RNA–Protein interactions for RNA: ENST00000538708.5

PTPRB-204, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best) BASIC

Gene PTPRB, Length 5,839 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-204ENST00000538708 DLGAP5Q15398 846 aa10.85□□□□□ -0.67
PTPRB-204ENST00000538708 ARHGAP29Q52LW3 1261 aa10.85□□□□□ -0.67
PTPRB-204ENST00000538708 FAM43AQ8N2R8 423 aa10.85□□□□□ -0.67
PTPRB-204ENST00000538708 LRRC2Q9BYS8 371 aa10.85□□□□□ -0.67
PTPRB-204ENST00000538708 GOPCQ9HD26 462 aa10.85□□□□□ -0.67
PTPRB-204ENST00000538708 GPCPD1Q9NPB8 672 aa10.85□□□□□ -0.67
PTPRB-204ENST00000538708 EZRP15311 586 aaKnown RBP10.85□□□□□ -0.67
PTPRB-204ENST00000538708 FERMT1Q9BQL6 677 aa10.85□□□□□ -0.67
PTPRB-204ENST00000538708 ALG1Q9BT22 464 aa10.85□□□□□ -0.67
PTPRB-204ENST00000538708 CSADQ9Y600 493 aa10.85□□□□□ -0.67
PTPRB-204ENST00000538708 PIK3C2GO75747 1445 aa10.85□□□□□ -0.67
PTPRB-204ENST00000538708 LPXNO60711 386 aa10.85□□□□□ -0.67
PTPRB-204ENST00000538708 NMIQ13287 307 aaPredicted RBP10.85□□□□□ -0.67
PTPRB-204ENST00000538708 ZBED4O75132 1171 aa10.84□□□□□ -0.67
PTPRB-204ENST00000538708 FAM193AP78312 1265 aa10.84□□□□□ -0.67
PTPRB-204ENST00000538708 TCP10Q12799 353 aa10.84□□□□□ -0.67
PTPRB-204ENST00000538708 KRT27Q7Z3Y8 459 aa10.84□□□□□ -0.67
PTPRB-204ENST00000538708 SMCR8Q8TEV9 937 aaPredicted RBP10.84□□□□□ -0.67
PTPRB-204ENST00000538708 YEATS2Q9ULM3 1422 aa10.84□□□□□ -0.67
PTPRB-204ENST00000538708 IRX3P78415 501 aaPredicted RBP10.84□□□□□ -0.67
PTPRB-204ENST00000538708 MRPS9P82933 396 aaKnown RBP10.84□□□□□ -0.67
PTPRB-204ENST00000538708 ARHGAP45Q92619 1136 aa10.84□□□□□ -0.67
PTPRB-204ENST00000538708 PTPDC1A2A3K4 754 aa10.84□□□□□ -0.67
PTPRB-204ENST00000538708 FAM13AO94988 1023 aa10.84□□□□□ -0.67
PTPRB-204ENST00000538708 TBC1D5Q92609 795 aa10.84□□□□□ -0.67
PTPRB-204ENST00000538708 A1BGP04217 495 aa10.84□□□□□ -0.67
PTPRB-204ENST00000538708 FAM196AQ6ZSG2 479 aa10.84□□□□□ -0.67
PTPRB-204ENST00000538708 FILIP1Q7Z7B0 1213 aa10.84□□□□□ -0.67
PTPRB-204ENST00000538708 CFAP43Q8NDM7 1665 aa10.84□□□□□ -0.67
PTPRB-204ENST00000538708 TMEM94Q12767 1356 aa10.84□□□□□ -0.67
PTPRB-204ENST00000538708 LMAN1P49257 510 aa10.83□□□□□ -0.67
PTPRB-204ENST00000538708 MBD4O95243 580 aa10.83□□□□□ -0.68
PTPRB-204ENST00000538708 DNA2P51530 1060 aa10.83□□□□□ -0.68
PTPRB-204ENST00000538708 BRF1Q92994 677 aa10.83□□□□□ -0.68
PTPRB-204ENST00000538708 METTL22Q9BUU2 404 aaPredicted RBP10.83□□□□□ -0.68
PTPRB-204ENST00000538708 TAF5LO75529 589 aa10.83□□□□□ -0.68
PTPRB-204ENST00000538708 KRT2P35908 639 aa10.83□□□□□ -0.68
PTPRB-204ENST00000538708 KANK3Q6NY19 840 aa10.83□□□□□ -0.68
PTPRB-204ENST00000538708 Q6ZUG5 572 aa10.83□□□□□ -0.68
PTPRB-204ENST00000538708 DNAJC10Q8IXB1 793 aa10.83□□□□□ -0.68
PTPRB-204ENST00000538708 RMND1Q9NWS8 449 aa10.83□□□□□ -0.68
PTPRB-204ENST00000538708 NOP56O00567 594 aaKnown RBP10.83□□□□□ -0.68
PTPRB-204ENST00000538708 HSP90AA2PQ14568 343 aaPredicted RBP10.83□□□□□ -0.68
PTPRB-204ENST00000538708 SPOUT1Q5T280 376 aaKnown RBP10.83□□□□□ -0.68
PTPRB-204ENST00000538708 WDR66Q8TBY9 1149 aa10.83□□□□□ -0.68
PTPRB-204ENST00000538708 IMPG2Q9BZV3 1241 aa10.83□□□□□ -0.68
PTPRB-204ENST00000538708 YEATS4O95619 227 aa10.83□□□□□ -0.68
PTPRB-204ENST00000538708 LRRC45Q96CN5 670 aa10.83□□□□□ -0.68
PTPRB-204ENST00000538708 DDX21Q9NR30 783 aaKnown RBP eCLIP10.83□□□□□ -0.68
PTPRB-204ENST00000538708 CCDC191Q8NCU4 936 aa10.82□□□□□ -0.68
PTPRB-204ENST00000538708 PUS7Q96PZ0 661 aaKnown RBP10.82□□□□□ -0.68
PTPRB-204ENST00000538708 MAP7D2Q96T17 732 aa10.82□□□□□ -0.68
PTPRB-204ENST00000538708 TCOF1Q13428 1488 aaKnown RBP10.82□□□□□ -0.68
PTPRB-204ENST00000538708 AKNAD1Q5T1N1 836 aa10.82□□□□□ -0.68
PTPRB-204ENST00000538708 TBC1D9Q6ZT07 1266 aa10.82□□□□□ -0.68
PTPRB-204ENST00000538708 CPLX3Q8WVH0 158 aa10.82□□□□□ -0.68
PTPRB-204ENST00000538708 AS3MTQ9HBK9 375 aa10.82□□□□□ -0.68
PTPRB-204ENST00000538708 SSX2IPQ9Y2D8 614 aa10.82□□□□□ -0.68
PTPRB-204ENST00000538708 KIF4AO95239 1232 aa10.82□□□□□ -0.68
PTPRB-204ENST00000538708 RBM25P49756 843 aaKnown RBP10.82□□□□□ -0.68
PTPRB-204ENST00000538708 USP48Q86UV5 1035 aa10.82□□□□□ -0.68
PTPRB-204ENST00000538708 RBM8AQ9Y5S9 174 aaKnown RBP10.82□□□□□ -0.68
PTPRB-204ENST00000538708 MYCLP12524 364 aaPredicted RBP10.82□□□□□ -0.68
PTPRB-204ENST00000538708 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.82□□□□□ -0.68
PTPRB-204ENST00000538708 RBM28Q9NW13 759 aaKnown RBP10.82□□□□□ -0.68
PTPRB-204ENST00000538708 SAMD9Q5K651 1589 aa10.82□□□□□ -0.68
PTPRB-204ENST00000538708 ERVV-2B6SEH9 535 aa10.82□□□□□ -0.68
PTPRB-204ENST00000538708 TOP1P11387 765 aaKnown RBP10.82□□□□□ -0.68
PTPRB-204ENST00000538708 GADL1Q6ZQY3 521 aa10.82□□□□□ -0.68
PTPRB-204ENST00000538708 AATFQ9NY61 560 aaKnown RBP eCLIP10.82□□□□□ -0.68
PTPRB-204ENST00000538708 CIZ1Q9ULV3 898 aaPredicted RBP10.82□□□□□ -0.68
PTPRB-204ENST00000538708 DISP1Q96F81 1524 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 CTAGE5O15320 804 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 KRT24Q2M2I5 525 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 HOOK3Q86VS8 718 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 CCDC117Q8IWD4 279 aaPredicted RBP10.81□□□□□ -0.68
PTPRB-204ENST00000538708 TRIM47Q96LD4 638 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 BACH2Q9BYV9 841 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 LGR6Q9HBX8 967 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 SLC5A4Q9NY91 659 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 MRVI1Q9Y6F6 885 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 BMP15O95972 392 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 ARMT1Q9H993 441 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 RBM27Q9P2N5 1060 aaKnown RBP10.81□□□□□ -0.68
PTPRB-204ENST00000538708 MYO5CQ9NQX4 1742 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 BIN1O00499 593 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 USO1O60763 962 aaKnown RBP10.81□□□□□ -0.68
PTPRB-204ENST00000538708 ZKSCAN3Q9BRR0 538 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 PODXL2Q9NZ53 605 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 UGGT1Q9NYU2 1555 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 PTPRKQ15262 1439 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 GSTTP1A0A1W2PQM5 241 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 M0QZ92 97 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 LTKP29376 864 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 AFMP43652 599 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 TAF3Q5VWG9 929 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 RRAGBQ5VZM2 374 aa10.81□□□□□ -0.68
PTPRB-204ENST00000538708 ATF5Q9Y2D1 282 aaPredicted RBP10.81□□□□□ -0.68
PTPRB-204ENST00000538708 ERLIN1O75477 346 aa10.8□□□□□ -0.68
PTPRB-204ENST00000538708 CCDC183Q5T5S1 534 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms