RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 MUC3BQ9H195 1237 aa6.79□□□□□ -1.32
NUP54-212ENST00000513248 PCMTD2Q9NV79 361 aa6.79□□□□□ -1.32
NUP54-212ENST00000513248 FNDC3AQ9Y2H6 1198 aaKnown RBP6.79□□□□□ -1.32
NUP54-212ENST00000513248 LOC102724428A0A0B4J2F2 783 aa6.78□□□□□ -1.32
NUP54-212ENST00000513248 H3BRB1 525 aa6.78□□□□□ -1.32
NUP54-212ENST00000513248 MMP20O60882 483 aa6.78□□□□□ -1.32
NUP54-212ENST00000513248 SIK1P57059 783 aa6.78□□□□□ -1.32
NUP54-212ENST00000513248 ALKBH2Q6NS38 261 aa6.78□□□□□ -1.32
NUP54-212ENST00000513248 EDEM1Q92611 657 aa6.78□□□□□ -1.32
NUP54-212ENST00000513248 NUDT16Q96DE0 195 aaKnown RBP6.78□□□□□ -1.32
NUP54-212ENST00000513248 RBSNQ9H1K0 784 aa6.78□□□□□ -1.32
NUP54-212ENST00000513248 TUT1Q9H6E5 874 aaKnown RBP6.78□□□□□ -1.32
NUP54-212ENST00000513248 NACADO15069 1562 aa6.78□□□□□ -1.32
NUP54-212ENST00000513248 DNM1Q05193 864 aaKnown RBP6.77□□□□□ -1.33
NUP54-212ENST00000513248 HFE2Q6ZVN8 426 aa6.77□□□□□ -1.33
NUP54-212ENST00000513248 SND1Q7KZF4 910 aaKnown RBP eCLIP6.77□□□□□ -1.33
NUP54-212ENST00000513248 PAX4O43316 350 aa6.76□□□□□ -1.33
NUP54-212ENST00000513248 GHRHP01286 108 aa6.76□□□□□ -1.33
NUP54-212ENST00000513248 PDGFAP04085 211 aa6.76□□□□□ -1.33
NUP54-212ENST00000513248 RPLP1P05386 114 aaKnown RBP6.76□□□□□ -1.33
NUP54-212ENST00000513248 PCSK2P16519 638 aa6.76□□□□□ -1.33
NUP54-212ENST00000513248 MZF1P28698 734 aaPredicted RBP6.76□□□□□ -1.33
NUP54-212ENST00000513248 TRIM26Q12899 539 aaPredicted RBP6.76□□□□□ -1.33
NUP54-212ENST00000513248 SETDB1Q15047 1291 aa6.76□□□□□ -1.33
NUP54-212ENST00000513248 XKR5Q6UX68 686 aa6.76□□□□□ -1.33
NUP54-212ENST00000513248 GLYCTKQ8IVS8 523 aa6.76□□□□□ -1.33
NUP54-212ENST00000513248 GJD3Q8N144 294 aa6.76□□□□□ -1.33
NUP54-212ENST00000513248 IL22RA1Q8N6P7 574 aa6.76□□□□□ -1.33
NUP54-212ENST00000513248 KRTAP9-9Q9BYP9 154 aa6.76□□□□□ -1.33
NUP54-212ENST00000513248 KRTAP9-4Q9BYQ2 154 aa6.76□□□□□ -1.33
NUP54-212ENST00000513248 CCDC87Q9NVE4 849 aa6.76□□□□□ -1.33
NUP54-212ENST00000513248 KIAA1324LA8MWY0 1029 aaPredicted RBP6.75□□□□□ -1.33
NUP54-212ENST00000513248 AAMPQ13685 434 aa6.75□□□□□ -1.33
NUP54-212ENST00000513248 J3QW42 95 aa6.74□□□□□ -1.33
NUP54-212ENST00000513248 ALX3O95076 343 aa6.74□□□□□ -1.33
NUP54-212ENST00000513248 TTC39BQ5VTQ0 682 aaPredicted RBP6.74□□□□□ -1.33
NUP54-212ENST00000513248 GDF6Q6KF10 455 aaPredicted RBP6.74□□□□□ -1.33
NUP54-212ENST00000513248 PDE12Q6L8Q7 609 aaKnown RBP6.74□□□□□ -1.33
NUP54-212ENST00000513248 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.74□□□□□ -1.33
NUP54-212ENST00000513248 OR13H1Q8NG92 308 aa6.74□□□□□ -1.33
NUP54-212ENST00000513248 NSUN5Q96P11 429 aaKnown RBP6.74□□□□□ -1.33
NUP54-212ENST00000513248 FMNL2Q96PY5 1086 aa6.74□□□□□ -1.33
NUP54-212ENST00000513248 FAM129BQ96TA1 746 aa6.74□□□□□ -1.33
NUP54-212ENST00000513248 RBCK1Q9BYM8 510 aa6.74□□□□□ -1.33
NUP54-212ENST00000513248 GGNBP2Q9H3C7 697 aa6.74□□□□□ -1.33
NUP54-212ENST00000513248 ABI2Q9NYB9 513 aaPredicted RBP6.74□□□□□ -1.33
NUP54-212ENST00000513248 POLIQ9UNA4 740 aa6.74□□□□□ -1.33
NUP54-212ENST00000513248 RAXQ9Y2V3 346 aa6.74□□□□□ -1.33
NUP54-212ENST00000513248 SSTR4P31391 388 aa6.73□□□□□ -1.33
NUP54-212ENST00000513248 UVSSAQ2YD98 709 aa6.73□□□□□ -1.33
NUP54-212ENST00000513248 ZNF438Q7Z4V0 828 aa6.73□□□□□ -1.33
NUP54-212ENST00000513248 TTC16Q8NEE8 873 aa6.73□□□□□ -1.33
NUP54-212ENST00000513248 CITED4Q96RK1 184 aa6.73□□□□□ -1.33
NUP54-212ENST00000513248 ELP3Q9H9T3 547 aa6.73□□□□□ -1.33
NUP54-212ENST00000513248 PPME1Q9Y570 386 aa6.73□□□□□ -1.33
NUP54-212ENST00000513248 A6NHS1 94 aa6.72□□□□□ -1.33
NUP54-212ENST00000513248 DHX15O43143 795 aaKnown RBP6.72□□□□□ -1.33
NUP54-212ENST00000513248 COBLO75128 1261 aa6.72□□□□□ -1.33
NUP54-212ENST00000513248 IGLV1-40P01703 118 aa6.72□□□□□ -1.33
NUP54-212ENST00000513248 GLB1P16278 677 aa6.72□□□□□ -1.33
NUP54-212ENST00000513248 TXKP42681 527 aa6.72□□□□□ -1.33
NUP54-212ENST00000513248 C8orf34Q49A92 452 aa6.72□□□□□ -1.33
NUP54-212ENST00000513248 CEP41Q9BYV8 373 aa6.72□□□□□ -1.33
NUP54-212ENST00000513248 GZF1Q9H116 711 aaPredicted RBP6.72□□□□□ -1.33
NUP54-212ENST00000513248 TMEM63CQ9P1W3 806 aa6.72□□□□□ -1.33
NUP54-212ENST00000513248 USP5P45974 858 aa6.71□□□□□ -1.34
NUP54-212ENST00000513248 HYAL2Q12891 473 aa6.71□□□□□ -1.34
NUP54-212ENST00000513248 DNAJC14Q6Y2X3 702 aaPredicted RBP6.71□□□□□ -1.34
NUP54-212ENST00000513248 STOML1Q9UBI4 398 aa6.71□□□□□ -1.34
NUP54-212ENST00000513248 DCTN4Q9UJW0 460 aa6.71□□□□□ -1.34
NUP54-212ENST00000513248 TRIM33Q9UPN9 1127 aa6.71□□□□□ -1.34
NUP54-212ENST00000513248 CYP2E1P05181 493 aaPredicted RBP6.7□□□□□ -1.34
NUP54-212ENST00000513248 IRAK1P51617 712 aa6.7□□□□□ -1.34
NUP54-212ENST00000513248 COL13A1Q5TAT6 717 aaPredicted RBP6.7□□□□□ -1.34
NUP54-212ENST00000513248 UBL7Q96S82 380 aaPredicted RBP6.7□□□□□ -1.34
NUP54-212ENST00000513248 KIF4AO95239 1232 aa6.69□□□□□ -1.34
NUP54-212ENST00000513248 EHHADHQ08426 723 aa6.69□□□□□ -1.34
NUP54-212ENST00000513248 DSC3Q14574 896 aa6.69□□□□□ -1.34
NUP54-212ENST00000513248 INTS5Q6P9B9 1019 aaKnown RBP6.69□□□□□ -1.34
NUP54-212ENST00000513248 AGGF1Q8N302 714 aaeCLIP6.69□□□□□ -1.34
NUP54-212ENST00000513248 ALKBH8Q96BT7 664 aaKnown RBP6.69□□□□□ -1.34
NUP54-212ENST00000513248 CNTN3Q9P232 1028 aa6.69□□□□□ -1.34
NUP54-212ENST00000513248 KANSL3Q9P2N6 904 aa6.69□□□□□ -1.34
NUP54-212ENST00000513248 KRTAP4-8A0A0G2JLE6 195 aa6.68□□□□□ -1.34
NUP54-212ENST00000513248 ZBTB7CA1YPR0 619 aa6.68□□□□□ -1.34
NUP54-212ENST00000513248 TM4SF5O14894 197 aa6.68□□□□□ -1.34
NUP54-212ENST00000513248 MED26O95402 600 aa6.68□□□□□ -1.34
NUP54-212ENST00000513248 CD68P34810 354 aaPredicted RBP6.68□□□□□ -1.34
NUP54-212ENST00000513248 TMC7Q7Z402 723 aa6.68□□□□□ -1.34
NUP54-212ENST00000513248 ZDHHC13Q8IUH4 622 aa6.68□□□□□ -1.34
NUP54-212ENST00000513248 ARMC10Q8N2F6 343 aa6.68□□□□□ -1.34
NUP54-212ENST00000513248 C1orf127Q8N9H9 656 aa6.68□□□□□ -1.34
NUP54-212ENST00000513248 GALNT11Q8NCW6 608 aa6.68□□□□□ -1.34
NUP54-212ENST00000513248 FAM46AQ96IP4 442 aaKnown RBP6.68□□□□□ -1.34
NUP54-212ENST00000513248 SPACA7Q96KW9 195 aa6.68□□□□□ -1.34
NUP54-212ENST00000513248 ASB16Q96NS5 453 aa6.68□□□□□ -1.34
NUP54-212ENST00000513248 CHRDQ9H2X0 955 aa6.68□□□□□ -1.34
NUP54-212ENST00000513248 BRPF3Q9ULD4 1205 aa6.68□□□□□ -1.34
NUP54-212ENST00000513248 GPR182O15218 404 aa6.67□□□□□ -1.34
NUP54-212ENST00000513248 TREHO43280 583 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms