RNA–Protein interactions for RNA: ENST00000517354.5

CPNE3-201, Transcript of copine 3, humanhuman

TSL 4

Gene CPNE3, Length 566 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-201ENST00000517354 RGS22Q8NE09 1264 aa9.86□□□□□ -0.83
CPNE3-201ENST00000517354 ZKSCAN3Q9BRR0 538 aa9.86□□□□□ -0.83
CPNE3-201ENST00000517354 LIN7BQ9HAP6 207 aa9.86□□□□□ -0.83
CPNE3-201ENST00000517354 LATS2Q9NRM7 1088 aa9.86□□□□□ -0.83
CPNE3-201ENST00000517354 ADAMTS8Q9UP79 889 aa9.86□□□□□ -0.83
CPNE3-201ENST00000517354 PRPF40AO75400 957 aaKnown RBP9.85□□□□□ -0.83
CPNE3-201ENST00000517354 PTPRAP18433 802 aa9.85□□□□□ -0.83
CPNE3-201ENST00000517354 KIAA0319Q5VV43 1072 aa9.85□□□□□ -0.83
CPNE3-201ENST00000517354 C20orf204Q6ZNR8 217 aa9.85□□□□□ -0.83
CPNE3-201ENST00000517354 CACTIN-AS1Q8N1I8 211 aa9.85□□□□□ -0.83
CPNE3-201ENST00000517354 ASAP3Q8TDY4 903 aa9.85□□□□□ -0.83
CPNE3-201ENST00000517354 LACRTQ9GZZ8 138 aa9.85□□□□□ -0.83
CPNE3-201ENST00000517354 MKL2Q9ULH7 1088 aa9.85□□□□□ -0.83
CPNE3-201ENST00000517354 SPG7Q9UQ90 795 aa9.85□□□□□ -0.83
CPNE3-201ENST00000517354 ACPPP15309 386 aa9.84□□□□□ -0.83
CPNE3-201ENST00000517354 TRAPPC3LQ5T215 181 aa9.84□□□□□ -0.83
CPNE3-201ENST00000517354 C8orf86Q6ZUL3 223 aa9.84□□□□□ -0.83
CPNE3-201ENST00000517354 WFDC8Q8IUA0 241 aa9.84□□□□□ -0.83
CPNE3-201ENST00000517354 TMEM102Q8N9M5 508 aaPredicted RBP9.84□□□□□ -0.83
CPNE3-201ENST00000517354 GIPC2Q8TF65 315 aa9.84□□□□□ -0.83
CPNE3-201ENST00000517354 FRMD6Q96NE9 622 aa9.84□□□□□ -0.83
CPNE3-201ENST00000517354 TRAK1Q9UPV9 953 aa9.84□□□□□ -0.83
CPNE3-201ENST00000517354 CDC27P30260 824 aa9.83□□□□□ -0.84
CPNE3-201ENST00000517354 IRS1P35568 1242 aa9.83□□□□□ -0.84
CPNE3-201ENST00000517354 ITGAEP38570 1179 aa9.83□□□□□ -0.84
CPNE3-201ENST00000517354 CABP4P57796 275 aa9.83□□□□□ -0.84
CPNE3-201ENST00000517354 IL22RA1Q8N6P7 574 aa9.83□□□□□ -0.84
CPNE3-201ENST00000517354 NXPE3Q969Y0 559 aa9.83□□□□□ -0.84
CPNE3-201ENST00000517354 SCARF2Q96GP6 870 aaPredicted RBP9.83□□□□□ -0.84
CPNE3-201ENST00000517354 POP1Q99575 1024 aaKnown RBP9.83□□□□□ -0.84
CPNE3-201ENST00000517354 TRIM33Q9UPN9 1127 aa9.83□□□□□ -0.84
CPNE3-201ENST00000517354 SPDYE3A6NKU9 549 aa9.82□□□□□ -0.84
CPNE3-201ENST00000517354 GIPC1O14908 333 aa9.82□□□□□ -0.84
CPNE3-201ENST00000517354 AFF1P51825 1210 aaKnown RBP9.82□□□□□ -0.84
CPNE3-201ENST00000517354 PEAR1Q5VY43 1037 aaPredicted RBP9.82□□□□□ -0.84
CPNE3-201ENST00000517354 SETDB2Q96T68 719 aa9.82□□□□□ -0.84
CPNE3-201ENST00000517354 DUSP9Q99956 384 aaKnown RBP9.82□□□□□ -0.84
CPNE3-201ENST00000517354 SUV39H2Q9H5I1 410 aa9.82□□□□□ -0.84
CPNE3-201ENST00000517354 PRDM6Q9NQX0 595 aa9.82□□□□□ -0.84
CPNE3-201ENST00000517354 LORP23490 312 aaPredicted RBP9.81□□□□□ -0.84
CPNE3-201ENST00000517354 PSMD2Q13200 908 aa9.81□□□□□ -0.84
CPNE3-201ENST00000517354 FAM117BQ6P1L5 589 aa9.81□□□□□ -0.84
CPNE3-201ENST00000517354 BCO2Q9BYV7 579 aa9.81□□□□□ -0.84
CPNE3-201ENST00000517354 MUC3BQ9H195 1237 aa9.81□□□□□ -0.84
CPNE3-201ENST00000517354 GNB5O14775 395 aa9.8□□□□□ -0.84
CPNE3-201ENST00000517354 DGKGP49619 791 aa9.8□□□□□ -0.84
CPNE3-201ENST00000517354 SNRPNP63162 240 aaKnown RBP9.8□□□□□ -0.84
CPNE3-201ENST00000517354 MSL1Q68DK7 614 aa9.8□□□□□ -0.84
CPNE3-201ENST00000517354 PI16Q6UXB8 463 aa9.8□□□□□ -0.84
CPNE3-201ENST00000517354 DMRTC2Q8IXT2 367 aaPredicted RBP9.8□□□□□ -0.84
CPNE3-201ENST00000517354 FOXD4L4Q8WXT5 416 aaPredicted RBP9.8□□□□□ -0.84
CPNE3-201ENST00000517354 MRS2Q9HD23 443 aa9.8□□□□□ -0.84
CPNE3-201ENST00000517354 PARP2Q9UGN5 583 aa9.8□□□□□ -0.84
CPNE3-201ENST00000517354 PPME1Q9Y570 386 aa9.8□□□□□ -0.84
CPNE3-201ENST00000517354 CNTNAP5Q8WYK1 1306 aa9.8□□□□□ -0.84
CPNE3-201ENST00000517354 NFKBIEO00221 500 aa9.79□□□□□ -0.84
CPNE3-201ENST00000517354 CDC25BP30305 580 aa9.79□□□□□ -0.84
CPNE3-201ENST00000517354 FBXO33Q7Z6M2 555 aa9.79□□□□□ -0.84
CPNE3-201ENST00000517354 BSNDQ8WZ55 320 aa9.79□□□□□ -0.84
CPNE3-201ENST00000517354 HHIPQ96QV1 700 aa9.79□□□□□ -0.84
CPNE3-201ENST00000517354 PLVAPQ9BX97 442 aa9.79□□□□□ -0.84
CPNE3-201ENST00000517354 GNA15P30679 374 aa9.78□□□□□ -0.84
CPNE3-201ENST00000517354 RAC1P63000 192 aa9.78□□□□□ -0.84
CPNE3-201ENST00000517354 TRIM28Q13263 835 aaKnown RBP9.78□□□□□ -0.84
CPNE3-201ENST00000517354 GRM2Q14416 872 aa9.78□□□□□ -0.84
CPNE3-201ENST00000517354 NXPE4Q6UWF7 544 aa9.78□□□□□ -0.84
CPNE3-201ENST00000517354 DTHD1Q6ZMT9 781 aa9.78□□□□□ -0.84
CPNE3-201ENST00000517354 CCNJLQ8IV13 435 aa9.78□□□□□ -0.84
CPNE3-201ENST00000517354 ZFYVE1Q9HBF4 777 aa9.78□□□□□ -0.84
CPNE3-201ENST00000517354 SH2B1Q9NRF2 756 aaPredicted RBP9.78□□□□□ -0.84
CPNE3-201ENST00000517354 NOP53Q9NZM5 478 aaKnown RBP9.78□□□□□ -0.84
CPNE3-201ENST00000517354 STK17AQ9UEE5 414 aa9.78□□□□□ -0.84
CPNE3-201ENST00000517354 A0A096LPE4 126 aa9.77□□□□□ -0.85
CPNE3-201ENST00000517354 TMEM238LA0A1B0GVL6 79 aa9.77□□□□□ -0.85
CPNE3-201ENST00000517354 A0A1W2PPZ6 126 aa9.77□□□□□ -0.85
CPNE3-201ENST00000517354 EIF4BP23588 611 aaKnown RBP9.77□□□□□ -0.85
CPNE3-201ENST00000517354 TAGLNQ01995 201 aaKnown RBP9.77□□□□□ -0.85
CPNE3-201ENST00000517354 GRIK5Q16478 980 aa9.77□□□□□ -0.85
CPNE3-201ENST00000517354 LINC00114Q6XXX2 140 aa9.77□□□□□ -0.85
CPNE3-201ENST00000517354 SRCIN1Q9C0H9 1055 aa9.77□□□□□ -0.85
CPNE3-201ENST00000517354 BHLHE41Q9C0J9 482 aaPredicted RBP9.77□□□□□ -0.85
CPNE3-201ENST00000517354 ADAM19Q9H013 955 aa9.77□□□□□ -0.85
CPNE3-201ENST00000517354 ARL4DP49703 201 aa9.76□□□□□ -0.85
CPNE3-201ENST00000517354 FCGRTP55899 365 aa9.76□□□□□ -0.85
CPNE3-201ENST00000517354 SPRED3Q2MJR0 410 aa9.76□□□□□ -0.85
CPNE3-201ENST00000517354 PRRT3Q5FWE3 981 aa9.76□□□□□ -0.85
CPNE3-201ENST00000517354 TCF12Q99081 682 aa9.76□□□□□ -0.85
CPNE3-201ENST00000517354 AKAP2Q9Y2D5 859 aa9.76□□□□□ -0.85
CPNE3-201ENST00000517354 AK5Q9Y6K8 562 aa9.76□□□□□ -0.85
CPNE3-201ENST00000517354 METTL12A8MUP2 240 aa9.75□□□□□ -0.85
CPNE3-201ENST00000517354 LINC01387J3KSC0 135 aa9.75□□□□□ -0.85
CPNE3-201ENST00000517354 XRCC5P13010 732 aaKnown RBP9.75□□□□□ -0.85
CPNE3-201ENST00000517354 NID1P14543 1247 aa9.75□□□□□ -0.85
CPNE3-201ENST00000517354 RBM47A0AV96 593 aaKnown RBP9.74□□□□□ -0.85
CPNE3-201ENST00000517354 SORBS3O60504 671 aa9.74□□□□□ -0.85
CPNE3-201ENST00000517354 ZNF16P17020 682 aaPredicted RBP9.74□□□□□ -0.85
CPNE3-201ENST00000517354 GSTT1P30711 240 aa9.74□□□□□ -0.85
CPNE3-201ENST00000517354 GRIA4P48058 902 aa9.74□□□□□ -0.85
CPNE3-201ENST00000517354 IKBKEQ14164 716 aa9.74□□□□□ -0.85
CPNE3-201ENST00000517354 DDX54Q8TDD1 881 aaKnown RBP9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms