RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 MCF2L2Q86YR7 1114 aa11.23□□□□□ -0.61
LSM1-202ENST00000520286 KIAA0825Q8IV33 1275 aa11.23□□□□□ -0.61
LSM1-202ENST00000520286 SPACA7Q96KW9 195 aa11.23□□□□□ -0.61
LSM1-202ENST00000520286 TMEM74Q96NL1 305 aa11.23□□□□□ -0.61
LSM1-202ENST00000520286 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.23□□□□□ -0.61
LSM1-202ENST00000520286 DACH1Q9UI36 760 aa11.23□□□□□ -0.61
LSM1-202ENST00000520286 FGRP09769 529 aa11.22□□□□□ -0.61
LSM1-202ENST00000520286 RLBP1P12271 317 aa11.22□□□□□ -0.61
LSM1-202ENST00000520286 GRIA4P48058 902 aa11.22□□□□□ -0.61
LSM1-202ENST00000520286 NRLP54845 237 aa11.22□□□□□ -0.61
LSM1-202ENST00000520286 TPTE2Q6XPS3 522 aa11.22□□□□□ -0.61
LSM1-202ENST00000520286 GTPBP3Q969Y2 492 aaKnown RBP11.22□□□□□ -0.61
LSM1-202ENST00000520286 LNPKQ9C0E8 428 aa11.22□□□□□ -0.61
LSM1-202ENST00000520286 ADAMTS1Q9UHI8 967 aa11.22□□□□□ -0.61
LSM1-202ENST00000520286 SMARCA5O60264 1052 aaPredicted RBP11.21□□□□□ -0.61
LSM1-202ENST00000520286 FGFR3P22607 806 aa11.21□□□□□ -0.61
LSM1-202ENST00000520286 ITGA6P23229 1130 aa11.21□□□□□ -0.61
LSM1-202ENST00000520286 MAP3K11Q16584 847 aa11.21□□□□□ -0.61
LSM1-202ENST00000520286 PHF24Q9UPV7 400 aa11.21□□□□□ -0.61
LSM1-202ENST00000520286 ITPKAP23677 461 aa11.2□□□□□ -0.62
LSM1-202ENST00000520286 EIF4A3P38919 411 aaKnown RBP11.2□□□□□ -0.62
LSM1-202ENST00000520286 FAM182BQ5T319 152 aa11.2□□□□□ -0.62
LSM1-202ENST00000520286 TMEM102Q8N9M5 508 aaPredicted RBP11.2□□□□□ -0.62
LSM1-202ENST00000520286 RASGRP4Q8TDF6 673 aa11.2□□□□□ -0.62
LSM1-202ENST00000520286 KIFC2Q96AC6 838 aa11.2□□□□□ -0.62
LSM1-202ENST00000520286 HHIPQ96QV1 700 aa11.2□□□□□ -0.62
LSM1-202ENST00000520286 CEP44Q9C0F1 390 aa11.2□□□□□ -0.62
LSM1-202ENST00000520286 BHLHE41Q9C0J9 482 aaPredicted RBP11.2□□□□□ -0.62
LSM1-202ENST00000520286 SENP2Q9HC62 589 aa11.2□□□□□ -0.62
LSM1-202ENST00000520286 LOC102724428A0A0B4J2F2 783 aa11.19□□□□□ -0.62
LSM1-202ENST00000520286 METTL12A8MUP2 240 aa11.19□□□□□ -0.62
LSM1-202ENST00000520286 SIK1P57059 783 aa11.19□□□□□ -0.62
LSM1-202ENST00000520286 RBL2Q08999 1139 aa11.19□□□□□ -0.62
LSM1-202ENST00000520286 SPRED3Q2MJR0 410 aa11.19□□□□□ -0.62
LSM1-202ENST00000520286 PMFBP1Q8TBY8 1022 aa11.19□□□□□ -0.62
LSM1-202ENST00000520286 SPATA32Q96LK8 384 aa11.19□□□□□ -0.62
LSM1-202ENST00000520286 HIRIP3Q9BW71 556 aaPredicted RBP11.19□□□□□ -0.62
LSM1-202ENST00000520286 A0A096LPE4 126 aa11.18□□□□□ -0.62
LSM1-202ENST00000520286 A0A1W2PPZ6 126 aa11.18□□□□□ -0.62
LSM1-202ENST00000520286 NFKBIEO00221 500 aa11.18□□□□□ -0.62
LSM1-202ENST00000520286 STK10O94804 968 aaKnown RBP11.18□□□□□ -0.62
LSM1-202ENST00000520286 GPLD1P80108 840 aa11.18□□□□□ -0.62
LSM1-202ENST00000520286 MLLT1Q03111 559 aaPredicted RBP11.18□□□□□ -0.62
LSM1-202ENST00000520286 TRPM4Q8TD43 1214 aa11.18□□□□□ -0.62
LSM1-202ENST00000520286 NXPE3Q969Y0 559 aa11.18□□□□□ -0.62
LSM1-202ENST00000520286 ZBTB42B2RXF5 422 aa11.17□□□□□ -0.62
LSM1-202ENST00000520286 J3QW42 95 aa11.17□□□□□ -0.62
LSM1-202ENST00000520286 PDE2AO00408 941 aaPredicted RBP11.17□□□□□ -0.62
LSM1-202ENST00000520286 CELA3AP09093 270 aa11.17□□□□□ -0.62
LSM1-202ENST00000520286 LIG3P49916 1009 aa11.17□□□□□ -0.62
LSM1-202ENST00000520286 HFE2Q6ZVN8 426 aa11.17□□□□□ -0.62
LSM1-202ENST00000520286 ASAP3Q8TDY4 903 aa11.17□□□□□ -0.62
LSM1-202ENST00000520286 ZNF296Q8WUU4 475 aaPredicted RBP11.17□□□□□ -0.62
LSM1-202ENST00000520286 PBX4Q9BYU1 374 aa11.17□□□□□ -0.62
LSM1-202ENST00000520286 RASSF4Q9H2L5 321 aa11.17□□□□□ -0.62
LSM1-202ENST00000520286 IGFLR1Q9H665 355 aa11.17□□□□□ -0.62
LSM1-202ENST00000520286 PRR12Q9ULL5 1215 aa11.17□□□□□ -0.62
LSM1-202ENST00000520286 LAPTM4AQ15012 233 aa11.16□□□□□ -0.62
LSM1-202ENST00000520286 SOGA3Q5TF21 947 aa11.16□□□□□ -0.62
LSM1-202ENST00000520286 PHC3Q8NDX5 983 aa11.16□□□□□ -0.62
LSM1-202ENST00000520286 SEC16BQ96JE7 1060 aa11.16□□□□□ -0.62
LSM1-202ENST00000520286 RHOVQ96L33 236 aa11.16□□□□□ -0.62
LSM1-202ENST00000520286 TLR6Q9Y2C9 796 aa11.16□□□□□ -0.62
LSM1-202ENST00000520286 ATP11AP98196 1134 aa11.15□□□□□ -0.62
LSM1-202ENST00000520286 CTBSQ01459 385 aa11.15□□□□□ -0.62
LSM1-202ENST00000520286 CCDC144BQ3MJ40 725 aa11.15□□□□□ -0.62
LSM1-202ENST00000520286 GIMAP6Q6P9H5 292 aa11.15□□□□□ -0.62
LSM1-202ENST00000520286 FOXR1Q6PIV2 292 aa11.15□□□□□ -0.62
LSM1-202ENST00000520286 EAF1Q96JC9 268 aaPredicted RBP11.15□□□□□ -0.62
LSM1-202ENST00000520286 NECAB3Q96P71 396 aaPredicted RBP11.15□□□□□ -0.62
LSM1-202ENST00000520286 TRERF1Q96PN7 1200 aa11.15□□□□□ -0.62
LSM1-202ENST00000520286 SEC31BQ9NQW1 1179 aa11.15□□□□□ -0.62
LSM1-202ENST00000520286 ENC1O14682 589 aa11.14□□□□□ -0.63
LSM1-202ENST00000520286 GHRHP01286 108 aa11.14□□□□□ -0.63
LSM1-202ENST00000520286 FAM160A1Q05DH4 1040 aa11.14□□□□□ -0.63
LSM1-202ENST00000520286 TBC1D8BQ0IIM8 1120 aa11.14□□□□□ -0.63
LSM1-202ENST00000520286 PCSK7Q16549 785 aa11.14□□□□□ -0.63
LSM1-202ENST00000520286 RPS26P11Q5JNZ5 115 aaPredicted RBP11.14□□□□□ -0.63
LSM1-202ENST00000520286 FBXL19Q6PCT2 694 aa11.14□□□□□ -0.63
LSM1-202ENST00000520286 NOP9Q86U38 636 aaKnown RBP11.14□□□□□ -0.63
LSM1-202ENST00000520286 TRIM47Q96LD4 638 aa11.14□□□□□ -0.63
LSM1-202ENST00000520286 UBE2OQ9C0C9 1292 aaKnown RBP11.14□□□□□ -0.63
LSM1-202ENST00000520286 RBSNQ9H1K0 784 aa11.14□□□□□ -0.63
LSM1-202ENST00000520286 ZNF576Q9H609 170 aa11.14□□□□□ -0.63
LSM1-202ENST00000520286 KCNQ5Q9NR82 932 aa11.14□□□□□ -0.63
LSM1-202ENST00000520286 DNAJB12Q9NXW2 375 aaKnown RBP11.14□□□□□ -0.63
LSM1-202ENST00000520286 SUPT16HQ9Y5B9 1047 aaKnown RBP11.14□□□□□ -0.63
LSM1-202ENST00000520286 PF4P02776 101 aa11.13□□□□□ -0.63
LSM1-202ENST00000520286 CANXP27824 592 aaKnown RBP11.13□□□□□ -0.63
LSM1-202ENST00000520286 TTBK2Q6IQ55 1244 aa11.13□□□□□ -0.63
LSM1-202ENST00000520286 SYT9Q86SS6 491 aa11.13□□□□□ -0.63
LSM1-202ENST00000520286 NT5C1AQ9BXI3 368 aa11.13□□□□□ -0.63
LSM1-202ENST00000520286 GPN3Q9UHW5 284 aaPredicted RBP11.13□□□□□ -0.63
LSM1-202ENST00000520286 GPR25O00155 361 aa11.12□□□□□ -0.63
LSM1-202ENST00000520286 SSBP05455 408 aaKnown RBP eCLIP11.12□□□□□ -0.63
LSM1-202ENST00000520286 NASPP49321 788 aaPredicted RBP11.12□□□□□ -0.63
LSM1-202ENST00000520286 FAAP100Q0VG06 881 aa11.12□□□□□ -0.63
LSM1-202ENST00000520286 CAMK2GQ13555 558 aaPredicted RBP11.12□□□□□ -0.63
LSM1-202ENST00000520286 SNAP47Q5SQN1 464 aa11.12□□□□□ -0.63
LSM1-202ENST00000520286 EFR3BQ9Y2G0 817 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms