RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 GRIK5Q16478 980 aa10.12□□□□□ -0.79
PCF11-202ENST00000528336 PI16Q6UXB8 463 aa10.12□□□□□ -0.79
PCF11-202ENST00000528336 POP1Q99575 1024 aaKnown RBP10.12□□□□□ -0.79
PCF11-202ENST00000528336 PRDM6Q9NQX0 595 aa10.12□□□□□ -0.79
PCF11-202ENST00000528336 NFKBIEO00221 500 aa10.11□□□□□ -0.79
PCF11-202ENST00000528336 LDHBP07195 334 aaKnown RBP10.11□□□□□ -0.79
PCF11-202ENST00000528336 EAPPQ56P03 285 aaPredicted RBP10.11□□□□□ -0.79
PCF11-202ENST00000528336 IL22RA1Q8N6P7 574 aa10.11□□□□□ -0.79
PCF11-202ENST00000528336 SCARF2Q96GP6 870 aaPredicted RBP10.11□□□□□ -0.79
PCF11-202ENST00000528336 ERCC3P19447 782 aa10.1□□□□□ -0.79
PCF11-202ENST00000528336 COL9A3Q14050 684 aaPredicted RBP10.1□□□□□ -0.79
PCF11-202ENST00000528336 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.1□□□□□ -0.79
PCF11-202ENST00000528336 TRAPPC3LQ5T215 181 aa10.1□□□□□ -0.79
PCF11-202ENST00000528336 ADAMTSL4Q6UY14 1074 aa10.1□□□□□ -0.79
PCF11-202ENST00000528336 DMRTC2Q8IXT2 367 aaPredicted RBP10.1□□□□□ -0.79
PCF11-202ENST00000528336 TRIM11Q96F44 468 aa10.1□□□□□ -0.79
PCF11-202ENST00000528336 PLVAPQ9BX97 442 aa10.1□□□□□ -0.79
PCF11-202ENST00000528336 EHD4Q9H223 541 aa10.1□□□□□ -0.79
PCF11-202ENST00000528336 NLRP2Q9NX02 1062 aa10.1□□□□□ -0.79
PCF11-202ENST00000528336 PODXL2Q9NZ53 605 aa10.1□□□□□ -0.79
PCF11-202ENST00000528336 GNB5O14775 395 aa10.09□□□□□ -0.79
PCF11-202ENST00000528336 NID1P14543 1247 aa10.09□□□□□ -0.79
PCF11-202ENST00000528336 CDC25BP30305 580 aa10.09□□□□□ -0.79
PCF11-202ENST00000528336 WFDC8Q8IUA0 241 aa10.09□□□□□ -0.79
PCF11-202ENST00000528336 ASAP3Q8TDY4 903 aa10.09□□□□□ -0.79
PCF11-202ENST00000528336 NXPE3Q969Y0 559 aa10.09□□□□□ -0.79
PCF11-202ENST00000528336 LIN7BQ9HAP6 207 aa10.09□□□□□ -0.79
PCF11-202ENST00000528336 SH2B1Q9NRF2 756 aaPredicted RBP10.09□□□□□ -0.79
PCF11-202ENST00000528336 PTPRAP18433 802 aa10.08□□□□□ -0.8
PCF11-202ENST00000528336 COL19A1Q14993 1142 aa10.08□□□□□ -0.8
PCF11-202ENST00000528336 MSL1Q68DK7 614 aa10.08□□□□□ -0.8
PCF11-202ENST00000528336 ALG1LQ6GMV1 187 aa10.08□□□□□ -0.8
PCF11-202ENST00000528336 TMEM102Q8N9M5 508 aaPredicted RBP10.08□□□□□ -0.8
PCF11-202ENST00000528336 SUV39H2Q9H5I1 410 aa10.08□□□□□ -0.8
PCF11-202ENST00000528336 METTL12A8MUP2 240 aa10.07□□□□□ -0.8
PCF11-202ENST00000528336 PIK3R2O00459 728 aa10.07□□□□□ -0.8
PCF11-202ENST00000528336 CDC27P30260 824 aa10.07□□□□□ -0.8
PCF11-202ENST00000528336 KIAA0319Q5VV43 1072 aa10.07□□□□□ -0.8
PCF11-202ENST00000528336 FAM177BA6PVY3 158 aa10.06□□□□□ -0.8
PCF11-202ENST00000528336 BAG6P46379 1132 aa10.06□□□□□ -0.8
PCF11-202ENST00000528336 TAGLNQ01995 201 aaKnown RBP10.06□□□□□ -0.8
PCF11-202ENST00000528336 TCF12Q99081 682 aa10.06□□□□□ -0.8
PCF11-202ENST00000528336 GRM2Q14416 872 aa10.05□□□□□ -0.8
PCF11-202ENST00000528336 SPRED3Q2MJR0 410 aa10.05□□□□□ -0.8
PCF11-202ENST00000528336 CCNJLQ8IV13 435 aa10.05□□□□□ -0.8
PCF11-202ENST00000528336 FBF1Q8TES7 1133 aa10.05□□□□□ -0.8
PCF11-202ENST00000528336 RNF19AQ9NV58 838 aa10.05□□□□□ -0.8
PCF11-202ENST00000528336 CCDC9Q9Y3X0 531 aaKnown RBP10.05□□□□□ -0.8
PCF11-202ENST00000528336 FAM229AH3BQW9 127 aa10.04□□□□□ -0.8
PCF11-202ENST00000528336 PRPF40AO75400 957 aaKnown RBP10.04□□□□□ -0.8
PCF11-202ENST00000528336 TXNDC11Q6PKC3 985 aa10.04□□□□□ -0.8
PCF11-202ENST00000528336 FBXO33Q7Z6M2 555 aa10.04□□□□□ -0.8
PCF11-202ENST00000528336 DUSP9Q99956 384 aaKnown RBP10.04□□□□□ -0.8
PCF11-202ENST00000528336 BCL2L13Q9BXK5 485 aa10.04□□□□□ -0.8
PCF11-202ENST00000528336 BCO2Q9BYV7 579 aa10.04□□□□□ -0.8
PCF11-202ENST00000528336 BHLHE41Q9C0J9 482 aaPredicted RBP10.04□□□□□ -0.8
PCF11-202ENST00000528336 ADAM19Q9H013 955 aa10.04□□□□□ -0.8
PCF11-202ENST00000528336 PPME1Q9Y570 386 aa10.04□□□□□ -0.8
PCF11-202ENST00000528336 LINC01387J3KSC0 135 aa10.03□□□□□ -0.8
PCF11-202ENST00000528336 GRIA4P48058 902 aa10.03□□□□□ -0.8
PCF11-202ENST00000528336 TRIM28Q13263 835 aaKnown RBP10.03□□□□□ -0.8
PCF11-202ENST00000528336 NXPE4Q6UWF7 544 aa10.03□□□□□ -0.8
PCF11-202ENST00000528336 CACTIN-AS1Q8N1I8 211 aa10.03□□□□□ -0.8
PCF11-202ENST00000528336 BSNDQ8WZ55 320 aa10.03□□□□□ -0.8
PCF11-202ENST00000528336 PPP4R2Q9NY27 417 aa10.03□□□□□ -0.8
PCF11-202ENST00000528336 A0A096LPE4 126 aa10.02□□□□□ -0.81
PCF11-202ENST00000528336 A0A1W2PPZ6 126 aa10.02□□□□□ -0.81
PCF11-202ENST00000528336 SPDYE3A6NKU9 549 aa10.02□□□□□ -0.81
PCF11-202ENST00000528336 EPHA1P21709 976 aa10.02□□□□□ -0.81
PCF11-202ENST00000528336 MUC3BQ9H195 1237 aa10.02□□□□□ -0.81
PCF11-202ENST00000528336 NOP53Q9NZM5 478 aaKnown RBP10.02□□□□□ -0.81
PCF11-202ENST00000528336 TRAK1Q9UPV9 953 aa10.02□□□□□ -0.81
PCF11-202ENST00000528336 A0A0A0MRY4 1105 aa10.01□□□□□ -0.81
PCF11-202ENST00000528336 COL8A1P27658 744 aa10.01□□□□□ -0.81
PCF11-202ENST00000528336 CABP4P57796 275 aa10.01□□□□□ -0.81
PCF11-202ENST00000528336 RAC1P63000 192 aa10.01□□□□□ -0.81
PCF11-202ENST00000528336 GIPC2Q8TF65 315 aa10.01□□□□□ -0.81
PCF11-202ENST00000528336 OSBPL7Q9BZF2 842 aa10.01□□□□□ -0.81
PCF11-202ENST00000528336 SOX13Q9UN79 622 aa10.01□□□□□ -0.81
PCF11-202ENST00000528336 SPG7Q9UQ90 795 aa10.01□□□□□ -0.81
PCF11-202ENST00000528336 TMEM238LA0A1B0GVL6 79 aa10□□□□□ -0.81
PCF11-202ENST00000528336 FCGRTP55899 365 aa10□□□□□ -0.81
PCF11-202ENST00000528336 FGD1P98174 961 aa10□□□□□ -0.81
PCF11-202ENST00000528336 PRRT3Q5FWE3 981 aa10□□□□□ -0.81
PCF11-202ENST00000528336 GLIS3Q8NEA6 775 aa10□□□□□ -0.81
PCF11-202ENST00000528336 PARP2Q9UGN5 583 aa10□□□□□ -0.81
PCF11-202ENST00000528336 RNF225M0QZC1 329 aaPredicted RBP9.99□□□□□ -0.81
PCF11-202ENST00000528336 XPCQ01831 940 aaPredicted RBP9.99□□□□□ -0.81
PCF11-202ENST00000528336 FAM117BQ6P1L5 589 aa9.99□□□□□ -0.81
PCF11-202ENST00000528336 ILDR2Q71H61 639 aa9.99□□□□□ -0.81
PCF11-202ENST00000528336 VN1R5Q7Z5H4 357 aa9.99□□□□□ -0.81
PCF11-202ENST00000528336 ABCB6Q9NP58 842 aa9.99□□□□□ -0.81
PCF11-202ENST00000528336 PRPF40BQ6NWY9 871 aaKnown RBP9.98□□□□□ -0.81
PCF11-202ENST00000528336 DTHD1Q6ZMT9 781 aa9.98□□□□□ -0.81
PCF11-202ENST00000528336 FOXD4L4Q8WXT5 416 aaPredicted RBP9.98□□□□□ -0.81
PCF11-202ENST00000528336 SLC7A3Q8WY07 619 aa9.98□□□□□ -0.81
PCF11-202ENST00000528336 FAM161BQ96MY7 647 aa9.98□□□□□ -0.81
PCF11-202ENST00000528336 CARD10Q9BWT7 1032 aa9.98□□□□□ -0.81
PCF11-202ENST00000528336 H3BRJ5 948 aa9.97□□□□□ -0.81
PCF11-202ENST00000528336 DEAF1O75398 565 aaPredicted RBP9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms