RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 MED23Q9ULK4 1368 aa18.45■□□□□ 0.54
CPSF1-201ENST00000526271 USP17L8P0C7I0 530 aa18.45■□□□□ 0.54
CPSF1-201ENST00000526271 KSR2Q6VAB6 950 aa18.45■□□□□ 0.54
CPSF1-201ENST00000526271 ANKRD18AQ8IVF6 992 aa18.45■□□□□ 0.54
CPSF1-201ENST00000526271 USP17L3A6NCW0 530 aa18.44■□□□□ 0.54
CPSF1-201ENST00000526271 USP17L4A6NCW7 530 aa18.44■□□□□ 0.54
CPSF1-201ENST00000526271 NEURL1BA8MQ27 555 aa18.44■□□□□ 0.54
CPSF1-201ENST00000526271 ATP2B4P23634 1241 aa18.44■□□□□ 0.54
CPSF1-201ENST00000526271 USP17L1Q7RTZ2 530 aa18.44■□□□□ 0.54
CPSF1-201ENST00000526271 PITPNM2Q9BZ72 1349 aa18.44■□□□□ 0.54
CPSF1-201ENST00000526271 IRS2Q9Y4H2 1338 aa18.44■□□□□ 0.54
CPSF1-201ENST00000526271 UBE2Q2LH0YL09 131 aa18.43■□□□□ 0.54
CPSF1-201ENST00000526271 H7C1W4 665 aa18.43■□□□□ 0.54
CPSF1-201ENST00000526271 PODNQ7Z5L7 613 aa18.43■□□□□ 0.54
CPSF1-201ENST00000526271 ZBED3Q96IU2 234 aaPredicted RBP18.43■□□□□ 0.54
CPSF1-201ENST00000526271 BSDC1Q9NW68 430 aaPredicted RBP18.43■□□□□ 0.54
CPSF1-201ENST00000526271 SNAP23O00161 211 aa18.42■□□□□ 0.54
CPSF1-201ENST00000526271 CCT4P50991 539 aaKnown RBP18.42■□□□□ 0.54
CPSF1-201ENST00000526271 CCDC30Q5VVM6 783 aa18.42■□□□□ 0.54
CPSF1-201ENST00000526271 WNT10BO00744 389 aa18.41■□□□□ 0.54
CPSF1-201ENST00000526271 SOX10P56693 466 aa18.41■□□□□ 0.54
CPSF1-201ENST00000526271 R3HDMLQ9H3Y0 253 aa18.41■□□□□ 0.54
CPSF1-201ENST00000526271 AOX1Q06278 1338 aa18.41■□□□□ 0.54
CPSF1-201ENST00000526271 SASH1O94885 1247 aa18.4■□□□□ 0.54
CPSF1-201ENST00000526271 UBE3BQ7Z3V4 1068 aa18.4■□□□□ 0.54
CPSF1-201ENST00000526271 FZD1Q9UP38 647 aa18.4■□□□□ 0.54
CPSF1-201ENST00000526271 PCDHAC2Q9Y5I4 1007 aa18.4■□□□□ 0.54
CPSF1-201ENST00000526271 LAMB1P07942 1786 aa18.4■□□□□ 0.54
CPSF1-201ENST00000526271 SSC5DA1L4H1 1573 aa18.39■□□□□ 0.53
CPSF1-201ENST00000526271 G3V3G9 751 aa18.39■□□□□ 0.53
CPSF1-201ENST00000526271 DCAF8Q5TAQ9 597 aa18.39■□□□□ 0.53
CPSF1-201ENST00000526271 CDC5LQ99459 802 aaKnown RBP18.39■□□□□ 0.53
CPSF1-201ENST00000526271 PLA2G12BQ9BX93 195 aa18.39■□□□□ 0.53
CPSF1-201ENST00000526271 ECM29Q5VYK3 1845 aa18.38■□□□□ 0.53
CPSF1-201ENST00000526271 DDX58O95786 925 aaKnown RBP18.38■□□□□ 0.53
CPSF1-201ENST00000526271 HSP90B1P14625 803 aaKnown RBP18.38■□□□□ 0.53
CPSF1-201ENST00000526271 FKBP1BP68106 108 aa18.38■□□□□ 0.53
CPSF1-201ENST00000526271 WWC1Q8IX03 1113 aa18.38■□□□□ 0.53
CPSF1-201ENST00000526271 CERS5Q8N5B7 392 aa18.38■□□□□ 0.53
CPSF1-201ENST00000526271 CACNA1FO60840 1977 aa18.38■□□□□ 0.53
CPSF1-201ENST00000526271 TBC1D8O95759 1140 aa18.37■□□□□ 0.53
CPSF1-201ENST00000526271 CSF1RP07333 972 aa18.37■□□□□ 0.53
CPSF1-201ENST00000526271 CALD1Q05682 793 aaKnown RBP18.37■□□□□ 0.53
CPSF1-201ENST00000526271 GCKRQ14397 625 aa18.37■□□□□ 0.53
CPSF1-201ENST00000526271 STRIP1Q5VSL9 837 aa18.37■□□□□ 0.53
CPSF1-201ENST00000526271 CTU1Q7Z7A3 348 aaKnown RBP18.37■□□□□ 0.53
CPSF1-201ENST00000526271 ITGA6P23229 1130 aa18.36■□□□□ 0.53
CPSF1-201ENST00000526271 MKI67P46013 3256 aaKnown RBP18.36■□□□□ 0.53
CPSF1-201ENST00000526271 PTPN12Q05209 780 aaKnown RBP18.36■□□□□ 0.53
CPSF1-201ENST00000526271 TWISTNBQ3B726 338 aaPredicted RBP18.36■□□□□ 0.53
CPSF1-201ENST00000526271 ZNF296Q8WUU4 475 aaPredicted RBP18.36■□□□□ 0.53
CPSF1-201ENST00000526271 COA1Q9GZY4 146 aa18.36■□□□□ 0.53
CPSF1-201ENST00000526271 CENPFP49454 3210 aa18.36■□□□□ 0.53
CPSF1-201ENST00000526271 ZNF804BA4D1E1 1349 aa18.35■□□□□ 0.53
CPSF1-201ENST00000526271 SLC4A2P04920 1241 aa18.35■□□□□ 0.53
CPSF1-201ENST00000526271 TM4SF4P48230 202 aa18.35■□□□□ 0.53
CPSF1-201ENST00000526271 MKRN3Q13064 507 aaKnown RBP18.35■□□□□ 0.53
CPSF1-201ENST00000526271 CCDC27Q2M243 656 aa18.35■□□□□ 0.53
CPSF1-201ENST00000526271 KIAA0825Q8IV33 1275 aa18.35■□□□□ 0.53
CPSF1-201ENST00000526271 BRCA2P51587 3418 aa18.34■□□□□ 0.53
CPSF1-201ENST00000526271 HPS5Q9UPZ3 1129 aa18.34■□□□□ 0.53
CPSF1-201ENST00000526271 LEMD3Q9Y2U8 911 aa18.34■□□□□ 0.53
CPSF1-201ENST00000526271 FOXO4P98177 505 aa18.33■□□□□ 0.52
CPSF1-201ENST00000526271 CHRNDQ07001 517 aa18.33■□□□□ 0.52
CPSF1-201ENST00000526271 FLIIQ13045 1269 aa18.33■□□□□ 0.52
CPSF1-201ENST00000526271 EPHA10Q5JZY3 1008 aa18.33■□□□□ 0.52
CPSF1-201ENST00000526271 LDLRAD1Q5T700 205 aa18.33■□□□□ 0.52
CPSF1-201ENST00000526271 TTLL5Q6EMB2 1281 aa18.33■□□□□ 0.52
CPSF1-201ENST00000526271 FBXW7Q969H0 707 aa18.33■□□□□ 0.52
CPSF1-201ENST00000526271 CD209Q9NNX6 404 aa18.33■□□□□ 0.52
CPSF1-201ENST00000526271 OTOFQ9HC10 1997 aa18.33■□□□□ 0.52
CPSF1-201ENST00000526271 FANCIQ9NVI1 1328 aa18.32■□□□□ 0.52
CPSF1-201ENST00000526271 TAF5LO75529 589 aa18.32■□□□□ 0.52
CPSF1-201ENST00000526271 GTF2IP78347 998 aa18.32■□□□□ 0.52
CPSF1-201ENST00000526271 PRKG1Q13976 671 aa18.32■□□□□ 0.52
CPSF1-201ENST00000526271 HELBQ8NG08 1087 aaPredicted RBP18.32■□□□□ 0.52
CPSF1-201ENST00000526271 SPINK5Q9NQ38 1064 aaPredicted RBP18.32■□□□□ 0.52
CPSF1-201ENST00000526271 MYO3BQ8WXR4 1341 aa18.31■□□□□ 0.52
CPSF1-201ENST00000526271 GPR25O00155 361 aa18.31■□□□□ 0.52
CPSF1-201ENST00000526271 VAMP4O75379 141 aa18.31■□□□□ 0.52
CPSF1-201ENST00000526271 CAP1Q01518 475 aa18.31■□□□□ 0.52
CPSF1-201ENST00000526271 NEXNQ0ZGT2 675 aa18.31■□□□□ 0.52
CPSF1-201ENST00000526271 DNAAF4Q8WXU2 420 aa18.31■□□□□ 0.52
CPSF1-201ENST00000526271 IGHMBP2P38935 993 aaKnown RBP18.3■□□□□ 0.52
CPSF1-201ENST00000526271 REM2Q8IYK8 340 aaPredicted RBP18.3■□□□□ 0.52
CPSF1-201ENST00000526271 CLMNQ96JQ2 1002 aa18.3■□□□□ 0.52
CPSF1-201ENST00000526271 STK31Q9BXU1 1019 aa18.3■□□□□ 0.52
CPSF1-201ENST00000526271 IL16Q14005 1332 aa18.29■□□□□ 0.52
CPSF1-201ENST00000526271 F6X3S4 739 aa18.29■□□□□ 0.52
CPSF1-201ENST00000526271 SPRYD7Q5W111 196 aa18.29■□□□□ 0.52
CPSF1-201ENST00000526271 C15orf52Q6ZUT6 534 aaKnown RBP18.29■□□□□ 0.52
CPSF1-201ENST00000526271 LINS1Q8NG48 757 aa18.29■□□□□ 0.52
CPSF1-201ENST00000526271 CFHR5Q9BXR6 569 aa18.29■□□□□ 0.52
CPSF1-201ENST00000526271 GJA5P36382 358 aa18.28■□□□□ 0.52
CPSF1-201ENST00000526271 TTLL12Q14166 644 aaPredicted RBP18.28■□□□□ 0.52
CPSF1-201ENST00000526271 NOM1Q5C9Z4 860 aaKnown RBP18.28■□□□□ 0.52
CPSF1-201ENST00000526271 BEND3Q5T5X7 828 aa18.28■□□□□ 0.52
CPSF1-201ENST00000526271 OGFOD1Q8N543 542 aa18.28■□□□□ 0.52
CPSF1-201ENST00000526271 ZNF594Q96JF6 807 aaPredicted RBP18.28■□□□□ 0.52
CPSF1-201ENST00000526271 ANKRD2Q9GZV1 360 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms