RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 A0A1B0GUL6 1792 aa16.79■□□□□ 0.28
VPS28-211ENST00000530790 TRPM7Q96QT4 1865 aa16.78■□□□□ 0.28
VPS28-211ENST00000530790 CELF2O95319 508 aaKnown RBP16.78■□□□□ 0.28
VPS28-211ENST00000530790 KLRK1P26718 216 aa16.78■□□□□ 0.28
VPS28-211ENST00000530790 VEGFBP49765 207 aa16.78■□□□□ 0.28
VPS28-211ENST00000530790 DEFB115Q30KQ5 88 aa16.78■□□□□ 0.28
VPS28-211ENST00000530790 DIEXFQ68CQ4 756 aaKnown RBP16.78■□□□□ 0.28
VPS28-211ENST00000530790 LDHAL6AQ6ZMR3 332 aa16.78■□□□□ 0.28
VPS28-211ENST00000530790 TXNRD3Q86VQ6 643 aa16.78■□□□□ 0.28
VPS28-211ENST00000530790 CNNM1Q9NRU3 951 aa16.78■□□□□ 0.28
VPS28-211ENST00000530790 MYO3BQ8WXR4 1341 aa16.77■□□□□ 0.28
VPS28-211ENST00000530790 TAF5LO75529 589 aa16.77■□□□□ 0.28
VPS28-211ENST00000530790 USP17L8P0C7I0 530 aa16.77■□□□□ 0.28
VPS28-211ENST00000530790 ZNF280AP59817 542 aaPredicted RBP16.77■□□□□ 0.28
VPS28-211ENST00000530790 CST9Q5W186 159 aa16.77■□□□□ 0.28
VPS28-211ENST00000530790 PAXIP1Q6ZW49 1069 aaPredicted RBP16.77■□□□□ 0.28
VPS28-211ENST00000530790 DCPSQ96C86 337 aaKnown RBP16.77■□□□□ 0.28
VPS28-211ENST00000530790 ZNF594Q96JF6 807 aaPredicted RBP16.77■□□□□ 0.28
VPS28-211ENST00000530790 ZNF408Q9H9D4 720 aa16.77■□□□□ 0.28
VPS28-211ENST00000530790 GGA3Q9NZ52 723 aa16.77■□□□□ 0.28
VPS28-211ENST00000530790 DACT2Q5SW24 774 aa16.76■□□□□ 0.27
VPS28-211ENST00000530790 STRIP1Q5VSL9 837 aa16.76■□□□□ 0.27
VPS28-211ENST00000530790 KRT26Q7Z3Y9 468 aa16.76■□□□□ 0.27
VPS28-211ENST00000530790 HELBQ8NG08 1087 aaPredicted RBP16.76■□□□□ 0.27
VPS28-211ENST00000530790 GMLQ99445 158 aa16.76■□□□□ 0.27
VPS28-211ENST00000530790 BICC1Q9H694 974 aaKnown RBP16.76■□□□□ 0.27
VPS28-211ENST00000530790 TLL2Q9Y6L7 1015 aa16.76■□□□□ 0.27
VPS28-211ENST00000530790 ZNF804AQ7Z570 1209 aa16.75■□□□□ 0.27
VPS28-211ENST00000530790 USP48Q86UV5 1035 aa16.75■□□□□ 0.27
VPS28-211ENST00000530790 KAZALD1Q96I82 304 aa16.75■□□□□ 0.27
VPS28-211ENST00000530790 MYOZ2Q9NPC6 264 aa16.75■□□□□ 0.27
VPS28-211ENST00000530790 ZNF646O15015 1829 aaPredicted RBP16.75■□□□□ 0.27
VPS28-211ENST00000530790 THSD7BQ9C0I4 1608 aa16.74■□□□□ 0.27
VPS28-211ENST00000530790 WDR33Q9C0J8 1336 aaKnown RBP16.74■□□□□ 0.27
VPS28-211ENST00000530790 SNAP23O00161 211 aa16.74■□□□□ 0.27
VPS28-211ENST00000530790 PLIN1O60240 522 aa16.74■□□□□ 0.27
VPS28-211ENST00000530790 ECE1P42892 770 aa16.74■□□□□ 0.27
VPS28-211ENST00000530790 RABL6Q3YEC7 729 aaPredicted RBP16.74■□□□□ 0.27
VPS28-211ENST00000530790 C15orf52Q6ZUT6 534 aaKnown RBP16.74■□□□□ 0.27
VPS28-211ENST00000530790 SULF1Q8IWU6 871 aa16.74■□□□□ 0.27
VPS28-211ENST00000530790 MIER1Q8N108 512 aa16.74■□□□□ 0.27
VPS28-211ENST00000530790 OGFOD1Q8N543 542 aa16.74■□□□□ 0.27
VPS28-211ENST00000530790 KIF16BQ96L93 1317 aa16.73■□□□□ 0.27
VPS28-211ENST00000530790 IRS2Q9Y4H2 1338 aa16.73■□□□□ 0.27
VPS28-211ENST00000530790 ADM5C9JUS6 153 aa16.73■□□□□ 0.27
VPS28-211ENST00000530790 TTLL5Q6EMB2 1281 aa16.73■□□□□ 0.27
VPS28-211ENST00000530790 ANKRD44Q8N8A2 993 aa16.73■□□□□ 0.27
VPS28-211ENST00000530790 AIDAQ96BJ3 306 aa16.73■□□□□ 0.27
VPS28-211ENST00000530790 CAPNS2Q96L46 248 aa16.73■□□□□ 0.27
VPS28-211ENST00000530790 MXD3Q9BW11 206 aa16.73■□□□□ 0.27
VPS28-211ENST00000530790 API5Q9BZZ5 524 aaKnown RBP16.73■□□□□ 0.27
VPS28-211ENST00000530790 USP44Q9H0E7 712 aa16.73■□□□□ 0.27
VPS28-211ENST00000530790 CD209Q9NNX6 404 aa16.73■□□□□ 0.27
VPS28-211ENST00000530790 BRPF1P55201 1214 aaPredicted RBP16.72■□□□□ 0.27
VPS28-211ENST00000530790 GTF2IP78347 998 aa16.72■□□□□ 0.27
VPS28-211ENST00000530790 GRM1Q13255 1194 aa16.72■□□□□ 0.27
VPS28-211ENST00000530790 SCARF1Q14162 830 aa16.72■□□□□ 0.27
VPS28-211ENST00000530790 ANGEL2Q5VTE6 544 aaKnown RBP16.72■□□□□ 0.27
VPS28-211ENST00000530790 CYP4F22Q6NT55 531 aa16.72■□□□□ 0.27
VPS28-211ENST00000530790 SAPCD2Q86UD0 394 aa16.72■□□□□ 0.27
VPS28-211ENST00000530790 NOB1Q9ULX3 412 aaKnown RBP16.72■□□□□ 0.27
VPS28-211ENST00000530790 ASTN2O75129 1339 aaPredicted RBP16.71■□□□□ 0.27
VPS28-211ENST00000530790 MROH5Q6ZUA9 1318 aa16.71■□□□□ 0.27
VPS28-211ENST00000530790 MMP14P50281 582 aa16.71■□□□□ 0.27
VPS28-211ENST00000530790 RARSP54136 660 aaKnown RBP16.71■□□□□ 0.27
VPS28-211ENST00000530790 HHIPL1Q96JK4 782 aa16.71■□□□□ 0.27
VPS28-211ENST00000530790 HDAC9Q9UKV0 1011 aa16.71■□□□□ 0.27
VPS28-211ENST00000530790 PITPNM2Q9BZ72 1349 aa16.7■□□□□ 0.26
VPS28-211ENST00000530790 HNRNPUQ00839 825 aaKnown RBP eCLIP16.7■□□□□ 0.26
VPS28-211ENST00000530790 UBE4AQ14139 1066 aa16.7■□□□□ 0.26
VPS28-211ENST00000530790 DLK2Q6UY11 383 aa16.7■□□□□ 0.26
VPS28-211ENST00000530790 KIAA0825Q8IV33 1275 aa16.7■□□□□ 0.26
VPS28-211ENST00000530790 PUS3Q9BZE2 481 aaKnown RBP16.7■□□□□ 0.26
VPS28-211ENST00000530790 UBTFL1P0CB47 393 aaPredicted RBP16.69■□□□□ 0.26
VPS28-211ENST00000530790 IL1R1P14778 569 aa16.69■□□□□ 0.26
VPS28-211ENST00000530790 MAP2K1Q02750 393 aaPredicted RBP16.69■□□□□ 0.26
VPS28-211ENST00000530790 IFFO2Q5TF58 517 aa16.69■□□□□ 0.26
VPS28-211ENST00000530790 GBA2Q9HCG7 927 aaPredicted RBP16.69■□□□□ 0.26
VPS28-211ENST00000530790 RIPOR2Q9Y4F9 1068 aa16.69■□□□□ 0.26
VPS28-211ENST00000530790 FOXN1O15353 648 aa16.68■□□□□ 0.26
VPS28-211ENST00000530790 HUNKP57058 714 aa16.68■□□□□ 0.26
VPS28-211ENST00000530790 METTL24Q5JXM2 366 aa16.68■□□□□ 0.26
VPS28-211ENST00000530790 COL13A1Q5TAT6 717 aaPredicted RBP16.68■□□□□ 0.26
VPS28-211ENST00000530790 C2orf69Q8N8R5 385 aa16.68■□□□□ 0.26
VPS28-211ENST00000530790 CDCA5Q96FF9 252 aa16.68■□□□□ 0.26
VPS28-211ENST00000530790 WBP1LQ9NX94 342 aa16.68■□□□□ 0.26
VPS28-211ENST00000530790 WNT10BO00744 389 aa16.67■□□□□ 0.26
VPS28-211ENST00000530790 SASH1O94885 1247 aa16.67■□□□□ 0.26
VPS28-211ENST00000530790 NBPF9Q3BBW0 867 aa16.67■□□□□ 0.26
VPS28-211ENST00000530790 LRRC24Q50LG9 513 aa16.67■□□□□ 0.26
VPS28-211ENST00000530790 HDAC5Q9UQL6 1122 aa16.67■□□□□ 0.26
VPS28-211ENST00000530790 HIBADHP31937 336 aaKnown RBP16.66■□□□□ 0.26
VPS28-211ENST00000530790 GYG1P46976 350 aa16.66■□□□□ 0.26
VPS28-211ENST00000530790 CTCFP49711 727 aaPredicted RBP16.66■□□□□ 0.26
VPS28-211ENST00000530790 FKBP1AP62942 108 aaKnown RBP16.66■□□□□ 0.26
VPS28-211ENST00000530790 VPS37DQ86XT2 251 aa16.66■□□□□ 0.26
VPS28-211ENST00000530790 CERS5Q8N5B7 392 aa16.66■□□□□ 0.26
VPS28-211ENST00000530790 KLHDC4Q8TBB5 520 aa16.66■□□□□ 0.26
VPS28-211ENST00000530790 ARHGAP45Q92619 1136 aa16.66■□□□□ 0.26
VPS28-211ENST00000530790 BEGAINQ9BUH8 593 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms