RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 MAP4K3Q8IVH8 894 aa8.45□□□□□ -1.06
CD44-231ENST00000531110 DCAF11Q8TEB1 546 aa8.45□□□□□ -1.06
CD44-231ENST00000531110 CCDC74AQ96AQ1 378 aa8.45□□□□□ -1.06
CD44-231ENST00000531110 ANKRD33BA6NCL7 494 aa8.44□□□□□ -1.06
CD44-231ENST00000531110 PTPRAP18433 802 aa8.44□□□□□ -1.06
CD44-231ENST00000531110 ATP11AP98196 1134 aa8.44□□□□□ -1.06
CD44-231ENST00000531110 ALG1LQ6GMV1 187 aa8.44□□□□□ -1.06
CD44-231ENST00000531110 C8orf86Q6ZUL3 223 aa8.44□□□□□ -1.06
CD44-231ENST00000531110 WFDC8Q8IUA0 241 aa8.44□□□□□ -1.06
CD44-231ENST00000531110 OSMRQ99650 979 aa8.44□□□□□ -1.06
CD44-231ENST00000531110 ZKSCAN3Q9BRR0 538 aa8.44□□□□□ -1.06
CD44-231ENST00000531110 PDE2AO00408 941 aaPredicted RBP8.43□□□□□ -1.06
CD44-231ENST00000531110 USPL1Q5W0Q7 1092 aa8.43□□□□□ -1.06
CD44-231ENST00000531110 CEP135Q66GS9 1140 aa8.43□□□□□ -1.06
CD44-231ENST00000531110 NPAS4Q8IUM7 802 aa8.43□□□□□ -1.06
CD44-231ENST00000531110 NXPE3Q969Y0 559 aa8.43□□□□□ -1.06
CD44-231ENST00000531110 PLVAPQ9BX97 442 aa8.43□□□□□ -1.06
CD44-231ENST00000531110 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.43□□□□□ -1.06
CD44-231ENST00000531110 PNMA6FA0A0J9YX94 578 aa8.42□□□□□ -1.06
CD44-231ENST00000531110 A0A1W2PP55 124 aa8.42□□□□□ -1.06
CD44-231ENST00000531110 SPATA31C1P0DKV0 1188 aa8.42□□□□□ -1.06
CD44-231ENST00000531110 BAG6P46379 1132 aa8.42□□□□□ -1.06
CD44-231ENST00000531110 ATP2B2Q01814 1243 aa8.42□□□□□ -1.06
CD44-231ENST00000531110 TRIM26Q12899 539 aaPredicted RBP8.42□□□□□ -1.06
CD44-231ENST00000531110 PRPF40BQ6NWY9 871 aaKnown RBP8.42□□□□□ -1.06
CD44-231ENST00000531110 CCNJLQ8IV13 435 aa8.42□□□□□ -1.06
CD44-231ENST00000531110 FRMD6Q96NE9 622 aa8.42□□□□□ -1.06
CD44-231ENST00000531110 POP1Q99575 1024 aaKnown RBP8.42□□□□□ -1.06
CD44-231ENST00000531110 TRIM33Q9UPN9 1127 aa8.42□□□□□ -1.06
CD44-231ENST00000531110 TRAK1Q9UPV9 953 aa8.42□□□□□ -1.06
CD44-231ENST00000531110 FAM177BA6PVY3 158 aa8.41□□□□□ -1.06
CD44-231ENST00000531110 GIPC1O14908 333 aa8.41□□□□□ -1.06
CD44-231ENST00000531110 EIF4EBP3O60516 100 aaPredicted RBP8.41□□□□□ -1.06
CD44-231ENST00000531110 P4HBP07237 508 aaKnown RBP8.41□□□□□ -1.06
CD44-231ENST00000531110 RAC1P63000 192 aa8.41□□□□□ -1.06
CD44-231ENST00000531110 PTPN12Q05209 780 aaKnown RBP8.41□□□□□ -1.06
CD44-231ENST00000531110 PRRT3Q5FWE3 981 aa8.41□□□□□ -1.06
CD44-231ENST00000531110 WNT8BQ93098 351 aa8.41□□□□□ -1.06
CD44-231ENST00000531110 SUV39H2Q9H5I1 410 aa8.41□□□□□ -1.06
CD44-231ENST00000531110 NPHS2Q9NP85 383 aa8.41□□□□□ -1.06
CD44-231ENST00000531110 POLR3DP05423 398 aaPredicted RBP8.4□□□□□ -1.06
CD44-231ENST00000531110 CDC27P30260 824 aa8.4□□□□□ -1.06
CD44-231ENST00000531110 MAPK8P45983 427 aa8.4□□□□□ -1.06
CD44-231ENST00000531110 BSNDQ8WZ55 320 aa8.4□□□□□ -1.06
CD44-231ENST00000531110 SRCIN1Q9C0H9 1055 aa8.4□□□□□ -1.06
CD44-231ENST00000531110 LATS2Q9NRM7 1088 aa8.4□□□□□ -1.06
CD44-231ENST00000531110 NLRP2Q9NX02 1062 aa8.4□□□□□ -1.06
CD44-231ENST00000531110 SOX13Q9UN79 622 aa8.4□□□□□ -1.06
CD44-231ENST00000531110 PPME1Q9Y570 386 aa8.4□□□□□ -1.06
CD44-231ENST00000531110 A0A0A0MRY4 1105 aa8.39□□□□□ -1.07
CD44-231ENST00000531110 PRPF40AO75400 957 aaKnown RBP8.39□□□□□ -1.07
CD44-231ENST00000531110 ACPPP15309 386 aa8.39□□□□□ -1.07
CD44-231ENST00000531110 ELNP15502 786 aa8.39□□□□□ -1.07
CD44-231ENST00000531110 COL8A1P27658 744 aa8.39□□□□□ -1.07
CD44-231ENST00000531110 IRS1P35568 1242 aa8.39□□□□□ -1.07
CD44-231ENST00000531110 RANGAP1P46060 587 aaPredicted RBP8.39□□□□□ -1.07
CD44-231ENST00000531110 GSK3AP49840 483 aa8.39□□□□□ -1.07
CD44-231ENST00000531110 TRIM28Q13263 835 aaKnown RBP8.39□□□□□ -1.07
CD44-231ENST00000531110 EAPPQ56P03 285 aaPredicted RBP8.39□□□□□ -1.07
CD44-231ENST00000531110 TRAPPC3LQ5T215 181 aa8.39□□□□□ -1.07
CD44-231ENST00000531110 GDF6Q6KF10 455 aaPredicted RBP8.39□□□□□ -1.07
CD44-231ENST00000531110 FAM9AQ8IZU1 332 aaPredicted RBP8.39□□□□□ -1.07
CD44-231ENST00000531110 IL22RA1Q8N6P7 574 aa8.39□□□□□ -1.07
CD44-231ENST00000531110 TCF12Q99081 682 aa8.39□□□□□ -1.07
CD44-231ENST00000531110 LIN7BQ9HAP6 207 aa8.39□□□□□ -1.07
CD44-231ENST00000531110 CABP4P57796 275 aa8.38□□□□□ -1.07
CD44-231ENST00000531110 FBXO11Q86XK2 927 aa8.38□□□□□ -1.07
CD44-231ENST00000531110 FMR1NBQ8N0W7 255 aaPredicted RBP8.38□□□□□ -1.07
CD44-231ENST00000531110 ZFYVE1Q9HBF4 777 aa8.38□□□□□ -1.07
CD44-231ENST00000531110 H3BRJ5 948 aa8.37□□□□□ -1.07
CD44-231ENST00000531110 LDHBP07195 334 aaKnown RBP8.37□□□□□ -1.07
CD44-231ENST00000531110 XRCC5P13010 732 aaKnown RBP8.37□□□□□ -1.07
CD44-231ENST00000531110 ITPKAP23677 461 aa8.37□□□□□ -1.07
CD44-231ENST00000531110 RASSF7Q02833 373 aa8.37□□□□□ -1.07
CD44-231ENST00000531110 FBXO33Q7Z6M2 555 aa8.37□□□□□ -1.07
CD44-231ENST00000531110 DMRTC2Q8IXT2 367 aaPredicted RBP8.37□□□□□ -1.07
CD44-231ENST00000531110 NACC1Q96RE7 527 aa8.37□□□□□ -1.07
CD44-231ENST00000531110 EHD4Q9H223 541 aa8.37□□□□□ -1.07
CD44-231ENST00000531110 MFAP1P55081 439 aaKnown RBP8.36□□□□□ -1.07
CD44-231ENST00000531110 PIP4K2BP78356 416 aa8.36□□□□□ -1.07
CD44-231ENST00000531110 RPS26P11Q5JNZ5 115 aaPredicted RBP8.36□□□□□ -1.07
CD44-231ENST00000531110 FAM117BQ6P1L5 589 aa8.36□□□□□ -1.07
CD44-231ENST00000531110 EPS8L3Q8TE67 593 aaKnown RBP8.36□□□□□ -1.07
CD44-231ENST00000531110 DCAF5Q96JK2 942 aa8.36□□□□□ -1.07
CD44-231ENST00000531110 HHIPQ96QV1 700 aa8.36□□□□□ -1.07
CD44-231ENST00000531110 LACRTQ9GZZ8 138 aa8.36□□□□□ -1.07
CD44-231ENST00000531110 SOX17Q9H6I2 414 aaPredicted RBP8.36□□□□□ -1.07
CD44-231ENST00000531110 OSGEPQ9NPF4 335 aa8.36□□□□□ -1.07
CD44-231ENST00000531110 PPP4R2Q9NY27 417 aa8.36□□□□□ -1.07
CD44-231ENST00000531110 SPG7Q9UQ90 795 aa8.36□□□□□ -1.07
CD44-231ENST00000531110 GADD45BO75293 160 aaPredicted RBP8.35□□□□□ -1.07
CD44-231ENST00000531110 EPHA1P21709 976 aa8.35□□□□□ -1.07
CD44-231ENST00000531110 ITGAEP38570 1179 aa8.35□□□□□ -1.07
CD44-231ENST00000531110 GRM2Q14416 872 aa8.35□□□□□ -1.07
CD44-231ENST00000531110 SETDB1Q15047 1291 aa8.35□□□□□ -1.07
CD44-231ENST00000531110 KLHL23Q8NBE8 558 aa8.35□□□□□ -1.07
CD44-231ENST00000531110 GLIS3Q8NEA6 775 aa8.35□□□□□ -1.07
CD44-231ENST00000531110 ANKRD24Q8TF21 1146 aa8.35□□□□□ -1.07
CD44-231ENST00000531110 ABCB6Q9NP58 842 aa8.35□□□□□ -1.07
CD44-231ENST00000531110 A0A096LPE4 126 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms