RNA–Protein interactions for RNA: ENST00000517824.5

SPIDR-204, Transcript of scaffold protein involved in DNA repair, human

TSL 5

Gene SPIDR, Length 849 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-204	ENST00000517824	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	12.85	□□□□□ -0.35	1e-6	■■□□□ 13.8
SPIDR-204	ENST00000517824	HELLS	Q9NRZ9	838 aa		12.85	□□□□□ -0.35
SPIDR-204	ENST00000517824	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	12.85	□□□□□ -0.35
SPIDR-204	ENST00000517824	LY75	O60449	1722 aa		12.85	□□□□□ -0.35
SPIDR-204	ENST00000517824	SLC27A2	O14975	620 aa		12.84	□□□□□ -0.35
SPIDR-204	ENST00000517824	ZFY	P08048	801 aa	Predicted RBP	12.84	□□□□□ -0.35
SPIDR-204	ENST00000517824	ITGA6	P23229	1130 aa		12.84	□□□□□ -0.35
SPIDR-204	ENST00000517824	KCNQ4	P56696	695 aa		12.84	□□□□□ -0.35
SPIDR-204	ENST00000517824	SLC27A3	Q5K4L6	730 aa		12.84	□□□□□ -0.35
SPIDR-204	ENST00000517824	LDHAL6A	Q6ZMR3	332 aa		12.84	□□□□□ -0.35
SPIDR-204	ENST00000517824	RUFY3	Q7L099	469 aa		12.84	□□□□□ -0.35
SPIDR-204	ENST00000517824	MAP4K1	Q92918	833 aa		12.84	□□□□□ -0.35
SPIDR-204	ENST00000517824	UTP14A	Q9BVJ6	771 aa	Known RBP	12.84	□□□□□ -0.35
SPIDR-204	ENST00000517824	SNRK	Q9NRH2	765 aa		12.84	□□□□□ -0.35
SPIDR-204	ENST00000517824	ISY1	Q9ULR0	285 aa	Known RBP	12.84	□□□□□ -0.35
SPIDR-204	ENST00000517824	DDX49	Q9Y6V7	483 aa	Known RBP	12.84	□□□□□ -0.35
SPIDR-204	ENST00000517824	COL24A1	Q17RW2	1714 aa		12.84	□□□□□ -0.35
SPIDR-204	ENST00000517824	RPAP1	Q9BWH6	1393 aa	Predicted RBP	12.83	□□□□□ -0.36
SPIDR-204	ENST00000517824	TIMM10	P62072	90 aa		12.83	□□□□□ -0.36
SPIDR-204	ENST00000517824	FKBP4	Q02790	459 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
SPIDR-204	ENST00000517824	ZSCAN25	Q6NSZ9	544 aa		12.83	□□□□□ -0.36
SPIDR-204	ENST00000517824	CLEC17A	Q6ZS10	378 aa		12.83	□□□□□ -0.36
SPIDR-204	ENST00000517824	RASEF	Q8IZ41	740 aa		12.83	□□□□□ -0.36
SPIDR-204	ENST00000517824	EDC3	Q96F86	508 aa	Known RBP	12.83	□□□□□ -0.36
SPIDR-204	ENST00000517824	ATP6V1D	Q9Y5K8	247 aa		12.83	□□□□□ -0.36
SPIDR-204	ENST00000517824	PNPLA7	Q6ZV29	1317 aa		12.83	□□□□□ -0.36
SPIDR-204	ENST00000517824	CCDC88A	Q3V6T2	1871 aa		12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	C4A	P0C0L4	1744 aa		12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	C4B	P0C0L5	1744 aa		12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	RNF113A	O15541	343 aa	Known RBP	12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	CSF1R	P07333	972 aa		12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	SLC5A1	P13866	664 aa		12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	NECTIN1	Q15223	517 aa		12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	TTF1	Q15361	905 aa	Predicted RBP	12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	WASHC4	Q2M389	1173 aa		12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	CCDC152	Q4G0S7	254 aa		12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	FOXD4L5	Q5VV16	416 aa	Predicted RBP	12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	KCNB2	Q92953	911 aa		12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	XAGE2	Q96GT9	111 aa		12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	TTC14	Q96N46	770 aa		12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	SLC4A9	Q96Q91	983 aa		12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	MPHOSPH8	Q99549	860 aa		12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	PUS3	Q9BZE2	481 aa	Known RBP	12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	GREM2	Q9H772	168 aa		12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	ZSWIM6	Q9HCJ5	1215 aa		12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	MROH5	Q6ZUA9	1318 aa		12.82	□□□□□ -0.36
SPIDR-204	ENST00000517824	FAM177B	A6PVY3	158 aa		12.81	□□□□□ -0.36
SPIDR-204	ENST00000517824	MBD3	O95983	291 aa		12.81	□□□□□ -0.36
SPIDR-204	ENST00000517824	CYP2E1	P05181	493 aa	Predicted RBP	12.81	□□□□□ -0.36
SPIDR-204	ENST00000517824	HMGB1	P09429	215 aa	Known RBP	12.81	□□□□□ -0.36
SPIDR-204	ENST00000517824	UQCRFS1P1	P0C7P4	283 aa		12.81	□□□□□ -0.36
SPIDR-204	ENST00000517824	ATXN8OS	P0DMR3	200 aa		12.81	□□□□□ -0.36
SPIDR-204	ENST00000517824	PDIA4	P13667	645 aa	Known RBP	12.81	□□□□□ -0.36
SPIDR-204	ENST00000517824	IGHMBP2	P38935	993 aa	Known RBP	12.81	□□□□□ -0.36
SPIDR-204	ENST00000517824	EIF5	P55010	431 aa	Known RBP	12.81	□□□□□ -0.36
SPIDR-204	ENST00000517824	CSPP1	Q1MSJ5	1256 aa		12.81	□□□□□ -0.36
SPIDR-204	ENST00000517824	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.81	□□□□□ -0.36
SPIDR-204	ENST00000517824	ZNF34	Q8IZ26	560 aa		12.81	□□□□□ -0.36
SPIDR-204	ENST00000517824	TTLL11	Q8NHH1	800 aa		12.81	□□□□□ -0.36
SPIDR-204	ENST00000517824	SLC16A10	Q8TF71	515 aa		12.81	□□□□□ -0.36
SPIDR-204	ENST00000517824	SYAP1	Q96A49	352 aa	Predicted RBP	12.81	□□□□□ -0.36
SPIDR-204	ENST00000517824	NIP7	Q9Y221	180 aa	Known RBP eCLIP	12.81	□□□□□ -0.36
SPIDR-204	ENST00000517824	NDUFB9	Q9Y6M9	179 aa		12.81	□□□□□ -0.36
SPIDR-204	ENST00000517824	MAST2	Q6P0Q8	1798 aa		12.8	□□□□□ -0.36
SPIDR-204	ENST00000517824	TAF5L	O75529	589 aa		12.8	□□□□□ -0.36
SPIDR-204	ENST00000517824	RPS6KB1	P23443	525 aa		12.8	□□□□□ -0.36
SPIDR-204	ENST00000517824	PUM3	Q15397	648 aa	Known RBP	12.8	□□□□□ -0.36
SPIDR-204	ENST00000517824	ZNF589	Q86UQ0	364 aa	Predicted RBP	12.8	□□□□□ -0.36
SPIDR-204	ENST00000517824	CCDC83	Q8IWF9	413 aa		12.8	□□□□□ -0.36
SPIDR-204	ENST00000517824	CHMP4C	Q96CF2	233 aa		12.8	□□□□□ -0.36
SPIDR-204	ENST00000517824	DSCC1	Q9BVC3	393 aa		12.8	□□□□□ -0.36
SPIDR-204	ENST00000517824	TFCP2L1	Q9NZI6	479 aa		12.8	□□□□□ -0.36
SPIDR-204	ENST00000517824	CTNNA3	Q9UI47	895 aa		12.8	□□□□□ -0.36
SPIDR-204	ENST00000517824	UBN2	Q6ZU65	1347 aa		12.8	□□□□□ -0.36
SPIDR-204	ENST00000517824	CPA1	P15085	419 aa		12.79	□□□□□ -0.36
SPIDR-204	ENST00000517824	PDC	P20941	246 aa		12.79	□□□□□ -0.36
SPIDR-204	ENST00000517824	GTF2E1	P29083	439 aa	Predicted RBP	12.79	□□□□□ -0.36
SPIDR-204	ENST00000517824	ADORA1	P30542	326 aa		12.79	□□□□□ -0.36
SPIDR-204	ENST00000517824	KLHL40	Q2TBA0	621 aa		12.79	□□□□□ -0.36
SPIDR-204	ENST00000517824	ZMYM1	Q5SVZ6	1142 aa		12.79	□□□□□ -0.36
SPIDR-204	ENST00000517824	INTS5	Q6P9B9	1019 aa	Known RBP	12.79	□□□□□ -0.36
SPIDR-204	ENST00000517824	CCDC129	Q6ZRS4	1044 aa		12.79	□□□□□ -0.36
SPIDR-204	ENST00000517824	NEK1	Q96PY6	1258 aa		12.79	□□□□□ -0.36
SPIDR-204	ENST00000517824	CDC5L	Q99459	802 aa	Known RBP	12.79	□□□□□ -0.36
SPIDR-204	ENST00000517824	TAF1	P21675	1872 aa		12.78	□□□□□ -0.36
SPIDR-204	ENST00000517824	BRD1	O95696	1058 aa		12.78	□□□□□ -0.36
SPIDR-204	ENST00000517824	POLD1	P28340	1107 aa		12.78	□□□□□ -0.36
SPIDR-204	ENST00000517824	ITPK1	Q13572	414 aa		12.78	□□□□□ -0.36
SPIDR-204	ENST00000517824	PKP1	Q13835	747 aa		12.78	□□□□□ -0.36
SPIDR-204	ENST00000517824	GPR162	Q16538	588 aa		12.78	□□□□□ -0.36
SPIDR-204	ENST00000517824	ADCK5	Q3MIX3	580 aa		12.78	□□□□□ -0.36
SPIDR-204	ENST00000517824	NLGN2	Q8NFZ4	835 aa		12.78	□□□□□ -0.36
SPIDR-204	ENST00000517824	ANP32B	Q92688	251 aa	Known RBP	12.78	□□□□□ -0.36
SPIDR-204	ENST00000517824	KIF3A	Q9Y496	699 aa		12.78	□□□□□ -0.36
SPIDR-204	ENST00000517824	QSER1	Q2KHR3	1735 aa		12.78	□□□□□ -0.36
SPIDR-204	ENST00000517824	MAST3	O60307	1309 aa		12.78	□□□□□ -0.36
SPIDR-204	ENST00000517824	CNTNAP4	Q9C0A0	1308 aa		12.78	□□□□□ -0.36
SPIDR-204	ENST00000517824	VPS37C	A5D8V6	355 aa	Predicted RBP	12.77	□□□□□ -0.37
SPIDR-204	ENST00000517824	NPHP1	O15259	732 aa		12.77	□□□□□ -0.37

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