RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 MAGEC3Q8TD91 643 aa14.28□□□□□ -0.12
USP3-203ENST00000538686 SMARCC1Q92922 1105 aaPredicted RBP14.28□□□□□ -0.12
USP3-203ENST00000538686 BAG1Q99933 345 aaPredicted RBP14.28□□□□□ -0.12
USP3-203ENST00000538686 CAPN7Q9Y6W3 813 aa14.28□□□□□ -0.12
USP3-203ENST00000538686 VWA3AA6NCI4 1184 aa14.27□□□□□ -0.12
USP3-203ENST00000538686 TM6SF1Q9BZW5 370 aa14.27□□□□□ -0.12
USP3-203ENST00000538686 CPSF2Q9P2I0 782 aaKnown RBP14.27□□□□□ -0.12
USP3-203ENST00000538686 STAP2Q9UGK3 403 aa14.27□□□□□ -0.12
USP3-203ENST00000538686 CFAP45Q9UL16 551 aa14.27□□□□□ -0.12
USP3-203ENST00000538686 ZBTB12Q9Y330 459 aaPredicted RBP14.27□□□□□ -0.12
USP3-203ENST00000538686 ADAMTS12P58397 1594 aa14.27□□□□□ -0.12
USP3-203ENST00000538686 FANCGO15287 622 aa14.27□□□□□ -0.13
USP3-203ENST00000538686 CBFA2T2O43439 604 aa14.27□□□□□ -0.13
USP3-203ENST00000538686 CHGAP10645 457 aaKnown RBP14.27□□□□□ -0.13
USP3-203ENST00000538686 MCM3P25205 808 aa14.27□□□□□ -0.13
USP3-203ENST00000538686 ARID4AP29374 1257 aaPredicted RBP14.27□□□□□ -0.13
USP3-203ENST00000538686 CCT5P48643 541 aa14.27□□□□□ -0.13
USP3-203ENST00000538686 RCSD1Q6JBY9 416 aa14.27□□□□□ -0.13
USP3-203ENST00000538686 MICALCLQ6ZW33 695 aa14.27□□□□□ -0.13
USP3-203ENST00000538686 BORCS6Q96GS4 357 aa14.27□□□□□ -0.13
USP3-203ENST00000538686 PUS7Q96PZ0 661 aaKnown RBP14.27□□□□□ -0.13
USP3-203ENST00000538686 XPO4Q9C0E2 1151 aaKnown RBP14.27□□□□□ -0.13
USP3-203ENST00000538686 TMX4Q9H1E5 349 aaPredicted RBP14.27□□□□□ -0.13
USP3-203ENST00000538686 ANKZF1Q9H8Y5 726 aa14.27□□□□□ -0.13
USP3-203ENST00000538686 ABCB6Q9NP58 842 aa14.27□□□□□ -0.13
USP3-203ENST00000538686 EZRP15311 586 aaKnown RBP14.26□□□□□ -0.13
USP3-203ENST00000538686 FNTAP49354 379 aa14.26□□□□□ -0.13
USP3-203ENST00000538686 RILPL2Q969X0 211 aa14.26□□□□□ -0.13
USP3-203ENST00000538686 BATF3Q9NR55 127 aa14.26□□□□□ -0.13
USP3-203ENST00000538686 CDC42BPGQ6DT37 1551 aa14.26□□□□□ -0.13
USP3-203ENST00000538686 KINO60870 393 aaKnown RBP14.26□□□□□ -0.13
USP3-203ENST00000538686 CUTAO60888 179 aa14.26□□□□□ -0.13
USP3-203ENST00000538686 CLNS1AP54105 237 aaKnown RBP14.26□□□□□ -0.13
USP3-203ENST00000538686 ISM2Q6H9L7 571 aa14.26□□□□□ -0.13
USP3-203ENST00000538686 CDC37L1Q7L3B6 337 aa14.26□□□□□ -0.13
USP3-203ENST00000538686 YTHDF3Q7Z739 585 aaKnown RBP14.26□□□□□ -0.13
USP3-203ENST00000538686 KIFC2Q96AC6 838 aa14.26□□□□□ -0.13
USP3-203ENST00000538686 PLEKHA4Q9H4M7 779 aa14.26□□□□□ -0.13
USP3-203ENST00000538686 HOMER3Q9NSC5 361 aa14.26□□□□□ -0.13
USP3-203ENST00000538686 PPP2R2CQ9Y2T4 447 aa14.26□□□□□ -0.13
USP3-203ENST00000538686 MAP3K4Q9Y6R4 1608 aa14.25□□□□□ -0.13
USP3-203ENST00000538686 EVC2Q86UK5 1308 aa14.25□□□□□ -0.13
USP3-203ENST00000538686 APBB1O00213 710 aa14.25□□□□□ -0.13
USP3-203ENST00000538686 PRPF6O94906 941 aaKnown RBP14.25□□□□□ -0.13
USP3-203ENST00000538686 PRPHP41219 470 aa14.25□□□□□ -0.13
USP3-203ENST00000538686 TWISTNBQ3B726 338 aaPredicted RBP14.25□□□□□ -0.13
USP3-203ENST00000538686 CCDC73Q6ZRK6 1079 aa14.25□□□□□ -0.13
USP3-203ENST00000538686 TCP11Q8WWU5 503 aa14.25□□□□□ -0.13
USP3-203ENST00000538686 PGBD1Q96JS3 809 aa14.25□□□□□ -0.13
USP3-203ENST00000538686 IFNKQ9P0W0 207 aa14.25□□□□□ -0.13
USP3-203ENST00000538686 CDHR2Q9BYE9 1310 aa14.24□□□□□ -0.13
USP3-203ENST00000538686 SNUPNO95149 360 aaKnown RBP14.24□□□□□ -0.13
USP3-203ENST00000538686 MYBL2P10244 700 aa14.24□□□□□ -0.13
USP3-203ENST00000538686 SMTNP53814 917 aa14.24□□□□□ -0.13
USP3-203ENST00000538686 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.24□□□□□ -0.131e-8■■■□□ 15.2
USP3-203ENST00000538686 MYO1BO43795 1136 aa14.24□□□□□ -0.13
USP3-203ENST00000538686 WDHD1O75717 1129 aaPredicted RBP14.24□□□□□ -0.13
USP3-203ENST00000538686 FCHSD2O94868 740 aa14.24□□□□□ -0.13
USP3-203ENST00000538686 CCNHP51946 323 aaPredicted RBP14.24□□□□□ -0.13
USP3-203ENST00000538686 PPFIA1Q13136 1202 aa14.24□□□□□ -0.13
USP3-203ENST00000538686 CEP85LQ5SZL2 805 aa14.24□□□□□ -0.13
USP3-203ENST00000538686 FAM76AQ8TAV0 307 aa14.24□□□□□ -0.13
USP3-203ENST00000538686 DHX58Q96C10 678 aa14.24□□□□□ -0.13
USP3-203ENST00000538686 ATP6V0A4Q9HBG4 840 aa14.24□□□□□ -0.13
USP3-203ENST00000538686 MYO6Q9UM54 1294 aa14.24□□□□□ -0.13
USP3-203ENST00000538686 CYP46A1Q9Y6A2 500 aa14.24□□□□□ -0.13
USP3-203ENST00000538686 MAGI1Q96QZ7 1491 aaPredicted RBP14.23□□□□□ -0.13
USP3-203ENST00000538686 SAMD9LQ8IVG5 1584 aa14.23□□□□□ -0.13
USP3-203ENST00000538686 GCKP35557 465 aa14.23□□□□□ -0.13
USP3-203ENST00000538686 CDR1P51861 262 aa14.23□□□□□ -0.13
USP3-203ENST00000538686 HNRNPMP52272 730 aaKnown RBP eCLIP14.23□□□□□ -0.133e-6■■□□□ 12.1
USP3-203ENST00000538686 WDR93Q6P2C0 686 aa14.23□□□□□ -0.13
USP3-203ENST00000538686 CCAR1Q8IX12 1150 aaKnown RBP14.23□□□□□ -0.13
USP3-203ENST00000538686 CLIC6Q96NY7 704 aa14.23□□□□□ -0.13
USP3-203ENST00000538686 LRRCC1Q9C099 1032 aa14.23□□□□□ -0.13
USP3-203ENST00000538686 KLC4Q9NSK0 619 aa14.23□□□□□ -0.13
USP3-203ENST00000538686 CDC23Q9UJX2 597 aa14.23□□□□□ -0.13
USP3-203ENST00000538686 PLCH2O75038 1416 aa14.23□□□□□ -0.13
USP3-203ENST00000538686 PHACTR2O75167 634 aa14.22□□□□□ -0.13
USP3-203ENST00000538686 WDR24Q96S15 920 aa14.22□□□□□ -0.13
USP3-203ENST00000538686 PSMD1Q99460 953 aa14.22□□□□□ -0.13
USP3-203ENST00000538686 SETBP1Q9Y6X0 1596 aa14.22□□□□□ -0.13
USP3-203ENST00000538686 EIF3HO15372 352 aaKnown RBP eCLIP14.22□□□□□ -0.13
USP3-203ENST00000538686 COQ9O75208 318 aa14.22□□□□□ -0.13
USP3-203ENST00000538686 LARGE1O95461 756 aa14.22□□□□□ -0.13
USP3-203ENST00000538686 SLC8A1P32418 973 aa14.22□□□□□ -0.13
USP3-203ENST00000538686 IRAK1P51617 712 aa14.22□□□□□ -0.13
USP3-203ENST00000538686 DRP2Q13474 957 aa14.22□□□□□ -0.13
USP3-203ENST00000538686 MAB21L3Q8N8X9 362 aa14.22□□□□□ -0.13
USP3-203ENST00000538686 KCNB2Q92953 911 aa14.22□□□□□ -0.13
USP3-203ENST00000538686 PAGR1Q9BTK6 254 aa14.22□□□□□ -0.13
USP3-203ENST00000538686 CD248Q9HCU0 757 aa14.22□□□□□ -0.13
USP3-203ENST00000538686 MEFVO15553 781 aaPredicted RBP14.21□□□□□ -0.13
USP3-203ENST00000538686 SYF2O95926 243 aaKnown RBP14.21□□□□□ -0.13
USP3-203ENST00000538686 PECAM1P16284 738 aaPredicted RBP14.21□□□□□ -0.13
USP3-203ENST00000538686 PIP4K2BP78356 416 aa14.21□□□□□ -0.13
USP3-203ENST00000538686 ANKRD1Q15327 319 aa14.21□□□□□ -0.13
USP3-203ENST00000538686 ATL3Q6DD88 541 aa14.21□□□□□ -0.13
USP3-203ENST00000538686 BRAPQ7Z569 592 aa14.21□□□□□ -0.13
USP3-203ENST00000538686 FERMT3Q86UX7 667 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms