RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 A0A0D9SFI3 127 aa16.35■□□□□ 0.21
LIG1-203ENST00000536218 EXOC5O00471 708 aa16.35■□□□□ 0.21
LIG1-203ENST00000536218 BRD2P25440 801 aaKnown RBP16.35■□□□□ 0.21
LIG1-203ENST00000536218 MCM2P49736 904 aa16.35■□□□□ 0.21
LIG1-203ENST00000536218 FAM89AQ96GI7 184 aa16.35■□□□□ 0.21
LIG1-203ENST00000536218 GEMIN8Q9NWZ8 242 aaKnown RBP16.35■□□□□ 0.21
LIG1-203ENST00000536218 ABCC6O95255 1503 aa16.35■□□□□ 0.21
LIG1-203ENST00000536218 ADCK5Q3MIX3 580 aa16.35■□□□□ 0.21
LIG1-203ENST00000536218 CCDC191Q8NCU4 936 aa16.35■□□□□ 0.21
LIG1-203ENST00000536218 JAKMIP1Q96N16 626 aaKnown RBP16.35■□□□□ 0.21
LIG1-203ENST00000536218 USP27XA6NNY8 438 aa16.34■□□□□ 0.21
LIG1-203ENST00000536218 CUL4AQ13619 759 aa16.34■□□□□ 0.21
LIG1-203ENST00000536218 LRRC24Q50LG9 513 aa16.34■□□□□ 0.21
LIG1-203ENST00000536218 LCMT1Q9UIC8 334 aa16.34■□□□□ 0.21
LIG1-203ENST00000536218 CREBRFQ8IUR6 639 aa16.34■□□□□ 0.21
LIG1-203ENST00000536218 SYNE4Q8N205 404 aa16.34■□□□□ 0.21
LIG1-203ENST00000536218 CACTINQ8WUQ7 758 aaKnown RBP16.34■□□□□ 0.21
LIG1-203ENST00000536218 ERO1AQ96HE7 468 aa16.34■□□□□ 0.21
LIG1-203ENST00000536218 FUCA2Q9BTY2 467 aa16.34■□□□□ 0.21
LIG1-203ENST00000536218 MYO1CO00159 1063 aa16.34■□□□□ 0.21
LIG1-203ENST00000536218 NOP2P46087 812 aaKnown RBP16.34■□□□□ 0.21
LIG1-203ENST00000536218 DDX46Q7L014 1031 aaKnown RBP16.34■□□□□ 0.21
LIG1-203ENST00000536218 FAM53CQ9NYF3 392 aa16.34■□□□□ 0.21
LIG1-203ENST00000536218 AK2P54819 239 aa16.33■□□□□ 0.21
LIG1-203ENST00000536218 ERCC6LQ2NKX8 1250 aa16.33■□□□□ 0.21
LIG1-203ENST00000536218 PUS3Q9BZE2 481 aaKnown RBP16.33■□□□□ 0.21
LIG1-203ENST00000536218 YY1AP1Q9H869 796 aa16.33■□□□□ 0.21
LIG1-203ENST00000536218 RBM8AQ9Y5S9 174 aaKnown RBP16.33■□□□□ 0.21
LIG1-203ENST00000536218 TUBGCP6Q96RT7 1819 aa16.33■□□□□ 0.2
LIG1-203ENST00000536218 STARD3NLO95772 234 aa16.33■□□□□ 0.2
LIG1-203ENST00000536218 PRR29P0C7W0 189 aa16.33■□□□□ 0.2
LIG1-203ENST00000536218 PIP4K2BP78356 416 aa16.33■□□□□ 0.2
LIG1-203ENST00000536218 CKAP2LQ8IYA6 745 aa16.33■□□□□ 0.2
LIG1-203ENST00000536218 FAM200AQ8TCP9 573 aa16.33■□□□□ 0.2
LIG1-203ENST00000536218 FAM193AP78312 1265 aa16.32■□□□□ 0.2
LIG1-203ENST00000536218 KIF6Q6ZMV9 814 aa16.32■□□□□ 0.2
LIG1-203ENST00000536218 INTS4Q96HW7 963 aaKnown RBP16.32■□□□□ 0.2
LIG1-203ENST00000536218 TCEANC2Q96MN5 208 aa16.32■□□□□ 0.2
LIG1-203ENST00000536218 RNF216Q9NWF9 866 aaPredicted RBP16.32■□□□□ 0.2
LIG1-203ENST00000536218 CLIP2Q9UDT6 1046 aa16.32■□□□□ 0.2
LIG1-203ENST00000536218 SLU7O95391 586 aaKnown RBP16.32■□□□□ 0.2
LIG1-203ENST00000536218 ACSBG1Q96GR2 724 aa16.32■□□□□ 0.2
LIG1-203ENST00000536218 CCDC171Q6TFL3 1326 aa16.32■□□□□ 0.2
LIG1-203ENST00000536218 SLFNL1Q499Z3 407 aa16.32■□□□□ 0.2
LIG1-203ENST00000536218 ZNF589Q86UQ0 364 aaPredicted RBP16.32■□□□□ 0.2
LIG1-203ENST00000536218 PLEKHG2Q9H7P9 1386 aa16.31■□□□□ 0.2
LIG1-203ENST00000536218 CASQ1P31415 396 aa16.31■□□□□ 0.2
LIG1-203ENST00000536218 ST5P78524 1137 aa16.31■□□□□ 0.2
LIG1-203ENST00000536218 TCIRG1Q13488 830 aa16.31■□□□□ 0.2
LIG1-203ENST00000536218 TXLNBQ8N3L3 684 aa16.31■□□□□ 0.2
LIG1-203ENST00000536218 SEC62Q99442 399 aaKnown RBP16.31■□□□□ 0.2
LIG1-203ENST00000536218 COL9A3Q14050 684 aaPredicted RBP16.31■□□□□ 0.2
LIG1-203ENST00000536218 ARID5BQ14865 1188 aa16.31■□□□□ 0.2
LIG1-203ENST00000536218 HLFQ16534 295 aa16.31■□□□□ 0.2
LIG1-203ENST00000536218 CCDC129Q6ZRS4 1044 aa16.31■□□□□ 0.2
LIG1-203ENST00000536218 PARP4Q9UKK3 1724 aaKnown RBP16.31■□□□□ 0.2
LIG1-203ENST00000536218 ZKSCAN1P17029 563 aaPredicted RBP16.3■□□□□ 0.2
LIG1-203ENST00000536218 ICE2Q659A1 982 aa16.3■□□□□ 0.2
LIG1-203ENST00000536218 ATG9AQ7Z3C6 839 aa16.3■□□□□ 0.2
LIG1-203ENST00000536218 TBC1D2BQ9UPU7 963 aa16.3■□□□□ 0.2
LIG1-203ENST00000536218 KCPQ6ZWJ8 1503 aa16.3■□□□□ 0.2
LIG1-203ENST00000536218 ZSCAN22P10073 491 aaPredicted RBP16.3■□□□□ 0.2
LIG1-203ENST00000536218 ATP5JP18859 108 aa16.3■□□□□ 0.2
LIG1-203ENST00000536218 ZSCAN26Q16670 478 aa16.3■□□□□ 0.2
LIG1-203ENST00000536218 EP400NLQ6ZTU2 488 aa16.3■□□□□ 0.2
LIG1-203ENST00000536218 SLC4A9Q96Q91 983 aa16.3■□□□□ 0.2
LIG1-203ENST00000536218 ZCCHC17Q9NP64 241 aaKnown RBP16.3■□□□□ 0.2
LIG1-203ENST00000536218 FHOD1Q9Y613 1164 aa16.3■□□□□ 0.2
LIG1-203ENST00000536218 HIP1O00291 1037 aa16.3■□□□□ 0.2
LIG1-203ENST00000536218 PNMA6AP0CW24 399 aaPredicted RBP16.3■□□□□ 0.2
LIG1-203ENST00000536218 CCDC57Q2TAC2 916 aa16.3■□□□□ 0.2
LIG1-203ENST00000536218 CREB3L3Q68CJ9 461 aa16.3■□□□□ 0.2
LIG1-203ENST00000536218 RUFY3Q7L099 469 aa16.3■□□□□ 0.2
LIG1-203ENST00000536218 DRC1Q96MC2 740 aa16.3■□□□□ 0.2
LIG1-203ENST00000536218 TAF6LQ9Y6J9 622 aa16.3■□□□□ 0.2
LIG1-203ENST00000536218 CLCN6P51797 869 aa16.29■□□□□ 0.2
LIG1-203ENST00000536218 ZNF75DP51815 510 aa16.29■□□□□ 0.2
LIG1-203ENST00000536218 DNM1Q05193 864 aaKnown RBP16.29■□□□□ 0.2
LIG1-203ENST00000536218 CCDC144BQ3MJ40 725 aa16.29■□□□□ 0.2
LIG1-203ENST00000536218 GORABQ5T7V8 394 aa16.29■□□□□ 0.2
LIG1-203ENST00000536218 CCDC144CPQ8IYA2 1237 aa16.29■□□□□ 0.2
LIG1-203ENST00000536218 SMARCE1Q969G3 411 aa16.29■□□□□ 0.2
LIG1-203ENST00000536218 PDRG1Q9NUG6 133 aa16.29■□□□□ 0.2
LIG1-203ENST00000536218 ZBTB1Q9Y2K1 713 aa16.29■□□□□ 0.2
LIG1-203ENST00000536218 GOLIM4O00461 696 aa16.29■□□□□ 0.2
LIG1-203ENST00000536218 PLA2G4AP47712 749 aa16.29■□□□□ 0.2
LIG1-203ENST00000536218 TYRO3Q06418 890 aa16.29■□□□□ 0.2
LIG1-203ENST00000536218 ANO6Q4KMQ2 910 aa16.29■□□□□ 0.2
LIG1-203ENST00000536218 TMEM87AQ8NBN3 555 aa16.29■□□□□ 0.2
LIG1-203ENST00000536218 AFDNP55196 1824 aaKnown RBP16.29■□□□□ 0.2
LIG1-203ENST00000536218 PSEN1P49768 467 aa16.28■□□□□ 0.2
LIG1-203ENST00000536218 TPM4P67936 248 aa16.28■□□□□ 0.2
LIG1-203ENST00000536218 NECTIN1Q15223 517 aa16.28■□□□□ 0.2
LIG1-203ENST00000536218 TEX13AQ9BXU3 409 aaPredicted RBP16.28■□□□□ 0.2
LIG1-203ENST00000536218 CBX8Q9HC52 389 aa16.28■□□□□ 0.2
LIG1-203ENST00000536218 CYP46A1Q9Y6A2 500 aa16.28■□□□□ 0.2
LIG1-203ENST00000536218 EYA2O00167 538 aa16.28■□□□□ 0.2
LIG1-203ENST00000536218 EPB41L2O43491 1005 aaKnown RBP16.28■□□□□ 0.2
LIG1-203ENST00000536218 LARGE1O95461 756 aa16.28■□□□□ 0.2
LIG1-203ENST00000536218 TTC14Q96N46 770 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms