RNA–Protein interactions for RNA: ENST00000508546.5

NEDD9-211, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5

Gene NEDD9, Length 581 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-211ENST00000508546 SEC31BQ9NQW1 1179 aa12.22□□□□□ -0.45
NEDD9-211ENST00000508546 SPEF2Q9C093 1822 aa12.22□□□□□ -0.45
NEDD9-211ENST00000508546 XDHP47989 1333 aa12.21□□□□□ -0.45
NEDD9-211ENST00000508546 USP17L3A6NCW0 530 aa12.21□□□□□ -0.45
NEDD9-211ENST00000508546 USP17L4A6NCW7 530 aa12.21□□□□□ -0.45
NEDD9-211ENST00000508546 CCDC152Q4G0S7 254 aa12.21□□□□□ -0.45
NEDD9-211ENST00000508546 USP17L1Q7RTZ2 530 aa12.21□□□□□ -0.45
NEDD9-211ENST00000508546 PDE8AO60658 829 aa12.2□□□□□ -0.46
NEDD9-211ENST00000508546 ATP2B4P23634 1241 aa12.2□□□□□ -0.46
NEDD9-211ENST00000508546 CCDC191Q8NCU4 936 aa12.2□□□□□ -0.46
NEDD9-211ENST00000508546 TRIM35Q9UPQ4 493 aa12.2□□□□□ -0.46
NEDD9-211ENST00000508546 ECM29Q5VYK3 1845 aa12.2□□□□□ -0.46
NEDD9-211ENST00000508546 SOX1O00570 391 aaPredicted RBP12.19□□□□□ -0.46
NEDD9-211ENST00000508546 PCCAP05165 728 aaPredicted RBP12.19□□□□□ -0.46
NEDD9-211ENST00000508546 NF2P35240 595 aa12.19□□□□□ -0.46
NEDD9-211ENST00000508546 MMP14P50281 582 aa12.19□□□□□ -0.46
NEDD9-211ENST00000508546 CAP1Q01518 475 aa12.19□□□□□ -0.46
NEDD9-211ENST00000508546 SREBF2Q12772 1141 aa12.19□□□□□ -0.46
NEDD9-211ENST00000508546 NEUROD2Q15784 382 aa12.19□□□□□ -0.46
NEDD9-211ENST00000508546 NBPF9Q3BBW0 867 aa12.19□□□□□ -0.46
NEDD9-211ENST00000508546 ANKRD18AQ8IVF6 992 aa12.19□□□□□ -0.46
NEDD9-211ENST00000508546 ZNF333Q96JL9 665 aa12.19□□□□□ -0.46
NEDD9-211ENST00000508546 PRO3102Q9H379 93 aa12.19□□□□□ -0.46
NEDD9-211ENST00000508546 SCAF8Q9UPN6 1271 aaKnown RBP12.19□□□□□ -0.46
NEDD9-211ENST00000508546 PTPN22Q9Y2R2 807 aa12.19□□□□□ -0.46
NEDD9-211ENST00000508546 LAS1LQ9Y4W2 734 aaKnown RBP12.19□□□□□ -0.46
NEDD9-211ENST00000508546 MED23Q9ULK4 1368 aa12.18□□□□□ -0.46
NEDD9-211ENST00000508546 MYO3BQ8WXR4 1341 aa12.18□□□□□ -0.46
NEDD9-211ENST00000508546 WNT10BO00744 389 aa12.18□□□□□ -0.46
NEDD9-211ENST00000508546 GOLGA2Q08379 1002 aa12.18□□□□□ -0.46
NEDD9-211ENST00000508546 TTLL12Q14166 644 aaPredicted RBP12.18□□□□□ -0.46
NEDD9-211ENST00000508546 PRAMEF18Q5VWM3 479 aa12.18□□□□□ -0.46
NEDD9-211ENST00000508546 DUSP27Q5VZP5 1158 aa12.18□□□□□ -0.46
NEDD9-211ENST00000508546 RIC3Q7Z5B4 369 aa12.18□□□□□ -0.46
NEDD9-211ENST00000508546 OGFOD1Q8N543 542 aa12.18□□□□□ -0.46
NEDD9-211ENST00000508546 COL25A1Q9BXS0 654 aaPredicted RBP12.18□□□□□ -0.46
NEDD9-211ENST00000508546 ALDH1A1P00352 501 aa12.17□□□□□ -0.46
NEDD9-211ENST00000508546 RALBP1Q15311 655 aa12.17□□□□□ -0.46
NEDD9-211ENST00000508546 DACT2Q5SW24 774 aa12.17□□□□□ -0.46
NEDD9-211ENST00000508546 ARMC9Q7Z3E5 817 aa12.17□□□□□ -0.46
NEDD9-211ENST00000508546 CD99L2Q8TCZ2 262 aa12.17□□□□□ -0.46
NEDD9-211ENST00000508546 VCANP13611 3396 aa12.16□□□□□ -0.46
NEDD9-211ENST00000508546 PTPN12Q05209 780 aaKnown RBP12.16□□□□□ -0.46
NEDD9-211ENST00000508546 LDLRAD1Q5T700 205 aa12.16□□□□□ -0.46
NEDD9-211ENST00000508546 STRIP1Q5VSL9 837 aa12.16□□□□□ -0.46
NEDD9-211ENST00000508546 RUNDC1Q96C34 613 aa12.16□□□□□ -0.46
NEDD9-211ENST00000508546 LRCH3Q96II8 777 aa12.16□□□□□ -0.46
NEDD9-211ENST00000508546 CDC5LQ99459 802 aaKnown RBP12.16□□□□□ -0.46
NEDD9-211ENST00000508546 MYD88Q99836 296 aa12.16□□□□□ -0.46
NEDD9-211ENST00000508546 PHAXQ9H814 394 aaKnown RBP12.16□□□□□ -0.46
NEDD9-211ENST00000508546 CWC25Q9NXE8 425 aaPredicted RBP12.16□□□□□ -0.46
NEDD9-211ENST00000508546 COL1A1P02452 1464 aaPredicted RBP12.15□□□□□ -0.46
NEDD9-211ENST00000508546 INHBEP58166 350 aa12.15□□□□□ -0.46
NEDD9-211ENST00000508546 SPRYD7Q5W111 196 aa12.15□□□□□ -0.46
NEDD9-211ENST00000508546 APOBEC3FQ8IUX4 373 aaKnown RBP12.15□□□□□ -0.46
NEDD9-211ENST00000508546 CCDC146Q8IYE0 955 aa12.15□□□□□ -0.46
NEDD9-211ENST00000508546 CCDC85AQ96PX6 553 aaPredicted RBP12.15□□□□□ -0.46
NEDD9-211ENST00000508546 TMEM106CQ9BVX2 250 aa12.15□□□□□ -0.46
NEDD9-211ENST00000508546 MBIPQ9NS73 344 aa12.15□□□□□ -0.46
NEDD9-211ENST00000508546 BSDC1Q9NW68 430 aaPredicted RBP12.15□□□□□ -0.46
NEDD9-211ENST00000508546 ZSWIM8A7E2V4 1837 aa12.15□□□□□ -0.46
NEDD9-211ENST00000508546 WTIPA6NIX2 430 aaPredicted RBP12.14□□□□□ -0.47
NEDD9-211ENST00000508546 ZNF853P0CG23 659 aa12.14□□□□□ -0.47
NEDD9-211ENST00000508546 CCT4P50991 539 aaKnown RBP12.14□□□□□ -0.47
NEDD9-211ENST00000508546 CTSWP56202 376 aa12.14□□□□□ -0.47
NEDD9-211ENST00000508546 ERO1AQ96HE7 468 aa12.14□□□□□ -0.47
NEDD9-211ENST00000508546 ZBED3Q96IU2 234 aaPredicted RBP12.14□□□□□ -0.47
NEDD9-211ENST00000508546 METTL22Q9BUU2 404 aaPredicted RBP12.14□□□□□ -0.47
NEDD9-211ENST00000508546 MXD3Q9BW11 206 aa12.14□□□□□ -0.47
NEDD9-211ENST00000508546 COA1Q9GZY4 146 aa12.14□□□□□ -0.47
NEDD9-211ENST00000508546 MINPP1Q9UNW1 487 aa12.14□□□□□ -0.47
NEDD9-211ENST00000508546 MANSC4A6NHS7 340 aaPredicted RBP12.13□□□□□ -0.47
NEDD9-211ENST00000508546 IGF2BP3O00425 579 aaKnown RBP eCLIP12.13□□□□□ -0.47
NEDD9-211ENST00000508546 SASH1O94885 1247 aa12.13□□□□□ -0.47
NEDD9-211ENST00000508546 MYCP01106 439 aaPredicted RBP12.13□□□□□ -0.47
NEDD9-211ENST00000508546 MAP3K11Q16584 847 aa12.13□□□□□ -0.47
NEDD9-211ENST00000508546 IFNL1Q8IU54 200 aa12.13□□□□□ -0.47
NEDD9-211ENST00000508546 TTLL11Q8NHH1 800 aa12.13□□□□□ -0.47
NEDD9-211ENST00000508546 JARID2Q92833 1246 aaPredicted RBP12.13□□□□□ -0.47
NEDD9-211ENST00000508546 UNCXA6NJT0 531 aa12.12□□□□□ -0.47
NEDD9-211ENST00000508546 DDX58O95786 925 aaKnown RBP12.12□□□□□ -0.47
NEDD9-211ENST00000508546 ZBTB48P10074 688 aaPredicted RBP12.12□□□□□ -0.47
NEDD9-211ENST00000508546 SLC4A8Q2Y0W8 1093 aa12.12□□□□□ -0.47
NEDD9-211ENST00000508546 TTLL5Q6EMB2 1281 aa12.12□□□□□ -0.47
NEDD9-211ENST00000508546 SHISA4Q96DD7 197 aa12.12□□□□□ -0.47
NEDD9-211ENST00000508546 EFCC1Q9HA90 598 aa12.12□□□□□ -0.47
NEDD9-211ENST00000508546 ANGEL1Q9UNK9 670 aaKnown RBP12.12□□□□□ -0.47
NEDD9-211ENST00000508546 LEMD3Q9Y2U8 911 aa12.12□□□□□ -0.47
NEDD9-211ENST00000508546 PTCH2Q9Y6C5 1203 aa12.12□□□□□ -0.47
NEDD9-211ENST00000508546 CACNA1FO60840 1977 aa12.12□□□□□ -0.47
NEDD9-211ENST00000508546 SPTBN5Q9NRC6 3674 aaKnown RBP12.12□□□□□ -0.47
NEDD9-211ENST00000508546 A0A1B0GUL6 1792 aa12.11□□□□□ -0.47
NEDD9-211ENST00000508546 CRHR2Q13324 411 aa12.11□□□□□ -0.47
NEDD9-211ENST00000508546 PRKG1Q13976 671 aa12.11□□□□□ -0.47
NEDD9-211ENST00000508546 SLC9C1Q4G0N8 1177 aa12.11□□□□□ -0.47
NEDD9-211ENST00000508546 TXNRD3Q86VQ6 643 aa12.11□□□□□ -0.47
NEDD9-211ENST00000508546 FBXW7Q969H0 707 aa12.11□□□□□ -0.47
NEDD9-211ENST00000508546 SLC10A4Q96EP9 437 aa12.11□□□□□ -0.47
NEDD9-211ENST00000508546 CHMP4AQ9BY43 222 aa12.11□□□□□ -0.47
NEDD9-211ENST00000508546 GREM2Q9H772 168 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms