RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 PGAP2Q9UHJ9 254 aa6.41□□□□□ -1.38
USH1C-210ENST00000534556 SCAF8Q9UPN6 1271 aaKnown RBP6.41□□□□□ -1.38
USH1C-210ENST00000534556 CHMP3Q9Y3E7 222 aa6.41□□□□□ -1.38
USH1C-210ENST00000534556 PCDHAC2Q9Y5I4 1007 aa6.41□□□□□ -1.38
USH1C-210ENST00000534556 ZNF804BA4D1E1 1349 aa6.41□□□□□ -1.38
USH1C-210ENST00000534556 ZBED9Q6R2W3 1325 aa6.41□□□□□ -1.38
USH1C-210ENST00000534556 LAMB1P07942 1786 aa6.41□□□□□ -1.38
USH1C-210ENST00000534556 PAPPA2Q9BXP8 1791 aa6.41□□□□□ -1.38
USH1C-210ENST00000534556 IQCA1LA6NCM1 817 aa6.4□□□□□ -1.38
USH1C-210ENST00000534556 PLIN1O60240 522 aa6.4□□□□□ -1.38
USH1C-210ENST00000534556 HSP90B1P14625 803 aaKnown RBP6.4□□□□□ -1.38
USH1C-210ENST00000534556 IGHMBP2P38935 993 aaKnown RBP6.4□□□□□ -1.38
USH1C-210ENST00000534556 PTPN12Q05209 780 aaKnown RBP6.4□□□□□ -1.38
USH1C-210ENST00000534556 IFIT5Q13325 482 aaKnown RBP6.4□□□□□ -1.38
USH1C-210ENST00000534556 GRIK5Q16478 980 aa6.4□□□□□ -1.38
USH1C-210ENST00000534556 TBC1D10BQ4KMP7 808 aaPredicted RBP6.4□□□□□ -1.38
USH1C-210ENST00000534556 INTS3Q68E01 1043 aaKnown RBP6.4□□□□□ -1.38
USH1C-210ENST00000534556 RSBN1LQ6PCB5 846 aaPredicted RBP6.4□□□□□ -1.38
USH1C-210ENST00000534556 ATG9AQ7Z3C6 839 aa6.4□□□□□ -1.38
USH1C-210ENST00000534556 MICALL2Q8IY33 904 aa6.4□□□□□ -1.38
USH1C-210ENST00000534556 CERS5Q8N5B7 392 aa6.4□□□□□ -1.38
USH1C-210ENST00000534556 CLUAP1Q96AJ1 413 aa6.4□□□□□ -1.38
USH1C-210ENST00000534556 EYA3Q99504 573 aa6.4□□□□□ -1.38
USH1C-210ENST00000534556 GLIS2Q9BZE0 524 aaPredicted RBP6.4□□□□□ -1.38
USH1C-210ENST00000534556 ADARB2Q9NS39 739 aaKnown RBP6.4□□□□□ -1.38
USH1C-210ENST00000534556 PA2G4Q9UQ80 394 aaKnown RBP6.4□□□□□ -1.38
USH1C-210ENST00000534556 LEMD3Q9Y2U8 911 aa6.4□□□□□ -1.38
USH1C-210ENST00000534556 AK9Q5TCS8 1911 aa6.4□□□□□ -1.39
USH1C-210ENST00000534556 CASP8AP2Q9UKL3 1982 aa6.4□□□□□ -1.39
USH1C-210ENST00000534556 COL1A1P02452 1464 aaPredicted RBP6.4□□□□□ -1.39
USH1C-210ENST00000534556 ZNF280AP59817 542 aaPredicted RBP6.39□□□□□ -1.39
USH1C-210ENST00000534556 TNIP1Q15025 636 aa6.39□□□□□ -1.39
USH1C-210ENST00000534556 LDHAL6AQ6ZMR3 332 aa6.39□□□□□ -1.39
USH1C-210ENST00000534556 C15orf52Q6ZUT6 534 aaKnown RBP6.39□□□□□ -1.39
USH1C-210ENST00000534556 USP50Q70EL3 339 aaPredicted RBP6.39□□□□□ -1.39
USH1C-210ENST00000534556 TMEM57Q8N5G2 664 aa6.39□□□□□ -1.39
USH1C-210ENST00000534556 DPF2Q92785 391 aa6.39□□□□□ -1.39
USH1C-210ENST00000534556 KLRG1Q96E93 195 aa6.39□□□□□ -1.39
USH1C-210ENST00000534556 FAM84BQ96KN1 310 aaPredicted RBP6.39□□□□□ -1.39
USH1C-210ENST00000534556 MPHOSPH8Q99549 860 aa6.39□□□□□ -1.39
USH1C-210ENST00000534556 TMX4Q9H1E5 349 aaPredicted RBP6.39□□□□□ -1.39
USH1C-210ENST00000534556 CD209Q9NNX6 404 aa6.39□□□□□ -1.39
USH1C-210ENST00000534556 JAG2Q9Y219 1238 aa6.39□□□□□ -1.39
USH1C-210ENST00000534556 CLEC11AQ9Y240 323 aa6.39□□□□□ -1.39
USH1C-210ENST00000534556 LRRFIP2Q9Y608 721 aaKnown RBP6.39□□□□□ -1.39
USH1C-210ENST00000534556 USP17L3A6NCW0 530 aa6.38□□□□□ -1.39
USH1C-210ENST00000534556 USP17L4A6NCW7 530 aa6.38□□□□□ -1.39
USH1C-210ENST00000534556 ADM5C9JUS6 153 aa6.38□□□□□ -1.39
USH1C-210ENST00000534556 IL1R1P14778 569 aa6.38□□□□□ -1.39
USH1C-210ENST00000534556 FGFR2P21802 821 aa6.38□□□□□ -1.39
USH1C-210ENST00000534556 LMOD1P29536 600 aaPredicted RBP6.38□□□□□ -1.39
USH1C-210ENST00000534556 GYG1P46976 350 aa6.38□□□□□ -1.39
USH1C-210ENST00000534556 GTF2IP78347 998 aa6.38□□□□□ -1.39
USH1C-210ENST00000534556 CCDC57Q2TAC2 916 aa6.38□□□□□ -1.39
USH1C-210ENST00000534556 NBPF9Q3BBW0 867 aa6.38□□□□□ -1.39
USH1C-210ENST00000534556 RBM26Q5T8P6 1007 aaKnown RBP6.38□□□□□ -1.39
USH1C-210ENST00000534556 ATF7IPQ6VMQ6 1270 aa6.38□□□□□ -1.39
USH1C-210ENST00000534556 USP17L1Q7RTZ2 530 aa6.38□□□□□ -1.39
USH1C-210ENST00000534556 PODNQ7Z5L7 613 aa6.38□□□□□ -1.39
USH1C-210ENST00000534556 PNMA8AQ86V59 439 aaPredicted RBP6.38□□□□□ -1.39
USH1C-210ENST00000534556 JMYQ8N9B5 988 aa6.38□□□□□ -1.39
USH1C-210ENST00000534556 ARHGAP45Q92619 1136 aa6.38□□□□□ -1.39
USH1C-210ENST00000534556 FRAT1Q92837 279 aaPredicted RBP6.38□□□□□ -1.39
USH1C-210ENST00000534556 ZBED3Q96IU2 234 aaPredicted RBP6.38□□□□□ -1.39
USH1C-210ENST00000534556 API5Q9BZZ5 524 aaKnown RBP6.38□□□□□ -1.39
USH1C-210ENST00000534556 ANKRD2Q9GZV1 360 aa6.38□□□□□ -1.39
USH1C-210ENST00000534556 CNNM1Q9NRU3 951 aa6.38□□□□□ -1.39
USH1C-210ENST00000534556 MKRN1Q9UHC7 482 aaKnown RBP6.38□□□□□ -1.39
USH1C-210ENST00000534556 HTTP42858 3142 aa6.37□□□□□ -1.39
USH1C-210ENST00000534556 FOCADQ5VW36 1801 aa6.37□□□□□ -1.39
USH1C-210ENST00000534556 DOCK2Q92608 1830 aa6.37□□□□□ -1.39
USH1C-210ENST00000534556 CNTNAP1P78357 1384 aa6.37□□□□□ -1.39
USH1C-210ENST00000534556 KIF16BQ96L93 1317 aa6.37□□□□□ -1.39
USH1C-210ENST00000534556 PNMA6EA0A0J9YXQ4 647 aa6.37□□□□□ -1.39
USH1C-210ENST00000534556 KIF4BQ2VIQ3 1234 aa6.37□□□□□ -1.39
USH1C-210ENST00000534556 TTLL5Q6EMB2 1281 aa6.37□□□□□ -1.39
USH1C-210ENST00000534556 FBXO33Q7Z6M2 555 aa6.37□□□□□ -1.39
USH1C-210ENST00000534556 USP48Q86UV5 1035 aa6.37□□□□□ -1.39
USH1C-210ENST00000534556 TDRD7Q8NHU6 1098 aaKnown RBP6.37□□□□□ -1.39
USH1C-210ENST00000534556 PANK1Q8TE04 598 aa6.37□□□□□ -1.39
USH1C-210ENST00000534556 COA1Q9GZY4 146 aa6.37□□□□□ -1.39
USH1C-210ENST00000534556 SIL1Q9H173 461 aa6.37□□□□□ -1.39
USH1C-210ENST00000534556 CREBZFQ9NS37 354 aa6.37□□□□□ -1.39
USH1C-210ENST00000534556 IQSEC3Q9UPP2 1182 aaPredicted RBP6.37□□□□□ -1.39
USH1C-210ENST00000534556 CENPFP49454 3210 aa6.37□□□□□ -1.39
USH1C-210ENST00000534556 TNRC18O15417 2968 aaPredicted RBP6.37□□□□□ -1.39
USH1C-210ENST00000534556 MYH7P12883 1935 aa6.37□□□□□ -1.39
USH1C-210ENST00000534556 SSC5DA1L4H1 1573 aa6.36□□□□□ -1.39
USH1C-210ENST00000534556 FAM205AQ6ZU69 1335 aa6.36□□□□□ -1.39
USH1C-210ENST00000534556 TMEM88BA6NKF7 163 aa6.36□□□□□ -1.39
USH1C-210ENST00000534556 H7C1D1 291 aa6.36□□□□□ -1.39
USH1C-210ENST00000534556 EYA2O00167 538 aa6.36□□□□□ -1.39
USH1C-210ENST00000534556 SASH1O94885 1247 aa6.36□□□□□ -1.39
USH1C-210ENST00000534556 PDE8BO95263 885 aa6.36□□□□□ -1.39
USH1C-210ENST00000534556 UBTFL1P0CB47 393 aaPredicted RBP6.36□□□□□ -1.39
USH1C-210ENST00000534556 RPS12P25398 132 aaKnown RBP6.36□□□□□ -1.39
USH1C-210ENST00000534556 ADORA1P30542 326 aa6.36□□□□□ -1.39
USH1C-210ENST00000534556 VEGFBP49765 207 aa6.36□□□□□ -1.39
USH1C-210ENST00000534556 BCAMP50895 628 aa6.36□□□□□ -1.39
USH1C-210ENST00000534556 MTX1Q13505 466 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms