RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	COLQ	Q9Y215	455 aa	Predicted RBP	13.7	□□□□□ -0.22
CLDND1-231	ENST00000515620	IFNL1	Q8IU54	200 aa		13.69	□□□□□ -0.22
CLDND1-231	ENST00000515620	CD99L2	Q8TCZ2	262 aa		13.69	□□□□□ -0.22
CLDND1-231	ENST00000515620	ANGEL1	Q9UNK9	670 aa	Known RBP	13.69	□□□□□ -0.22
CLDND1-231	ENST00000515620	FZD1	Q9UP38	647 aa		13.69	□□□□□ -0.22
CLDND1-231	ENST00000515620	PTPN22	Q9Y2R2	807 aa		13.69	□□□□□ -0.22
CLDND1-231	ENST00000515620	MANSC4	A6NHS7	340 aa	Predicted RBP	13.68	□□□□□ -0.22
CLDND1-231	ENST00000515620	WTIP	A6NIX2	430 aa	Predicted RBP	13.68	□□□□□ -0.22
CLDND1-231	ENST00000515620	IGF2BP3	O00425	579 aa	Known RBP eCLIP	13.68	□□□□□ -0.22
CLDND1-231	ENST00000515620	CCDC152	Q4G0S7	254 aa		13.68	□□□□□ -0.22
CLDND1-231	ENST00000515620	LDLRAD1	Q5T700	205 aa		13.68	□□□□□ -0.22
CLDND1-231	ENST00000515620	APOBEC3F	Q8IUX4	373 aa	Known RBP	13.68	□□□□□ -0.22
CLDND1-231	ENST00000515620	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.68	□□□□□ -0.22
CLDND1-231	ENST00000515620	ARMC5	Q96C12	935 aa		13.68	□□□□□ -0.22
CLDND1-231	ENST00000515620	ERO1A	Q96HE7	468 aa		13.68	□□□□□ -0.22
CLDND1-231	ENST00000515620	KIAA0100	Q14667	2235 aa	Known RBP	13.67	□□□□□ -0.22
CLDND1-231	ENST00000515620	ZNF646	O15015	1829 aa	Predicted RBP	13.67	□□□□□ -0.22
CLDND1-231	ENST00000515620	HSP90B1	P14625	803 aa	Known RBP	13.67	□□□□□ -0.22
CLDND1-231	ENST00000515620	ATP2B4	P23634	1241 aa		13.67	□□□□□ -0.22
CLDND1-231	ENST00000515620	LMOD3	Q0VAK6	560 aa		13.67	□□□□□ -0.22
CLDND1-231	ENST00000515620	TRIM28	Q13263	835 aa	Known RBP	13.67	□□□□□ -0.22
CLDND1-231	ENST00000515620	DACT2	Q5SW24	774 aa		13.67	□□□□□ -0.22
CLDND1-231	ENST00000515620	ANKRD18A	Q8IVF6	992 aa		13.67	□□□□□ -0.22
CLDND1-231	ENST00000515620	CLMN	Q96JQ2	1002 aa		13.67	□□□□□ -0.22
CLDND1-231	ENST00000515620	DBF4	Q9UBU7	674 aa	Predicted RBP	13.67	□□□□□ -0.22
CLDND1-231	ENST00000515620	LAS1L	Q9Y4W2	734 aa	Known RBP	13.67	□□□□□ -0.22
CLDND1-231	ENST00000515620	MED23	Q9ULK4	1368 aa		13.67	□□□□□ -0.22
CLDND1-231	ENST00000515620	MYO3B	Q8WXR4	1341 aa		13.66	□□□□□ -0.22
CLDND1-231	ENST00000515620	INHBE	P58166	350 aa		13.66	□□□□□ -0.22
CLDND1-231	ENST00000515620	CRHR2	Q13324	411 aa		13.66	□□□□□ -0.22
CLDND1-231	ENST00000515620	JARID2	Q92833	1246 aa	Predicted RBP	13.66	□□□□□ -0.22
CLDND1-231	ENST00000515620	SLC10A4	Q96EP9	437 aa		13.66	□□□□□ -0.22
CLDND1-231	ENST00000515620	WNK4	Q96J92	1243 aa		13.66	□□□□□ -0.22
CLDND1-231	ENST00000515620	TMEM106C	Q9BVX2	250 aa		13.66	□□□□□ -0.22
CLDND1-231	ENST00000515620	EFCC1	Q9HA90	598 aa		13.66	□□□□□ -0.22
CLDND1-231	ENST00000515620	BRCA2	P51587	3418 aa		13.66	□□□□□ -0.22
CLDND1-231	ENST00000515620	SSC5D	A1L4H1	1573 aa		13.66	□□□□□ -0.22
CLDND1-231	ENST00000515620	CENPF	P49454	3210 aa		13.66	□□□□□ -0.22
CLDND1-231	ENST00000515620	TRIOBP	Q9H2D6	2365 aa		13.65	□□□□□ -0.22
CLDND1-231	ENST00000515620	ZBTB48	P10074	688 aa	Predicted RBP	13.65	□□□□□ -0.22
CLDND1-231	ENST00000515620	TMPO	P42166	694 aa	Known RBP	13.65	□□□□□ -0.22
CLDND1-231	ENST00000515620	RIC3	Q7Z5B4	369 aa		13.65	□□□□□ -0.22
CLDND1-231	ENST00000515620	HYPK	Q9NX55	129 aa		13.65	□□□□□ -0.22
CLDND1-231	ENST00000515620	COL1A1	P02452	1464 aa	Predicted RBP	13.64	□□□□□ -0.23
CLDND1-231	ENST00000515620	CHL1	O00533	1208 aa		13.64	□□□□□ -0.23
CLDND1-231	ENST00000515620	PDE8A	O60658	829 aa		13.64	□□□□□ -0.23
CLDND1-231	ENST00000515620	HOXB7	P09629	217 aa		13.64	□□□□□ -0.23
CLDND1-231	ENST00000515620	CAP1	Q01518	475 aa		13.64	□□□□□ -0.23
CLDND1-231	ENST00000515620	GOLGA2	Q08379	1002 aa		13.64	□□□□□ -0.23
CLDND1-231	ENST00000515620	STRIP1	Q5VSL9	837 aa		13.64	□□□□□ -0.23
CLDND1-231	ENST00000515620	KIAA0825	Q8IV33	1275 aa		13.64	□□□□□ -0.23
CLDND1-231	ENST00000515620	LAMB1	P07942	1786 aa		13.63	□□□□□ -0.23
CLDND1-231	ENST00000515620		H0YGN5	161 aa		13.63	□□□□□ -0.23
CLDND1-231	ENST00000515620	PCCA	P05165	728 aa	Predicted RBP	13.63	□□□□□ -0.23
CLDND1-231	ENST00000515620	NEUROD2	Q15784	382 aa		13.63	□□□□□ -0.23
CLDND1-231	ENST00000515620	ZNF333	Q96JL9	665 aa		13.63	□□□□□ -0.23
CLDND1-231	ENST00000515620	MYD88	Q99836	296 aa		13.63	□□□□□ -0.23
CLDND1-231	ENST00000515620	DEFB129	Q9H1M3	183 aa		13.63	□□□□□ -0.23
CLDND1-231	ENST00000515620	CEP290	O15078	2479 aa		13.63	□□□□□ -0.23
CLDND1-231	ENST00000515620	SP3	Q02447	781 aa		13.62	□□□□□ -0.23
CLDND1-231	ENST00000515620	MAP3K11	Q16584	847 aa		13.62	□□□□□ -0.23
CLDND1-231	ENST00000515620	SLC4A8	Q2Y0W8	1093 aa		13.62	□□□□□ -0.23
CLDND1-231	ENST00000515620	SLC9C1	Q4G0N8	1177 aa		13.62	□□□□□ -0.23
CLDND1-231	ENST00000515620	OTUD7B	Q6GQQ9	843 aa		13.62	□□□□□ -0.23
CLDND1-231	ENST00000515620	ZBED3	Q96IU2	234 aa	Predicted RBP	13.62	□□□□□ -0.23
CLDND1-231	ENST00000515620	CDC5L	Q99459	802 aa	Known RBP	13.62	□□□□□ -0.23
CLDND1-231	ENST00000515620	COA1	Q9GZY4	146 aa		13.62	□□□□□ -0.23
CLDND1-231	ENST00000515620	SPEF2	Q9C093	1822 aa		13.62	□□□□□ -0.23
CLDND1-231	ENST00000515620	PPP1R12B	O60237	982 aa	Predicted RBP	13.61	□□□□□ -0.23
CLDND1-231	ENST00000515620	MYC	P01106	439 aa	Predicted RBP	13.61	□□□□□ -0.23
CLDND1-231	ENST00000515620	GJA5	P36382	358 aa		13.61	□□□□□ -0.23
CLDND1-231	ENST00000515620	CCT4	P50991	539 aa	Known RBP	13.61	□□□□□ -0.23
CLDND1-231	ENST00000515620	CTSW	P56202	376 aa		13.61	□□□□□ -0.23
CLDND1-231	ENST00000515620	TTLL5	Q6EMB2	1281 aa		13.61	□□□□□ -0.23
CLDND1-231	ENST00000515620	TXNRD3	Q86VQ6	643 aa		13.61	□□□□□ -0.23
CLDND1-231	ENST00000515620	CCDC191	Q8NCU4	936 aa		13.61	□□□□□ -0.23
CLDND1-231	ENST00000515620	CWC25	Q9NXE8	425 aa	Predicted RBP	13.61	□□□□□ -0.23
CLDND1-231	ENST00000515620	MINPP1	Q9UNW1	487 aa		13.61	□□□□□ -0.23
CLDND1-231	ENST00000515620	PTCH2	Q9Y6C5	1203 aa		13.61	□□□□□ -0.23
CLDND1-231	ENST00000515620	MMP14	P50281	582 aa		13.6	□□□□□ -0.23
CLDND1-231	ENST00000515620	DLGAP5	Q15398	846 aa		13.6	□□□□□ -0.23
CLDND1-231	ENST00000515620	DUSP27	Q5VZP5	1158 aa		13.6	□□□□□ -0.23
CLDND1-231	ENST00000515620	CHRDL2	Q6WN34	429 aa		13.6	□□□□□ -0.23
CLDND1-231	ENST00000515620	OTUD5	Q96G74	571 aa		13.6	□□□□□ -0.23
CLDND1-231	ENST00000515620	PHAX	Q9H814	394 aa	Known RBP	13.6	□□□□□ -0.23
CLDND1-231	ENST00000515620	BSDC1	Q9NW68	430 aa	Predicted RBP	13.6	□□□□□ -0.23
CLDND1-231	ENST00000515620	DLL1	O00548	723 aa		13.59	□□□□□ -0.23
CLDND1-231	ENST00000515620	KLRK1	P26718	216 aa		13.59	□□□□□ -0.23
CLDND1-231	ENST00000515620	GTF2I	P78347	998 aa		13.59	□□□□□ -0.23
CLDND1-231	ENST00000515620	NBPF11	Q86T75	865 aa		13.59	□□□□□ -0.23
CLDND1-231	ENST00000515620	CCDC146	Q8IYE0	955 aa		13.59	□□□□□ -0.23
CLDND1-231	ENST00000515620	PTPN18	Q99952	460 aa		13.59	□□□□□ -0.23
CLDND1-231	ENST00000515620	PPP2R3B	Q9Y5P8	575 aa		13.59	□□□□□ -0.23
CLDND1-231	ENST00000515620	SZT2	Q5T011	3432 aa		13.59	□□□□□ -0.23
CLDND1-231	ENST00000515620	CLRN2	A0PK11	232 aa		13.58	□□□□□ -0.24
CLDND1-231	ENST00000515620	IREB2	P48200	963 aa	Known RBP	13.58	□□□□□ -0.24
CLDND1-231	ENST00000515620	GREM2	Q9H772	168 aa		13.58	□□□□□ -0.24
CLDND1-231	ENST00000515620	PCDHAC2	Q9Y5I4	1007 aa		13.58	□□□□□ -0.24
CLDND1-231	ENST00000515620	ZNF804B	A4D1E1	1349 aa		13.58	□□□□□ -0.24
CLDND1-231	ENST00000515620	SUPT20HL1	Q3ZLR7	823 aa		13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms