RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 EXOSC10Q01780 885 aaKnown RBP20.66■□□□□ 0.9
NUP54-205ENST00000507257 PLEKHO1Q53GL0 409 aaPredicted RBP20.66■□□□□ 0.9
NUP54-205ENST00000507257 RGS22Q8NE09 1264 aa20.66■□□□□ 0.9
NUP54-205ENST00000507257 ZNF274Q96GC6 653 aaPredicted RBP20.66■□□□□ 0.9
NUP54-205ENST00000507257 PNMA6AP0CW24 399 aaPredicted RBP20.66■□□□□ 0.9
NUP54-205ENST00000507257 CEBPZQ03701 1054 aaKnown RBP20.66■□□□□ 0.9
NUP54-205ENST00000507257 PROSER3Q2NL68 480 aa20.66■□□□□ 0.9
NUP54-205ENST00000507257 USHBP1Q8N6Y0 703 aa20.66■□□□□ 0.9
NUP54-205ENST00000507257 XPO4Q9C0E2 1151 aaKnown RBP20.66■□□□□ 0.9
NUP54-205ENST00000507257 IKBKBO14920 756 aa20.65■□□□□ 0.9
NUP54-205ENST00000507257 RNMTO43148 476 aaKnown RBP20.65■□□□□ 0.9
NUP54-205ENST00000507257 FAM69CQ0P6D2 419 aa20.65■□□□□ 0.9
NUP54-205ENST00000507257 NBPF6Q5VWK0 638 aa20.65■□□□□ 0.9
NUP54-205ENST00000507257 SYT10Q6XYQ8 523 aa20.65■□□□□ 0.9
NUP54-205ENST00000507257 ILDR1Q86SU0 546 aaPredicted RBP20.65■□□□□ 0.9
NUP54-205ENST00000507257 FCHSD1Q86WN1 690 aa20.65■□□□□ 0.9
NUP54-205ENST00000507257 NBPF4Q96M43 638 aa20.65■□□□□ 0.9
NUP54-205ENST00000507257 HAUS7Q99871 368 aa20.65■□□□□ 0.9
NUP54-205ENST00000507257 TSPYL1Q9H0U9 437 aa20.65■□□□□ 0.9
NUP54-205ENST00000507257 PCDHA7Q9UN72 937 aa20.65■□□□□ 0.9
NUP54-205ENST00000507257 NEDD4P46934 1319 aa20.65■□□□□ 0.9
NUP54-205ENST00000507257 YEATS4O95619 227 aa20.65■□□□□ 0.9
NUP54-205ENST00000507257 ABTB2Q8N961 1025 aa20.65■□□□□ 0.9
NUP54-205ENST00000507257 KCNG4Q8TDN1 519 aa20.65■□□□□ 0.9
NUP54-205ENST00000507257 BBXQ8WY36 941 aaPredicted RBP20.65■□□□□ 0.9
NUP54-205ENST00000507257 DSCC1Q9BVC3 393 aa20.65■□□□□ 0.9
NUP54-205ENST00000507257 FTOQ9C0B1 505 aaKnown RBP eCLIP20.65■□□□□ 0.9
NUP54-205ENST00000507257 DBNLQ9UJU6 430 aaKnown RBP20.65■□□□□ 0.9
NUP54-205ENST00000507257 PALLDQ8WX93 1383 aa20.64■□□□□ 0.9
NUP54-205ENST00000507257 NLRP12P59046 1061 aa20.64■□□□□ 0.89
NUP54-205ENST00000507257 TNNI3KQ59H18 835 aa20.64■□□□□ 0.89
NUP54-205ENST00000507257 ZNF530Q6P9A1 599 aaPredicted RBP20.64■□□□□ 0.89
NUP54-205ENST00000507257 STOX1Q6ZVD7 989 aa20.64■□□□□ 0.89
NUP54-205ENST00000507257 SDF4Q9BRK5 362 aa20.64■□□□□ 0.89
NUP54-205ENST00000507257 FPGT-TNNI3KV9GXZ4 949 aa20.64■□□□□ 0.89
NUP54-205ENST00000507257 MYO1BO43795 1136 aa20.63■□□□□ 0.89
NUP54-205ENST00000507257 PLA2G4AP47712 749 aa20.63■□□□□ 0.89
NUP54-205ENST00000507257 EVCP57679 992 aa20.63■□□□□ 0.89
NUP54-205ENST00000507257 ZRSR1Q15695 479 aaKnown RBP20.63■□□□□ 0.89
NUP54-205ENST00000507257 ARHGAP29Q52LW3 1261 aa20.63■□□□□ 0.89
NUP54-205ENST00000507257 TMC6Q7Z403 805 aa20.63■□□□□ 0.89
NUP54-205ENST00000507257 POLR3EQ9NVU0 708 aa20.63■□□□□ 0.89
NUP54-205ENST00000507257 ZKSCAN7Q9P0L1 754 aaPredicted RBP20.63■□□□□ 0.89
NUP54-205ENST00000507257 IFNKQ9P0W0 207 aa20.63■□□□□ 0.89
NUP54-205ENST00000507257 ORC3Q9UBD5 711 aaPredicted RBP20.63■□□□□ 0.89
NUP54-205ENST00000507257 IGKV5-2P06315 115 aa20.63■□□□□ 0.89
NUP54-205ENST00000507257 IRX5P78411 483 aaPredicted RBP20.63■□□□□ 0.89
NUP54-205ENST00000507257 PSME1Q06323 249 aa20.63■□□□□ 0.89
NUP54-205ENST00000507257 NCAPHQ15003 741 aa20.63■□□□□ 0.89
NUP54-205ENST00000507257 LINC00301Q8NCQ3 95 aa20.63■□□□□ 0.89
NUP54-205ENST00000507257 UBXN6Q9BZV1 441 aa20.63■□□□□ 0.89
NUP54-205ENST00000507257 HELLSQ9NRZ9 838 aa20.63■□□□□ 0.89
NUP54-205ENST00000507257 CARMIL3Q8ND23 1372 aa20.62■□□□□ 0.89
NUP54-205ENST00000507257 RGPD2P0DJD1 1756 aa20.62■□□□□ 0.89
NUP54-205ENST00000507257 DPCR1Q3MIW9 517 aa20.62■□□□□ 0.89
NUP54-205ENST00000507257 TEX35Q5T0J7 233 aa20.62■□□□□ 0.89
NUP54-205ENST00000507257 TMCO3Q6UWJ1 677 aa20.62■□□□□ 0.89
NUP54-205ENST00000507257 TMX1Q9H3N1 280 aa20.62■□□□□ 0.89
NUP54-205ENST00000507257 EID1Q9Y6B2 187 aa20.62■□□□□ 0.89
NUP54-205ENST00000507257 EFCAB8A8MWE9 144 aa20.61■□□□□ 0.89
NUP54-205ENST00000507257 SMC2O95347 1197 aa20.61■□□□□ 0.89
NUP54-205ENST00000507257 RFX5P48382 616 aaPredicted RBP20.61■□□□□ 0.89
NUP54-205ENST00000507257 KBTBD3Q8NAB2 608 aa20.61■□□□□ 0.89
NUP54-205ENST00000507257 UBXN4Q92575 508 aa20.61■□□□□ 0.89
NUP54-205ENST00000507257 SIL1Q9H173 461 aa20.61■□□□□ 0.89
NUP54-205ENST00000507257 DNAI1Q9UI46 699 aa20.61■□□□□ 0.89
NUP54-205ENST00000507257 CAMTA1Q9Y6Y1 1673 aa20.61■□□□□ 0.89
NUP54-205ENST00000507257 NEURL1BA8MQ27 555 aa20.61■□□□□ 0.89
NUP54-205ENST00000507257 TADA3O75528 432 aa20.61■□□□□ 0.89
NUP54-205ENST00000507257 CCDC158Q5M9N0 1113 aa20.61■□□□□ 0.89
NUP54-205ENST00000507257 EDC3Q96F86 508 aaKnown RBP20.61■□□□□ 0.89
NUP54-205ENST00000507257 SLC26A8Q96RN1 970 aa20.61■□□□□ 0.89
NUP54-205ENST00000507257 ST7Q9NRC1 585 aa20.61■□□□□ 0.89
NUP54-205ENST00000507257 NDUFA8P51970 172 aa20.6■□□□□ 0.89
NUP54-205ENST00000507257 NEXNQ0ZGT2 675 aa20.6■□□□□ 0.89
NUP54-205ENST00000507257 PDIA6Q15084 440 aa20.6■□□□□ 0.89
NUP54-205ENST00000507257 TRIM65Q6PJ69 517 aa20.6■□□□□ 0.89
NUP54-205ENST00000507257 DNAJC2Q99543 621 aaKnown RBP20.6■□□□□ 0.89
NUP54-205ENST00000507257 CBFA2T2O43439 604 aa20.59■□□□□ 0.89
NUP54-205ENST00000507257 SLC3A2P08195 630 aaKnown RBP20.59■□□□□ 0.89
NUP54-205ENST00000507257 PDIA3P30101 505 aaKnown RBP20.59■□□□□ 0.89
NUP54-205ENST00000507257 APOBRQ0VD83 1088 aa20.59■□□□□ 0.89
NUP54-205ENST00000507257 GCKRQ14397 625 aa20.59■□□□□ 0.89
NUP54-205ENST00000507257 LRRFIP1Q32MZ4 808 aaKnown RBP20.59■□□□□ 0.89
NUP54-205ENST00000507257 RABL6Q3YEC7 729 aaPredicted RBP20.59■□□□□ 0.89
NUP54-205ENST00000507257 MPRIPQ6WCQ1 1025 aa20.59■□□□□ 0.89
NUP54-205ENST00000507257 BRAPQ7Z569 592 aa20.59■□□□□ 0.89
NUP54-205ENST00000507257 SPEF2Q9C093 1822 aa20.59■□□□□ 0.89
NUP54-205ENST00000507257 PXDNQ92626 1479 aa20.59■□□□□ 0.89
NUP54-205ENST00000507257 MUM1L1Q5H9M0 696 aa20.59■□□□□ 0.89
NUP54-205ENST00000507257 LRRN4CLQ8ND94 238 aa20.59■□□□□ 0.89
NUP54-205ENST00000507257 A0A087WWV3 80 aa20.58■□□□□ 0.88
NUP54-205ENST00000507257 PTPN12Q05209 780 aaKnown RBP20.58■□□□□ 0.88
NUP54-205ENST00000507257 C1orf141Q5JVX7 400 aa20.58■□□□□ 0.88
NUP54-205ENST00000507257 CCDC129Q6ZRS4 1044 aa20.58■□□□□ 0.88
NUP54-205ENST00000507257 SLIT3O75094 1523 aa20.58■□□□□ 0.88
NUP54-205ENST00000507257 A0A1B0GVL5 298 aa20.57■□□□□ 0.88
NUP54-205ENST00000507257 FANCCQ00597 558 aa20.57■□□□□ 0.88
NUP54-205ENST00000507257 STK38Q15208 465 aa20.57■□□□□ 0.88
NUP54-205ENST00000507257 HOMER1Q86YM7 354 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms