RNA–Protein interactions for RNA: ENST00000537380.1

CIITA-203, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 1,062 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-203ENST00000537380 SEC31BQ9NQW1 1179 aa11.46□□□□□ -0.57
CIITA-203ENST00000537380 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.46□□□□□ -0.57
CIITA-203ENST00000537380 ARAP2Q8WZ64 1704 aa11.46□□□□□ -0.58
CIITA-203ENST00000537380 LTBP3Q9NS15 1303 aa11.45□□□□□ -0.58
CIITA-203ENST00000537380 NFKBIEO00221 500 aa11.45□□□□□ -0.58
CIITA-203ENST00000537380 IGSF3O75054 1194 aa11.45□□□□□ -0.58
CIITA-203ENST00000537380 TBC1D9Q6ZT07 1266 aa11.45□□□□□ -0.58
CIITA-203ENST00000537380 RBM17Q96I25 401 aaKnown RBP11.45□□□□□ -0.58
CIITA-203ENST00000537380 HAUS7Q99871 368 aa11.45□□□□□ -0.58
CIITA-203ENST00000537380 CCDC8Q9H0W5 538 aaPredicted RBP11.45□□□□□ -0.58
CIITA-203ENST00000537380 UPF2Q9HAU5 1272 aaKnown RBP11.45□□□□□ -0.58
CIITA-203ENST00000537380 LRRC37AA6NMS7 1700 aa11.45□□□□□ -0.58
CIITA-203ENST00000537380 TIAM2Q8IVF5 1701 aa11.45□□□□□ -0.58
CIITA-203ENST00000537380 IFIT1P09914 478 aaKnown RBP11.44□□□□□ -0.58
CIITA-203ENST00000537380 UQCRFS1P1P0C7P4 283 aa11.44□□□□□ -0.58
CIITA-203ENST00000537380 SLC5A1P13866 664 aa11.44□□□□□ -0.58
CIITA-203ENST00000537380 ALDH1B1P30837 517 aa11.44□□□□□ -0.58
CIITA-203ENST00000537380 TIMM10P62072 90 aa11.44□□□□□ -0.58
CIITA-203ENST00000537380 CCDC158Q5M9N0 1113 aa11.44□□□□□ -0.58
CIITA-203ENST00000537380 SOGA3Q5TF21 947 aa11.44□□□□□ -0.58
CIITA-203ENST00000537380 CCDC85AQ96PX6 553 aaPredicted RBP11.44□□□□□ -0.58
CIITA-203ENST00000537380 DBNDD2Q9BQY9 259 aa11.44□□□□□ -0.58
CIITA-203ENST00000537380 MINPP1Q9UNW1 487 aa11.44□□□□□ -0.58
CIITA-203ENST00000537380 TAF1P21675 1872 aa11.43□□□□□ -0.58
CIITA-203ENST00000537380 C21orf2O43822 256 aa11.43□□□□□ -0.58
CIITA-203ENST00000537380 ARID4AP29374 1257 aaPredicted RBP11.43□□□□□ -0.58
CIITA-203ENST00000537380 CHRNDQ07001 517 aa11.43□□□□□ -0.58
CIITA-203ENST00000537380 LRRFIP1Q32MZ4 808 aaKnown RBP11.43□□□□□ -0.58
CIITA-203ENST00000537380 C9orf131Q5VYM1 1079 aa11.43□□□□□ -0.58
CIITA-203ENST00000537380 C15orf52Q6ZUT6 534 aaKnown RBP11.43□□□□□ -0.58
CIITA-203ENST00000537380 IL27Q8NEV9 243 aa11.43□□□□□ -0.58
CIITA-203ENST00000537380 RPGRQ92834 1020 aaKnown RBP11.43□□□□□ -0.58
CIITA-203ENST00000537380 XAGE2Q96GT9 111 aa11.43□□□□□ -0.58
CIITA-203ENST00000537380 TLR7Q9NYK1 1049 aaKnown RBP11.43□□□□□ -0.58
CIITA-203ENST00000537380 RBM19Q9Y4C8 960 aaKnown RBP11.43□□□□□ -0.58
CIITA-203ENST00000537380 PDS5AQ29RF7 1337 aaKnown RBP11.42□□□□□ -0.58
CIITA-203ENST00000537380 A0A1B0GUL6 1792 aa11.42□□□□□ -0.58
CIITA-203ENST00000537380 REC8O95072 547 aa11.42□□□□□ -0.58
CIITA-203ENST00000537380 CHMLP26374 656 aa11.42□□□□□ -0.58
CIITA-203ENST00000537380 PRELPP51888 382 aa11.42□□□□□ -0.58
CIITA-203ENST00000537380 RASSF7Q02833 373 aa11.42□□□□□ -0.58
CIITA-203ENST00000537380 TMED8Q6PL24 325 aaPredicted RBP11.42□□□□□ -0.58
CIITA-203ENST00000537380 RUFY2Q8WXA3 655 aa11.42□□□□□ -0.58
CIITA-203ENST00000537380 CELF1Q92879 486 aaKnown RBP11.42□□□□□ -0.58
CIITA-203ENST00000537380 NEUROD6Q96NK8 337 aa11.42□□□□□ -0.58
CIITA-203ENST00000537380 SNRKQ9NRH2 765 aa11.42□□□□□ -0.58
CIITA-203ENST00000537380 PODXL2Q9NZ53 605 aa11.42□□□□□ -0.58
CIITA-203ENST00000537380 RNF181Q9P0P0 153 aa11.42□□□□□ -0.58
CIITA-203ENST00000537380 LEMD3Q9Y2U8 911 aa11.42□□□□□ -0.58
CIITA-203ENST00000537380 AK9Q5TCS8 1911 aa11.42□□□□□ -0.58
CIITA-203ENST00000537380 COL4A1P02462 1669 aa11.42□□□□□ -0.58
CIITA-203ENST00000537380 ZNF804BA4D1E1 1349 aa11.41□□□□□ -0.58
CIITA-203ENST00000537380 ZC3H4Q9UPT8 1303 aaKnown RBP11.41□□□□□ -0.58
CIITA-203ENST00000537380 TRIM6-TRIM34B2RNG4 842 aa11.41□□□□□ -0.58
CIITA-203ENST00000537380 SEMA3EO15041 775 aa11.41□□□□□ -0.58
CIITA-203ENST00000537380 TOMM70O94826 608 aa11.41□□□□□ -0.58
CIITA-203ENST00000537380 HSPA6P17066 643 aa11.41□□□□□ -0.58
CIITA-203ENST00000537380 LMNB1P20700 586 aa11.41□□□□□ -0.58
CIITA-203ENST00000537380 CCDC93Q567U6 631 aa11.41□□□□□ -0.58
CIITA-203ENST00000537380 GORABQ5T7V8 394 aa11.41□□□□□ -0.58
CIITA-203ENST00000537380 TSHZ3Q63HK5 1081 aa11.41□□□□□ -0.58
CIITA-203ENST00000537380 LTBP1Q14766 1721 aa11.4□□□□□ -0.58
CIITA-203ENST00000537380 RAD50Q92878 1312 aa11.4□□□□□ -0.58
CIITA-203ENST00000537380 RBM25P49756 843 aaKnown RBP11.4□□□□□ -0.58
CIITA-203ENST00000537380 TTF1Q15361 905 aaPredicted RBP11.4□□□□□ -0.58
CIITA-203ENST00000537380 GRIPAP1Q4V328 841 aa11.4□□□□□ -0.58
CIITA-203ENST00000537380 TTC39AQ5SRH9 613 aa11.4□□□□□ -0.58
CIITA-203ENST00000537380 CC2D2BQ6DHV5 1058 aa11.4□□□□□ -0.58
CIITA-203ENST00000537380 SP8Q8IXZ3 490 aa11.4□□□□□ -0.58
CIITA-203ENST00000537380 KBTBD3Q8NAB2 608 aa11.4□□□□□ -0.58
CIITA-203ENST00000537380 RILPL2Q969X0 211 aa11.4□□□□□ -0.58
CIITA-203ENST00000537380 TBC1D32Q96NH3 1257 aa11.4□□□□□ -0.58
CIITA-203ENST00000537380 BOLA2Q9H3K6 86 aa11.4□□□□□ -0.58
CIITA-203ENST00000537380 XDHP47989 1333 aa11.39□□□□□ -0.59
CIITA-203ENST00000537380 PPEF1O14829 653 aaPredicted RBP11.39□□□□□ -0.59
CIITA-203ENST00000537380 ZFYP08048 801 aaPredicted RBP11.39□□□□□ -0.59
CIITA-203ENST00000537380 FKBP4Q02790 459 aaKnown RBP eCLIP11.39□□□□□ -0.59
CIITA-203ENST00000537380 CCDC102BQ68D86 513 aa11.39□□□□□ -0.59
CIITA-203ENST00000537380 OLFM4Q6UX06 510 aa11.39□□□□□ -0.59
CIITA-203ENST00000537380 FBXO33Q7Z6M2 555 aa11.39□□□□□ -0.59
CIITA-203ENST00000537380 RTKN2Q8IZC4 609 aa11.39□□□□□ -0.59
CIITA-203ENST00000537380 ESYT1Q9BSJ8 1104 aa11.39□□□□□ -0.59
CIITA-203ENST00000537380 TAOK3Q9H2K8 898 aa11.39□□□□□ -0.59
CIITA-203ENST00000537380 GNL3LQ9NVN8 582 aaKnown RBP11.39□□□□□ -0.59
CIITA-203ENST00000537380 PAG1Q9NWQ8 432 aa11.39□□□□□ -0.59
CIITA-203ENST00000537380 ZNF219Q9P2Y4 722 aaPredicted RBP11.39□□□□□ -0.59
CIITA-203ENST00000537380 AKAP11Q9UKA4 1901 aa11.39□□□□□ -0.59
CIITA-203ENST00000537380 IRS2Q9Y4H2 1338 aa11.38□□□□□ -0.59
CIITA-203ENST00000537380 DUOX1Q9NRD9 1551 aa11.38□□□□□ -0.59
CIITA-203ENST00000537380 SGSM2O43147 1006 aa11.38□□□□□ -0.59
CIITA-203ENST00000537380 SEC24BO95487 1268 aa11.38□□□□□ -0.59
CIITA-203ENST00000537380 ATP2B4P23634 1241 aa11.38□□□□□ -0.59
CIITA-203ENST00000537380 ADORA1P30542 326 aa11.38□□□□□ -0.59
CIITA-203ENST00000537380 APLP1P51693 650 aa11.38□□□□□ -0.59
CIITA-203ENST00000537380 CAVIN4Q5BKX8 364 aa11.38□□□□□ -0.59
CIITA-203ENST00000537380 DPY19L2Q6NUT2 758 aa11.38□□□□□ -0.59
CIITA-203ENST00000537380 IL17RAQ96F46 866 aa11.38□□□□□ -0.59
CIITA-203ENST00000537380 PSMD1Q99460 953 aa11.38□□□□□ -0.59
CIITA-203ENST00000537380 ATP6V0A2Q9Y487 856 aa11.38□□□□□ -0.59
CIITA-203ENST00000537380 KIF3CO14782 793 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms