RNA–Protein interactions for RNA: ENST00000533440.1

NXF1-215, Transcript of nuclear RNA export factor 1, human

TSL 2

Gene NXF1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-215	ENST00000533440	XDH	P47989	1333 aa		10.18	□□□□□ -0.78
NXF1-215	ENST00000533440	MYCN	P04198	464 aa	Predicted RBP	10.18	□□□□□ -0.78
NXF1-215	ENST00000533440	HOXB7	P09629	217 aa		10.18	□□□□□ -0.78
NXF1-215	ENST00000533440	HSP90B1	P14625	803 aa	Known RBP	10.18	□□□□□ -0.78
NXF1-215	ENST00000533440	ATP2B4	P23634	1241 aa		10.18	□□□□□ -0.78
NXF1-215	ENST00000533440	TMPO	P42166	694 aa	Known RBP	10.18	□□□□□ -0.78
NXF1-215	ENST00000533440	INHBE	P58166	350 aa		10.18	□□□□□ -0.78
NXF1-215	ENST00000533440	LMOD3	Q0VAK6	560 aa		10.18	□□□□□ -0.78
NXF1-215	ENST00000533440	DACT2	Q5SW24	774 aa		10.18	□□□□□ -0.78
NXF1-215	ENST00000533440	HDGFL1	Q5TGJ6	251 aa		10.18	□□□□□ -0.78
NXF1-215	ENST00000533440	ARMC9	Q7Z3E5	817 aa		10.18	□□□□□ -0.78
NXF1-215	ENST00000533440	DBF4	Q9UBU7	674 aa	Predicted RBP	10.18	□□□□□ -0.78
NXF1-215	ENST00000533440	ZNF646	O15015	1829 aa	Predicted RBP	10.18	□□□□□ -0.78
NXF1-215	ENST00000533440	MANSC4	A6NHS7	340 aa	Predicted RBP	10.17	□□□□□ -0.78
NXF1-215	ENST00000533440	MMP14	P50281	582 aa		10.17	□□□□□ -0.78
NXF1-215	ENST00000533440	CCDC152	Q4G0S7	254 aa		10.17	□□□□□ -0.78
NXF1-215	ENST00000533440	IFNL1	Q8IU54	200 aa		10.17	□□□□□ -0.78
NXF1-215	ENST00000533440	ARMC5	Q96C12	935 aa		10.17	□□□□□ -0.78
NXF1-215	ENST00000533440	HYPK	Q9NX55	129 aa		10.17	□□□□□ -0.78
NXF1-215	ENST00000533440	PTPN22	Q9Y2R2	807 aa		10.17	□□□□□ -0.78
NXF1-215	ENST00000533440	MED23	Q9ULK4	1368 aa		10.16	□□□□□ -0.78
NXF1-215	ENST00000533440	MYO3B	Q8WXR4	1341 aa		10.16	□□□□□ -0.78
NXF1-215	ENST00000533440	WTIP	A6NIX2	430 aa	Predicted RBP	10.16	□□□□□ -0.78
NXF1-215	ENST00000533440	PDE8A	O60658	829 aa		10.16	□□□□□ -0.78
NXF1-215	ENST00000533440	MAP3K11	Q16584	847 aa		10.16	□□□□□ -0.78
NXF1-215	ENST00000533440	STRIP1	Q5VSL9	837 aa		10.16	□□□□□ -0.78
NXF1-215	ENST00000533440	APOBEC3F	Q8IUX4	373 aa	Known RBP	10.16	□□□□□ -0.78
NXF1-215	ENST00000533440	OGFOD1	Q8N543	542 aa		10.16	□□□□□ -0.78
NXF1-215	ENST00000533440	ZBED3	Q96IU2	234 aa	Predicted RBP	10.16	□□□□□ -0.78
NXF1-215	ENST00000533440	MXD3	Q9BW11	206 aa		10.16	□□□□□ -0.78
NXF1-215	ENST00000533440	LAMB1	P07942	1786 aa		10.16	□□□□□ -0.78
NXF1-215	ENST00000533440	IGF2BP3	O00425	579 aa	Known RBP eCLIP	10.15	□□□□□ -0.78
NXF1-215	ENST00000533440	SASH1	O94885	1247 aa		10.15	□□□□□ -0.78
NXF1-215	ENST00000533440	PCCA	P05165	728 aa	Predicted RBP	10.15	□□□□□ -0.78
NXF1-215	ENST00000533440	ZBTB48	P10074	688 aa	Predicted RBP	10.15	□□□□□ -0.78
NXF1-215	ENST00000533440	EN2	P19622	333 aa	Predicted RBP	10.15	□□□□□ -0.78
NXF1-215	ENST00000533440	PRKG1	Q13976	671 aa		10.15	□□□□□ -0.78
NXF1-215	ENST00000533440	ANKRD18A	Q8IVF6	992 aa		10.15	□□□□□ -0.78
NXF1-215	ENST00000533440	CCDC191	Q8NCU4	936 aa		10.15	□□□□□ -0.78
NXF1-215	ENST00000533440	ERO1A	Q96HE7	468 aa		10.15	□□□□□ -0.78
NXF1-215	ENST00000533440	ANGEL1	Q9UNK9	670 aa	Known RBP	10.15	□□□□□ -0.78
NXF1-215	ENST00000533440	UNCX	A6NJT0	531 aa		10.14	□□□□□ -0.79
NXF1-215	ENST00000533440	RIC3	Q7Z5B4	369 aa		10.14	□□□□□ -0.79
NXF1-215	ENST00000533440	CD99L2	Q8TCZ2	262 aa		10.14	□□□□□ -0.79
NXF1-215	ENST00000533440	SLC10A4	Q96EP9	437 aa		10.14	□□□□□ -0.79
NXF1-215	ENST00000533440	WNK4	Q96J92	1243 aa		10.14	□□□□□ -0.79
NXF1-215	ENST00000533440	CCDC85A	Q96PX6	553 aa	Predicted RBP	10.14	□□□□□ -0.79
NXF1-215	ENST00000533440	COA1	Q9GZY4	146 aa		10.14	□□□□□ -0.79
NXF1-215	ENST00000533440	MINPP1	Q9UNW1	487 aa		10.14	□□□□□ -0.79
NXF1-215	ENST00000533440	COLQ	Q9Y215	455 aa	Predicted RBP	10.14	□□□□□ -0.79
NXF1-215	ENST00000533440	COL1A1	P02452	1464 aa	Predicted RBP	10.14	□□□□□ -0.79
NXF1-215	ENST00000533440	CCT4	P50991	539 aa	Known RBP	10.13	□□□□□ -0.79
NXF1-215	ENST00000533440	CAP1	Q01518	475 aa		10.13	□□□□□ -0.79
NXF1-215	ENST00000533440	MYD88	Q99836	296 aa		10.13	□□□□□ -0.79
NXF1-215	ENST00000533440	EFCC1	Q9HA90	598 aa		10.13	□□□□□ -0.79
NXF1-215	ENST00000533440	BSDC1	Q9NW68	430 aa	Predicted RBP	10.13	□□□□□ -0.79
NXF1-215	ENST00000533440	FZD1	Q9UP38	647 aa		10.13	□□□□□ -0.79
NXF1-215	ENST00000533440	TRIM35	Q9UPQ4	493 aa		10.13	□□□□□ -0.79
NXF1-215	ENST00000533440	LAS1L	Q9Y4W2	734 aa	Known RBP	10.13	□□□□□ -0.79
NXF1-215	ENST00000533440	RANBP2	P49792	3224 aa	Known RBP	10.13	□□□□□ -0.79
NXF1-215	ENST00000533440	SSC5D	A1L4H1	1573 aa		10.13	□□□□□ -0.79
NXF1-215	ENST00000533440	GOLGA2	Q08379	1002 aa		10.12	□□□□□ -0.79
NXF1-215	ENST00000533440	CRHR2	Q13324	411 aa		10.12	□□□□□ -0.79
NXF1-215	ENST00000533440	DUSP27	Q5VZP5	1158 aa		10.12	□□□□□ -0.79
NXF1-215	ENST00000533440	TTLL5	Q6EMB2	1281 aa		10.12	□□□□□ -0.79
NXF1-215	ENST00000533440	TXNRD3	Q86VQ6	643 aa		10.12	□□□□□ -0.79
NXF1-215	ENST00000533440	JARID2	Q92833	1246 aa	Predicted RBP	10.12	□□□□□ -0.79
NXF1-215	ENST00000533440	ZNF333	Q96JL9	665 aa		10.12	□□□□□ -0.79
NXF1-215	ENST00000533440	CLMN	Q96JQ2	1002 aa		10.12	□□□□□ -0.79
NXF1-215	ENST00000533440	CDC5L	Q99459	802 aa	Known RBP	10.12	□□□□□ -0.79
NXF1-215	ENST00000533440	DEFB129	Q9H1M3	183 aa		10.12	□□□□□ -0.79
NXF1-215	ENST00000533440	PHAX	Q9H814	394 aa	Known RBP	10.12	□□□□□ -0.79
NXF1-215	ENST00000533440	CWC25	Q9NXE8	425 aa	Predicted RBP	10.12	□□□□□ -0.79
NXF1-215	ENST00000533440	TRIOBP	Q9H2D6	2365 aa		10.11	□□□□□ -0.79
NXF1-215	ENST00000533440	CEP290	O15078	2479 aa		10.11	□□□□□ -0.79
NXF1-215	ENST00000533440	TESPA1	A2RU30	521 aa	Predicted RBP	10.11	□□□□□ -0.79
NXF1-215	ENST00000533440	PPP1R12B	O60237	982 aa	Predicted RBP	10.11	□□□□□ -0.79
NXF1-215	ENST00000533440	GJA5	P36382	358 aa		10.11	□□□□□ -0.79
NXF1-215	ENST00000533440	CTSW	P56202	376 aa		10.11	□□□□□ -0.79
NXF1-215	ENST00000533440	SP3	Q02447	781 aa		10.11	□□□□□ -0.79
NXF1-215	ENST00000533440	NEUROD2	Q15784	382 aa		10.11	□□□□□ -0.79
NXF1-215	ENST00000533440	OTUD7B	Q6GQQ9	843 aa		10.11	□□□□□ -0.79
NXF1-215	ENST00000533440	KIAA0825	Q8IV33	1275 aa		10.11	□□□□□ -0.79
NXF1-215	ENST00000533440	MTMR14	Q8NCE2	650 aa		10.11	□□□□□ -0.79
NXF1-215	ENST00000533440	TTLL11	Q8NHH1	800 aa		10.11	□□□□□ -0.79
NXF1-215	ENST00000533440	FBXW7	Q969H0	707 aa		10.11	□□□□□ -0.79
NXF1-215	ENST00000533440	OTUD5	Q96G74	571 aa		10.11	□□□□□ -0.79
NXF1-215	ENST00000533440	PTPN18	Q99952	460 aa		10.11	□□□□□ -0.79
NXF1-215	ENST00000533440	TMEM106C	Q9BVX2	250 aa		10.11	□□□□□ -0.79
NXF1-215	ENST00000533440	LEMD3	Q9Y2U8	911 aa		10.11	□□□□□ -0.79
NXF1-215	ENST00000533440	PPP2R3B	Q9Y5P8	575 aa		10.11	□□□□□ -0.79
NXF1-215	ENST00000533440	METTL22	Q9BUU2	404 aa	Predicted RBP	10.1	□□□□□ -0.79
NXF1-215	ENST00000533440	GREM2	Q9H772	168 aa		10.1	□□□□□ -0.79
NXF1-215	ENST00000533440	ZNF804B	A4D1E1	1349 aa		10.09	□□□□□ -0.79
NXF1-215	ENST00000533440	GTF2I	P78347	998 aa		10.09	□□□□□ -0.79
NXF1-215	ENST00000533440	DLGAP5	Q15398	846 aa		10.09	□□□□□ -0.79
NXF1-215	ENST00000533440	SUPT20HL1	Q3ZLR7	823 aa		10.09	□□□□□ -0.79
NXF1-215	ENST00000533440	NBPF11	Q86T75	865 aa		10.09	□□□□□ -0.79
NXF1-215	ENST00000533440		U3KPZ7	1027 aa	Predicted RBP	10.09	□□□□□ -0.79
NXF1-215	ENST00000533440	ECM29	Q5VYK3	1845 aa		10.08	□□□□□ -0.8

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