548 SLFNL1Q499Z3 407 aa11.27□□□□□ -0.6
CDH13-204ENST00000539548 FILIP1Q7Z7B0 1213 aa11.27□□□□□ -0.6
CDH13-204ENST00000539548 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.27□□□□□ -0.6
CDH13-204ENST00000539548 ZNF592Q92610 1267 aa11.27□□□□□ -0.6
CDH13-204ENST00000539548 SDF4Q9BRK5 362 aa11.27□□□□□ -0.6
CDH13-204ENST00000539548 MORC2Q9Y6X9 1032 aaPredicted RBP11.27□□□□□ -0.6
CDH13-204ENST00000539548 KIF1AQ12756 1690 aa11.27□□□□□ -0.61
CDH13-204ENST00000539548 MAST3O60307 1309 aa11.27□□□□□ -0.61
CDH13-204ENST00000539548 ZNF142P52746 1687 aaPredicted RBP11.27□□□□□ -0.61
CDH13-204ENST00000539548 ZC3H6P61129 1189 aaKnown RBP11.27□□□□□ -0.61
CDH13-204ENST00000539548 DHX8Q14562 1220 aaKnown RBP11.27□□□□□ -0.61
CDH13-204ENST00000539548 NBPF11Q86T75 865 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms