RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 COA1Q9GZY4 146 aa22.71■■□□□ 1.23
TPM3-220ENST00000509601 CHMP3Q9Y3E7 222 aa22.71■■□□□ 1.23
TPM3-220ENST00000509601 UTYO14607 1347 aa22.71■■□□□ 1.23
TPM3-220ENST00000509601 TRPM7Q96QT4 1865 aa22.71■■□□□ 1.23
TPM3-220ENST00000509601 TAF5LO75529 589 aa22.7■■□□□ 1.22
TPM3-220ENST00000509601 CELF2O95319 508 aaKnown RBP22.7■■□□□ 1.22
TPM3-220ENST00000509601 COL13A1Q5TAT6 717 aaPredicted RBP22.7■■□□□ 1.22
TPM3-220ENST00000509601 HELBQ8NG08 1087 aaPredicted RBP22.7■■□□□ 1.22
TPM3-220ENST00000509601 TLL2Q9Y6L7 1015 aa22.7■■□□□ 1.22
TPM3-220ENST00000509601 PTPRCP08575 1304 aa22.7■■□□□ 1.22
TPM3-220ENST00000509601 ZNF609O15014 1411 aa22.7■■□□□ 1.22
TPM3-220ENST00000509601 WDR33Q9C0J8 1336 aaKnown RBP22.69■■□□□ 1.22
TPM3-220ENST00000509601 IRS2Q9Y4H2 1338 aa22.69■■□□□ 1.22
TPM3-220ENST00000509601 ALDH1L2Q3SY69 923 aa22.69■■□□□ 1.22
TPM3-220ENST00000509601 DACT2Q5SW24 774 aa22.69■■□□□ 1.22
TPM3-220ENST00000509601 MXD3Q9BW11 206 aa22.69■■□□□ 1.22
TPM3-220ENST00000509601 ASTN2O75129 1339 aaPredicted RBP22.68■■□□□ 1.22
TPM3-220ENST00000509601 CCDC57Q2TAC2 916 aa22.68■■□□□ 1.22
TPM3-220ENST00000509601 KIF4BQ2VIQ3 1234 aa22.68■■□□□ 1.22
TPM3-220ENST00000509601 PSME4Q14997 1843 aa22.68■■□□□ 1.22
TPM3-220ENST00000509601 USP17L8P0C7I0 530 aa22.67■■□□□ 1.22
TPM3-220ENST00000509601 STRIP1Q5VSL9 837 aa22.67■■□□□ 1.22
TPM3-220ENST00000509601 SAPCD2Q86UD0 394 aa22.67■■□□□ 1.22
TPM3-220ENST00000509601 SCARF1Q14162 830 aa22.66■■□□□ 1.22
TPM3-220ENST00000509601 LDHAL6AQ6ZMR3 332 aa22.66■■□□□ 1.22
TPM3-220ENST00000509601 C15orf52Q6ZUT6 534 aaKnown RBP22.66■■□□□ 1.22
TPM3-220ENST00000509601 KRT26Q7Z3Y9 468 aa22.66■■□□□ 1.22
TPM3-220ENST00000509601 WBP1LQ9NX94 342 aa22.66■■□□□ 1.22
TPM3-220ENST00000509601 KCNJ4P48050 445 aa22.65■■□□□ 1.22
TPM3-220ENST00000509601 TTLL5Q6EMB2 1281 aa22.65■■□□□ 1.22
TPM3-220ENST00000509601 CYP4F22Q6NT55 531 aa22.65■■□□□ 1.22
TPM3-220ENST00000509601 DCPSQ96C86 337 aaKnown RBP22.65■■□□□ 1.22
TPM3-220ENST00000509601 CAPNS2Q96L46 248 aa22.65■■□□□ 1.22
TPM3-220ENST00000509601 USP44Q9H0E7 712 aa22.65■■□□□ 1.22
TPM3-220ENST00000509601 CD209Q9NNX6 404 aa22.65■■□□□ 1.22
TPM3-220ENST00000509601 MYOZ2Q9NPC6 264 aa22.65■■□□□ 1.22
TPM3-220ENST00000509601 RABL6Q3YEC7 729 aaPredicted RBP22.64■■□□□ 1.21
TPM3-220ENST00000509601 PUS3Q9BZE2 481 aaKnown RBP22.64■■□□□ 1.21
TPM3-220ENST00000509601 ZNF408Q9H9D4 720 aa22.64■■□□□ 1.21
TPM3-220ENST00000509601 ADM5C9JUS6 153 aa22.63■■□□□ 1.21
TPM3-220ENST00000509601 FOXN1O15353 648 aa22.63■■□□□ 1.21
TPM3-220ENST00000509601 CT47B1P0C2W7 299 aaPredicted RBP22.63■■□□□ 1.21
TPM3-220ENST00000509601 ANKRD44Q8N8A2 993 aa22.63■■□□□ 1.21
TPM3-220ENST00000509601 BICC1Q9H694 974 aaKnown RBP22.63■■□□□ 1.21
TPM3-220ENST00000509601 CNNM1Q9NRU3 951 aa22.63■■□□□ 1.21
TPM3-220ENST00000509601 SMC4Q9NTJ3 1288 aa22.63■■□□□ 1.21
TPM3-220ENST00000509601 GTF2IP78347 998 aa22.62■■□□□ 1.21
TPM3-220ENST00000509601 TAF7LQ5H9L4 462 aa22.62■■□□□ 1.21
TPM3-220ENST00000509601 FBXW7Q969H0 707 aa22.62■■□□□ 1.21
TPM3-220ENST00000509601 HHIPL1Q96JK4 782 aa22.62■■□□□ 1.21
TPM3-220ENST00000509601 GGA3Q9NZ52 723 aa22.62■■□□□ 1.21
TPM3-220ENST00000509601 RIPOR2Q9Y4F9 1068 aa22.62■■□□□ 1.21
TPM3-220ENST00000509601 PLIN1O60240 522 aa22.61■■□□□ 1.21
TPM3-220ENST00000509601 ECE1P42892 770 aa22.61■■□□□ 1.21
TPM3-220ENST00000509601 BRPF1P55201 1214 aaPredicted RBP22.61■■□□□ 1.21
TPM3-220ENST00000509601 ANGEL2Q5VTE6 544 aaKnown RBP22.61■■□□□ 1.21
TPM3-220ENST00000509601 MIER1Q8N108 512 aa22.61■■□□□ 1.21
TPM3-220ENST00000509601 ZNF646O15015 1829 aaPredicted RBP22.61■■□□□ 1.21
TPM3-220ENST00000509601 IL1R1P14778 569 aa22.6■■□□□ 1.21
TPM3-220ENST00000509601 NBPF9Q3BBW0 867 aa22.6■■□□□ 1.21
TPM3-220ENST00000509601 PAXIP1Q6ZW49 1069 aaPredicted RBP22.6■■□□□ 1.21
TPM3-220ENST00000509601 NOB1Q9ULX3 412 aaKnown RBP22.6■■□□□ 1.21
TPM3-220ENST00000509601 MYO3BQ8WXR4 1341 aa22.59■■□□□ 1.21
TPM3-220ENST00000509601 AOC2O75106 756 aa22.59■■□□□ 1.21
TPM3-220ENST00000509601 GRM1Q13255 1194 aa22.59■■□□□ 1.21
TPM3-220ENST00000509601 SULF1Q8IWU6 871 aa22.59■■□□□ 1.21
TPM3-220ENST00000509601 MMP14P50281 582 aa22.58■■□□□ 1.21
TPM3-220ENST00000509601 MAP2K1Q02750 393 aaPredicted RBP22.58■■□□□ 1.21
TPM3-220ENST00000509601 OGFOD1Q8N543 542 aa22.58■■□□□ 1.21
TPM3-220ENST00000509601 CERS5Q8N5B7 392 aa22.58■■□□□ 1.21
TPM3-220ENST00000509601 WNT10BO00744 389 aa22.57■■□□□ 1.2
TPM3-220ENST00000509601 MAP2K2P36507 400 aa22.57■■□□□ 1.2
TPM3-220ENST00000509601 RARSP54136 660 aaKnown RBP22.57■■□□□ 1.2
TPM3-220ENST00000509601 UBE4AQ14139 1066 aa22.57■■□□□ 1.2
TPM3-220ENST00000509601 LRRC24Q50LG9 513 aa22.57■■□□□ 1.2
TPM3-220ENST00000509601 DIEXFQ68CQ4 756 aaKnown RBP22.57■■□□□ 1.2
TPM3-220ENST00000509601 CDCA5Q96FF9 252 aa22.57■■□□□ 1.2
TPM3-220ENST00000509601 ZBED3Q96IU2 234 aaPredicted RBP22.57■■□□□ 1.2
TPM3-220ENST00000509601 GBA2Q9HCG7 927 aaPredicted RBP22.57■■□□□ 1.2
TPM3-220ENST00000509601 SCAF8Q9UPN6 1271 aaKnown RBP22.57■■□□□ 1.2
TPM3-220ENST00000509601 A0A1B0GUL6 1792 aa22.57■■□□□ 1.2
TPM3-220ENST00000509601 CTCFP49711 727 aaPredicted RBP22.56■■□□□ 1.2
TPM3-220ENST00000509601 HUNKP57058 714 aa22.56■■□□□ 1.2
TPM3-220ENST00000509601 ZNF804AQ7Z570 1209 aa22.56■■□□□ 1.2
TPM3-220ENST00000509601 KIAA0825Q8IV33 1275 aa22.56■■□□□ 1.2
TPM3-220ENST00000509601 AIDAQ96BJ3 306 aa22.56■■□□□ 1.2
TPM3-220ENST00000509601 FAM84BQ96KN1 310 aaPredicted RBP22.56■■□□□ 1.2
TPM3-220ENST00000509601 PITPNM2Q9BZ72 1349 aa22.56■■□□□ 1.2
TPM3-220ENST00000509601 C2orf69Q8N8R5 385 aa22.55■■□□□ 1.2
TPM3-220ENST00000509601 KLHDC4Q8TBB5 520 aa22.55■■□□□ 1.2
TPM3-220ENST00000509601 SASH1O94885 1247 aa22.54■■□□□ 1.2
TPM3-220ENST00000509601 RFX5P48382 616 aaPredicted RBP22.54■■□□□ 1.2
TPM3-220ENST00000509601 ZIC5Q96T25 663 aa22.54■■□□□ 1.2
TPM3-220ENST00000509601 PRDM10Q9NQV6 1147 aa22.54■■□□□ 1.2
TPM3-220ENST00000509601 MROH5Q6ZUA9 1318 aa22.54■■□□□ 1.2
TPM3-220ENST00000509601 GYG1P46976 350 aa22.53■■□□□ 1.2
TPM3-220ENST00000509601 TDRD7Q8NHU6 1098 aaKnown RBP22.53■■□□□ 1.2
TPM3-220ENST00000509601 API5Q9BZZ5 524 aaKnown RBP22.53■■□□□ 1.2
TPM3-220ENST00000509601 HDAC9Q9UKV0 1011 aa22.53■■□□□ 1.2
TPM3-220ENST00000509601 HSPA8P11142 646 aaKnown RBP22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms