RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 WDR62O43379 1518 aa7.27□□□□□ -1.25
USP48-211ENST00000526044 LILRB5O75023 590 aa7.26□□□□□ -1.25
USP48-211ENST00000526044 RGS9O75916 674 aaPredicted RBP7.26□□□□□ -1.25
USP48-211ENST00000526044 HYAL2Q12891 473 aa7.26□□□□□ -1.25
USP48-211ENST00000526044 TRIM28Q13263 835 aaKnown RBP7.26□□□□□ -1.25
USP48-211ENST00000526044 PERM1Q5SV97 790 aa7.26□□□□□ -1.25
USP48-211ENST00000526044 ELMSAN1Q6PJG2 1045 aa7.26□□□□□ -1.25
USP48-211ENST00000526044 HFE2Q6ZVN8 426 aa7.26□□□□□ -1.25
USP48-211ENST00000526044 PMEPA1Q969W9 287 aa7.26□□□□□ -1.25
USP48-211ENST00000526044 NSUN5Q96P11 429 aaKnown RBP7.26□□□□□ -1.25
USP48-211ENST00000526044 RBSNQ9H1K0 784 aa7.26□□□□□ -1.25
USP48-211ENST00000526044 FRRS1LQ9P0K9 344 aa7.26□□□□□ -1.25
USP48-211ENST00000526044 NAGPAQ9UK23 515 aa7.26□□□□□ -1.25
USP48-211ENST00000526044 SOGA1O94964 1423 aa7.26□□□□□ -1.25
USP48-211ENST00000526044 J3QW42 95 aa7.25□□□□□ -1.25
USP48-211ENST00000526044 GHRHP01286 108 aa7.25□□□□□ -1.25
USP48-211ENST00000526044 PDE3BQ13370 1112 aa7.25□□□□□ -1.25
USP48-211ENST00000526044 NUDT8Q8WV74 236 aa7.25□□□□□ -1.25
USP48-211ENST00000526044 SPACA7Q96KW9 195 aa7.25□□□□□ -1.25
USP48-211ENST00000526044 JPH1Q9HDC5 661 aaPredicted RBP7.25□□□□□ -1.25
USP48-211ENST00000526044 CNTN3Q9P232 1028 aa7.25□□□□□ -1.25
USP48-211ENST00000526044 FGD5Q6ZNL6 1462 aa7.24□□□□□ -1.25
USP48-211ENST00000526044 TNFRSF21O75509 655 aa7.24□□□□□ -1.25
USP48-211ENST00000526044 EIF2AK2P19525 551 aaKnown RBP7.24□□□□□ -1.25
USP48-211ENST00000526044 CES1P23141 567 aa7.24□□□□□ -1.25
USP48-211ENST00000526044 LCE3BQ5TA77 95 aa7.24□□□□□ -1.25
USP48-211ENST00000526044 C8orf86Q6ZUL3 223 aa7.24□□□□□ -1.25
USP48-211ENST00000526044 C1orf127Q8N9H9 656 aa7.24□□□□□ -1.25
USP48-211ENST00000526044 TTC9Q92623 222 aa7.24□□□□□ -1.25
USP48-211ENST00000526044 LPIN3Q9BQK8 851 aa7.24□□□□□ -1.25
USP48-211ENST00000526044 POLA1P09884 1462 aaPredicted RBP7.24□□□□□ -1.25
USP48-211ENST00000526044 PHACTR2O75167 634 aa7.23□□□□□ -1.25
USP48-211ENST00000526044 KIF4AO95239 1232 aa7.23□□□□□ -1.25
USP48-211ENST00000526044 CYP2E1P05181 493 aaPredicted RBP7.23□□□□□ -1.25
USP48-211ENST00000526044 PRSS36Q5K4E3 855 aa7.23□□□□□ -1.25
USP48-211ENST00000526044 COL13A1Q5TAT6 717 aaPredicted RBP7.23□□□□□ -1.25
USP48-211ENST00000526044 TMC1Q8TDI8 760 aa7.23□□□□□ -1.25
USP48-211ENST00000526044 SNX29Q8TEQ0 813 aa7.23□□□□□ -1.25
USP48-211ENST00000526044 PLD4Q96BZ4 506 aa7.23□□□□□ -1.25
USP48-211ENST00000526044 SMG9Q9H0W8 520 aaKnown RBP7.23□□□□□ -1.25
USP48-211ENST00000526044 RAD54L2Q9Y4B4 1467 aa7.23□□□□□ -1.25
USP48-211ENST00000526044 BTBD11A6QL63 1104 aa7.22□□□□□ -1.25
USP48-211ENST00000526044 NEFLP07196 543 aa7.22□□□□□ -1.25
USP48-211ENST00000526044 AFF1P51825 1210 aaKnown RBP7.22□□□□□ -1.25
USP48-211ENST00000526044 COL9A3Q14050 684 aaPredicted RBP7.22□□□□□ -1.25
USP48-211ENST00000526044 FOXD4L6Q3SYB3 417 aaPredicted RBP7.22□□□□□ -1.25
USP48-211ENST00000526044 FOXD4L3Q6VB84 417 aaPredicted RBP7.22□□□□□ -1.25
USP48-211ENST00000526044 NCAPG2Q86XI2 1143 aa7.22□□□□□ -1.25
USP48-211ENST00000526044 FAM129BQ96TA1 746 aa7.22□□□□□ -1.25
USP48-211ENST00000526044 RBCK1Q9BYM8 510 aa7.22□□□□□ -1.25
USP48-211ENST00000526044 DCTN4Q9UJW0 460 aa7.22□□□□□ -1.25
USP48-211ENST00000526044 CUX2O14529 1486 aa7.22□□□□□ -1.25
USP48-211ENST00000526044 NID1P14543 1247 aa7.21□□□□□ -1.26
USP48-211ENST00000526044 HOMEZQ8IX15 550 aa7.21□□□□□ -1.26
USP48-211ENST00000526044 CHRDQ9H2X0 955 aa7.21□□□□□ -1.26
USP48-211ENST00000526044 ZFYVE28Q9HCC9 887 aa7.21□□□□□ -1.26
USP48-211ENST00000526044 KANSL3Q9P2N6 904 aa7.21□□□□□ -1.26
USP48-211ENST00000526044 SALL4Q9UJQ4 1053 aa7.21□□□□□ -1.26
USP48-211ENST00000526044 FOXD3Q9UJU5 478 aaPredicted RBP7.21□□□□□ -1.26
USP48-211ENST00000526044 IFT140Q96RY7 1462 aa7.21□□□□□ -1.26
USP48-211ENST00000526044 C9orf172C9J069 976 aa7.2□□□□□ -1.26
USP48-211ENST00000526044 FAM229AH3BQW9 127 aa7.2□□□□□ -1.26
USP48-211ENST00000526044 TRAPPC3LQ5T215 181 aa7.2□□□□□ -1.26
USP48-211ENST00000526044 CEP120Q8N960 986 aa7.2□□□□□ -1.26
USP48-211ENST00000526044 DMRTB1Q96MA1 342 aa7.2□□□□□ -1.26
USP48-211ENST00000526044 EREGO14944 169 aa7.19□□□□□ -1.26
USP48-211ENST00000526044 SMNDC1O75940 238 aaKnown RBP eCLIP7.19□□□□□ -1.26
USP48-211ENST00000526044 MAPK1P28482 360 aa7.19□□□□□ -1.26
USP48-211ENST00000526044 LRP8Q14114 963 aa7.19□□□□□ -1.26
USP48-211ENST00000526044 GRIK5Q16478 980 aa7.19□□□□□ -1.26
USP48-211ENST00000526044 FAM9AQ8IZU1 332 aaPredicted RBP7.19□□□□□ -1.26
USP48-211ENST00000526044 PBX4Q9BYU1 374 aa7.19□□□□□ -1.26
USP48-211ENST00000526044 AMOTL2Q9Y2J4 779 aa7.19□□□□□ -1.26
USP48-211ENST00000526044 TARBP1Q13395 1621 aaKnown RBP7.19□□□□□ -1.26
USP48-211ENST00000526044 H2AFB1P0C5Y9 115 aa7.18□□□□□ -1.26
USP48-211ENST00000526044 H2AFB2P0C5Z0 115 aa7.18□□□□□ -1.26
USP48-211ENST00000526044 EDN3P14138 238 aa7.18□□□□□ -1.26
USP48-211ENST00000526044 CEP135Q66GS9 1140 aa7.18□□□□□ -1.26
USP48-211ENST00000526044 MSL1Q68DK7 614 aa7.18□□□□□ -1.26
USP48-211ENST00000526044 CACTIN-AS1Q8N1I8 211 aa7.18□□□□□ -1.26
USP48-211ENST00000526044 KRTAP4-12Q9BQ66 201 aa7.18□□□□□ -1.26
USP48-211ENST00000526044 NIF3L1Q9GZT8 377 aa7.18□□□□□ -1.26
USP48-211ENST00000526044 RASSF4Q9H2L5 321 aa7.18□□□□□ -1.26
USP48-211ENST00000526044 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.18□□□□□ -1.26
USP48-211ENST00000526044 TDRD9Q8NDG6 1382 aaKnown RBP7.18□□□□□ -1.26
USP48-211ENST00000526044 ABCA10Q8WWZ4 1543 aa7.17□□□□□ -1.26
USP48-211ENST00000526044 GPR182O15218 404 aa7.17□□□□□ -1.26
USP48-211ENST00000526044 IGHA2P01877 340 aa7.17□□□□□ -1.26
USP48-211ENST00000526044 ATP11AP98196 1134 aa7.17□□□□□ -1.26
USP48-211ENST00000526044 GRIK4Q16099 956 aa7.17□□□□□ -1.26
USP48-211ENST00000526044 GDF6Q6KF10 455 aaPredicted RBP7.17□□□□□ -1.26
USP48-211ENST00000526044 TMC7Q7Z402 723 aa7.17□□□□□ -1.26
USP48-211ENST00000526044 WFDC8Q8IUA0 241 aa7.17□□□□□ -1.26
USP48-211ENST00000526044 DMRTC2Q8IXT2 367 aaPredicted RBP7.17□□□□□ -1.26
USP48-211ENST00000526044 ALKBH8Q96BT7 664 aaKnown RBP7.17□□□□□ -1.26
USP48-211ENST00000526044 KIF27Q86VH2 1401 aa7.17□□□□□ -1.26
USP48-211ENST00000526044 AQRO60306 1485 aaKnown RBP eCLIP7.17□□□□□ -1.262e-7■■□□□ 12
USP48-211ENST00000526044 CPNE3O75131 537 aaKnown RBP7.16□□□□□ -1.26
USP48-211ENST00000526044 ILDR2Q71H61 639 aa7.16□□□□□ -1.26
USP48-211ENST00000526044 SND1Q7KZF4 910 aaKnown RBP eCLIP7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms