RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 EMILIN1Q9Y6C2 1016 aa11.27□□□□□ -0.6
COL4A6-208ENST00000538570 IFIT1BQ5T764 474 aaKnown RBP11.27□□□□□ -0.61
COL4A6-208ENST00000538570 TSHZ3Q63HK5 1081 aa11.27□□□□□ -0.61
COL4A6-208ENST00000538570 UTP14AQ9BVJ6 771 aaKnown RBP11.27□□□□□ -0.61
COL4A6-208ENST00000538570 CNNM2Q9H8M5 875 aa11.27□□□□□ -0.61
COL4A6-208ENST00000538570 PHACTR2O75167 634 aa11.27□□□□□ -0.61
COL4A6-208ENST00000538570 PTGS1P23219 599 aa11.27□□□□□ -0.61
COL4A6-208ENST00000538570 ARL1P40616 181 aaPredicted RBP11.27□□□□□ -0.61
COL4A6-208ENST00000538570 MRPS9P82933 396 aaKnown RBP11.27□□□□□ -0.61
COL4A6-208ENST00000538570 RTN1Q16799 776 aa11.27□□□□□ -0.61
COL4A6-208ENST00000538570 ANAPC4Q9UJX5 808 aa11.27□□□□□ -0.61
COL4A6-208ENST00000538570 GCKP35557 465 aa11.27□□□□□ -0.61
COL4A6-208ENST00000538570 CCDC63Q8NA47 563 aa11.27□□□□□ -0.61
COL4A6-208ENST00000538570 GTF3C6Q969F1 213 aa11.27□□□□□ -0.61
COL4A6-208ENST00000538570 KRT86O43790 486 aa11.26□□□□□ -0.61
COL4A6-208ENST00000538570 ZFYP08048 801 aaPredicted RBP11.26□□□□□ -0.61
COL4A6-208ENST00000538570 NUCB1Q02818 461 aa11.26□□□□□ -0.61
COL4A6-208ENST00000538570 SLC4A8Q2Y0W8 1093 aa11.26□□□□□ -0.61
COL4A6-208ENST00000538570 HSP90AA4PQ58FG1 418 aa11.26□□□□□ -0.61
COL4A6-208ENST00000538570 TSPY3P0CV98 308 aa11.26□□□□□ -0.61
COL4A6-208ENST00000538570 TSPY8P0CW00 308 aa11.26□□□□□ -0.61
COL4A6-208ENST00000538570 KIF5AQ12840 1032 aa11.26□□□□□ -0.61
COL4A6-208ENST00000538570 DDX46Q7L014 1031 aaKnown RBP11.26□□□□□ -0.61
COL4A6-208ENST00000538570 TTC21BQ7Z4L5 1316 aa11.26□□□□□ -0.61
COL4A6-208ENST00000538570 TRAF1Q13077 416 aa11.26□□□□□ -0.61
COL4A6-208ENST00000538570 ZNF354CQ86Y25 554 aa11.26□□□□□ -0.61
COL4A6-208ENST00000538570 ASIC1P78348 528 aa11.26□□□□□ -0.61
COL4A6-208ENST00000538570 DNAJC25Q9H1X3 360 aa11.26□□□□□ -0.61
COL4A6-208ENST00000538570 RTL1A6NKG5 1358 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 ATP6V1AP38606 617 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 MAP7D1Q3KQU3 841 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 UBE3BQ7Z3V4 1068 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 ESR2Q92731 530 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 ATP5J2-PTCD1G3V325 749 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 NDC80O14777 642 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 IGHDP01880 384 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 HEATR3Q7Z4Q2 680 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 TTC16Q8NEE8 873 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 STX8Q9UNK0 236 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 TMEM110-MUSTN1A8MSY1 372 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 RHPN1Q8TCX5 695 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 DACT1Q9NYF0 836 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 NSD2O96028 1365 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 SDSP20132 328 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 GNAQP50148 359 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 ADGRL1O94910 1474 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 F13A1P00488 732 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 PSMC4P43686 418 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 GABPB1Q06547 395 aaPredicted RBP11.25□□□□□ -0.61
COL4A6-208ENST00000538570 MBIPQ9NS73 344 aa11.25□□□□□ -0.61
COL4A6-208ENST00000538570 IL16Q14005 1332 aa11.24□□□□□ -0.61
COL4A6-208ENST00000538570 PI4KAP2A4QPH2 592 aa11.24□□□□□ -0.61
COL4A6-208ENST00000538570 NOL3O60936 208 aaKnown RBP11.24□□□□□ -0.61
COL4A6-208ENST00000538570 PI4KAP1Q8N8J0 262 aa11.24□□□□□ -0.61
COL4A6-208ENST00000538570 ANKRD24Q8TF21 1146 aa11.24□□□□□ -0.61
COL4A6-208ENST00000538570 ZNF219Q9P2Y4 722 aaPredicted RBP11.24□□□□□ -0.61
COL4A6-208ENST00000538570 EEF2P13639 858 aaKnown RBP11.24□□□□□ -0.61
COL4A6-208ENST00000538570 HDAC1Q13547 482 aaPredicted RBP11.24□□□□□ -0.61
COL4A6-208ENST00000538570 Q6ZUG5 572 aa11.24□□□□□ -0.61
COL4A6-208ENST00000538570 RBM8AQ9Y5S9 174 aaKnown RBP11.24□□□□□ -0.61
COL4A6-208ENST00000538570 GJC1P36383 396 aa11.24□□□□□ -0.61
COL4A6-208ENST00000538570 IMPG2Q9BZV3 1241 aa11.24□□□□□ -0.61
COL4A6-208ENST00000538570 BICDL2A1A5D9 508 aa11.24□□□□□ -0.61
COL4A6-208ENST00000538570 MARCKSP29966 332 aaPredicted RBP11.24□□□□□ -0.61
COL4A6-208ENST00000538570 CCDC50Q8IVM0 306 aa11.24□□□□□ -0.61
COL4A6-208ENST00000538570 SLC4A4Q9Y6R1 1079 aa11.24□□□□□ -0.61
COL4A6-208ENST00000538570 DHX58Q96C10 678 aa11.24□□□□□ -0.61
COL4A6-208ENST00000538570 CAPZA3Q96KX2 299 aa11.24□□□□□ -0.61
COL4A6-208ENST00000538570 CCDC42Q96M95 316 aa11.24□□□□□ -0.61
COL4A6-208ENST00000538570 FEZ2Q9UHY8 353 aaPredicted RBP11.24□□□□□ -0.61
COL4A6-208ENST00000538570 FAM135AQ9P2D6 1515 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 U2AF2P26368 475 aaKnown RBP eCLIP11.23□□□□□ -0.61
COL4A6-208ENST00000538570 MCMDC2Q4G0Z9 681 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 CPLX4Q7Z7G2 160 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 ZBTB9Q96C00 473 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 MRFAP1L1Q96HT8 127 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 ESYT1Q9BSJ8 1104 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 LRRC2Q9BYS8 371 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 KIF14Q15058 1648 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 ARID5AQ03989 594 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 NEK11Q8NG66 645 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 ZWINTO95229 277 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 CCDC152Q4G0S7 254 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 IFNL2Q8IZJ0 200 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 ARFGAP2Q8N6H7 521 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 CYP7A1P22680 504 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 NCOA1Q15788 1441 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 CEP128Q6ZU80 1094 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 RPUSD2Q8IZ73 545 aaKnown RBP11.23□□□□□ -0.61
COL4A6-208ENST00000538570 FAM114A2Q9NRY5 505 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 PHF8Q9UPP1 1060 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 PTPN23Q9H3S7 1636 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 RBBP5Q15291 538 aaKnown RBP11.23□□□□□ -0.61
COL4A6-208ENST00000538570 CEP120Q8N960 986 aa11.23□□□□□ -0.61
COL4A6-208ENST00000538570 ATP2A2P16615 1042 aaKnown RBP11.22□□□□□ -0.61
COL4A6-208ENST00000538570 NAPAP54920 295 aa11.22□□□□□ -0.61
COL4A6-208ENST00000538570 TPD52P55327 224 aaPredicted RBP11.22□□□□□ -0.61
COL4A6-208ENST00000538570 UBXN1Q04323 297 aa11.22□□□□□ -0.61
COL4A6-208ENST00000538570 DNM1Q05193 864 aaKnown RBP11.22□□□□□ -0.61
COL4A6-208ENST00000538570 TYRO3Q06418 890 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms