RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 TCF12Q99081 682 aa6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 RASSF4Q9H2L5 321 aa6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 GGA1Q9UJY5 639 aa6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 SLC6A14Q9UN76 642 aa6.63□□□□□ -1.35
HMGB1P28-201ENST00000507778 USP31Q70CQ4 1352 aa6.62□□□□□ -1.35
HMGB1P28-201ENST00000507778 ELOA3CA0A087WX78 387 aaPredicted RBP6.62□□□□□ -1.35
HMGB1P28-201ENST00000507778 ELOA3DA6NLF2 546 aaPredicted RBP6.62□□□□□ -1.35
HMGB1P28-201ENST00000507778 PDE2AO00408 941 aaPredicted RBP6.62□□□□□ -1.35
HMGB1P28-201ENST00000507778 FCGRTP55899 365 aa6.62□□□□□ -1.35
HMGB1P28-201ENST00000507778 ATP11AP98196 1134 aa6.62□□□□□ -1.35
HMGB1P28-201ENST00000507778 TAF1CQ15572 869 aaPredicted RBP6.62□□□□□ -1.35
HMGB1P28-201ENST00000507778 ELOA3BQ3SY89 546 aa6.62□□□□□ -1.35
HMGB1P28-201ENST00000507778 ELMSAN1Q6PJG2 1045 aa6.62□□□□□ -1.35
HMGB1P28-201ENST00000507778 FCHSD1Q86WN1 690 aa6.62□□□□□ -1.35
HMGB1P28-201ENST00000507778 ELOA3Q8NG57 546 aa6.62□□□□□ -1.35
HMGB1P28-201ENST00000507778 NXPE3Q969Y0 559 aa6.62□□□□□ -1.35
HMGB1P28-201ENST00000507778 OXCT2Q9BYC2 517 aaPredicted RBP6.62□□□□□ -1.35
HMGB1P28-201ENST00000507778 BHLHE41Q9C0J9 482 aaPredicted RBP6.62□□□□□ -1.35
HMGB1P28-201ENST00000507778 ZFYVE1Q9HBF4 777 aa6.62□□□□□ -1.35
HMGB1P28-201ENST00000507778 METTL5Q9NRN9 209 aaKnown RBP6.62□□□□□ -1.35
HMGB1P28-201ENST00000507778 GDF2Q9UK05 429 aaPredicted RBP6.62□□□□□ -1.35
HMGB1P28-201ENST00000507778 SMNDC1O75940 238 aaKnown RBP eCLIP6.61□□□□□ -1.35
HMGB1P28-201ENST00000507778 ZNF76P36508 570 aa6.61□□□□□ -1.35
HMGB1P28-201ENST00000507778 PERM1Q5SV97 790 aa6.61□□□□□ -1.35
HMGB1P28-201ENST00000507778 CEP135Q66GS9 1140 aa6.61□□□□□ -1.35
HMGB1P28-201ENST00000507778 DTHD1Q6ZMT9 781 aa6.61□□□□□ -1.35
HMGB1P28-201ENST00000507778 RNF34Q969K3 372 aa6.61□□□□□ -1.35
HMGB1P28-201ENST00000507778 PLD4Q96BZ4 506 aa6.61□□□□□ -1.35
HMGB1P28-201ENST00000507778 HHIPQ96QV1 700 aa6.61□□□□□ -1.35
HMGB1P28-201ENST00000507778 ABCB6Q9NP58 842 aa6.61□□□□□ -1.35
HMGB1P28-201ENST00000507778 FRRS1LQ9P0K9 344 aa6.61□□□□□ -1.35
HMGB1P28-201ENST00000507778 ST13P50502 369 aaKnown RBP6.6□□□□□ -1.35
HMGB1P28-201ENST00000507778 HDLBPQ00341 1268 aaKnown RBP6.6□□□□□ -1.35
HMGB1P28-201ENST00000507778 FANCCQ00597 558 aa6.6□□□□□ -1.35
HMGB1P28-201ENST00000507778 MEI1Q5TIA1 1274 aa6.6□□□□□ -1.35
HMGB1P28-201ENST00000507778 SLCO4C1Q6ZQN7 724 aa6.6□□□□□ -1.35
HMGB1P28-201ENST00000507778 ASAP3Q8TDY4 903 aa6.6□□□□□ -1.35
HMGB1P28-201ENST00000507778 POP1Q99575 1024 aaKnown RBP6.6□□□□□ -1.35
HMGB1P28-201ENST00000507778 MDFIQ99750 246 aa6.6□□□□□ -1.35
HMGB1P28-201ENST00000507778 SMG9Q9H0W8 520 aaKnown RBP6.6□□□□□ -1.35
HMGB1P28-201ENST00000507778 AKAP2Q9Y2D5 859 aa6.6□□□□□ -1.35
HMGB1P28-201ENST00000507778 A0A096LPE4 126 aa6.59□□□□□ -1.35
HMGB1P28-201ENST00000507778 A0A1W2PPZ6 126 aa6.59□□□□□ -1.35
HMGB1P28-201ENST00000507778 METTL12A8MUP2 240 aa6.59□□□□□ -1.35
HMGB1P28-201ENST00000507778 ADAMTS2O95450 1211 aa6.59□□□□□ -1.35
HMGB1P28-201ENST00000507778 GRIA4P48058 902 aa6.59□□□□□ -1.35
HMGB1P28-201ENST00000507778 KRT76Q01546 638 aa6.59□□□□□ -1.35
HMGB1P28-201ENST00000507778 PTPN12Q05209 780 aaKnown RBP6.59□□□□□ -1.35
HMGB1P28-201ENST00000507778 SPRED3Q2MJR0 410 aa6.59□□□□□ -1.35
HMGB1P28-201ENST00000507778 C9orf131Q5VYM1 1079 aa6.59□□□□□ -1.35
HMGB1P28-201ENST00000507778 C3orf58Q8NDZ4 430 aa6.59□□□□□ -1.35
HMGB1P28-201ENST00000507778 LPIN3Q9BQK8 851 aa6.59□□□□□ -1.35
HMGB1P28-201ENST00000507778 NAGPAQ9UK23 515 aa6.59□□□□□ -1.35
HMGB1P28-201ENST00000507778 PPM1HQ9ULR3 514 aa6.59□□□□□ -1.35
HMGB1P28-201ENST00000507778 TTF2Q9UNY4 1162 aaKnown RBP6.59□□□□□ -1.35
HMGB1P28-201ENST00000507778 WIPF1O43516 503 aa6.58□□□□□ -1.36
HMGB1P28-201ENST00000507778 RGS9O75916 674 aaPredicted RBP6.58□□□□□ -1.36
HMGB1P28-201ENST00000507778 EPXP11678 715 aa6.58□□□□□ -1.36
HMGB1P28-201ENST00000507778 ITPKAP23677 461 aa6.58□□□□□ -1.36
HMGB1P28-201ENST00000507778 PSAPL1Q6NUJ1 521 aa6.58□□□□□ -1.36
HMGB1P28-201ENST00000507778 TTC9Q92623 222 aa6.58□□□□□ -1.36
HMGB1P28-201ENST00000507778 ACDQ96AP0 544 aa6.58□□□□□ -1.36
HMGB1P28-201ENST00000507778 FAM177BA6PVY3 158 aa6.57□□□□□ -1.36
HMGB1P28-201ENST00000507778 PTPRAP18433 802 aa6.57□□□□□ -1.36
HMGB1P28-201ENST00000507778 ERCC5P28715 1186 aaPredicted RBP6.57□□□□□ -1.36
HMGB1P28-201ENST00000507778 RPS26P11Q5JNZ5 115 aaPredicted RBP6.57□□□□□ -1.36
HMGB1P28-201ENST00000507778 METTL16Q86W50 562 aaKnown RBP6.57□□□□□ -1.36
HMGB1P28-201ENST00000507778 NT5DC4Q86YG4 428 aa6.57□□□□□ -1.36
HMGB1P28-201ENST00000507778 GALNT6Q8NCL4 622 aa6.57□□□□□ -1.36
HMGB1P28-201ENST00000507778 ANKRD24Q8TF21 1146 aa6.57□□□□□ -1.36
HMGB1P28-201ENST00000507778 NUDT8Q8WV74 236 aa6.57□□□□□ -1.36
HMGB1P28-201ENST00000507778 EDARADDQ8WWZ3 215 aa6.57□□□□□ -1.36
HMGB1P28-201ENST00000507778 BSNDQ8WZ55 320 aa6.57□□□□□ -1.36
HMGB1P28-201ENST00000507778 NOC4LQ9BVI4 516 aaKnown RBP6.57□□□□□ -1.36
HMGB1P28-201ENST00000507778 CEP44Q9C0F1 390 aa6.57□□□□□ -1.36
HMGB1P28-201ENST00000507778 TRIM33Q9UPN9 1127 aa6.57□□□□□ -1.36
HMGB1P28-201ENST00000507778 CCDC85BQ15834 202 aaPredicted RBP6.56□□□□□ -1.36
HMGB1P28-201ENST00000507778 HS2ST1Q7LGA3 356 aa6.56□□□□□ -1.36
HMGB1P28-201ENST00000507778 CACTIN-AS1Q8N1I8 211 aa6.56□□□□□ -1.36
HMGB1P28-201ENST00000507778 LACRTQ9GZZ8 138 aa6.56□□□□□ -1.36
HMGB1P28-201ENST00000507778 ADAM19Q9H013 955 aa6.56□□□□□ -1.36
HMGB1P28-201ENST00000507778 GGT7Q9UJ14 662 aa6.56□□□□□ -1.36
HMGB1P28-201ENST00000507778 STARD13Q9Y3M8 1113 aa6.56□□□□□ -1.36
HMGB1P28-201ENST00000507778 FAM181BA6NEQ2 426 aa6.55□□□□□ -1.36
HMGB1P28-201ENST00000507778 OIP5O43482 229 aa6.55□□□□□ -1.36
HMGB1P28-201ENST00000507778 SLURP2P0DP57 97 aa6.55□□□□□ -1.36
HMGB1P28-201ENST00000507778 BCRP11274 1271 aa6.55□□□□□ -1.36
HMGB1P28-201ENST00000507778 CDC27P30260 824 aa6.55□□□□□ -1.36
HMGB1P28-201ENST00000507778 GMPRP36959 345 aa6.55□□□□□ -1.36
HMGB1P28-201ENST00000507778 GDF6Q6KF10 455 aaPredicted RBP6.55□□□□□ -1.36
HMGB1P28-201ENST00000507778 KANK3Q6NY19 840 aa6.55□□□□□ -1.36
HMGB1P28-201ENST00000507778 C20orf204Q6ZNR8 217 aa6.55□□□□□ -1.36
HMGB1P28-201ENST00000507778 C1orf229Q6ZS94 237 aaPredicted RBP6.55□□□□□ -1.36
HMGB1P28-201ENST00000507778 SV2BQ7L1I2 683 aa6.55□□□□□ -1.36
HMGB1P28-201ENST00000507778 MUC3BQ9H195 1237 aa6.55□□□□□ -1.36
HMGB1P28-201ENST00000507778 ZNF576Q9H609 170 aa6.55□□□□□ -1.36
HMGB1P28-201ENST00000507778 JPH1Q9HDC5 661 aaPredicted RBP6.55□□□□□ -1.36
HMGB1P28-201ENST00000507778 LRRC4BQ9NT99 713 aa6.55□□□□□ -1.36
HMGB1P28-201ENST00000507778 STK17AQ9UEE5 414 aa6.55□□□□□ -1.36
HMGB1P28-201ENST00000507778 FBXO24O75426 580 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms