RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 C15orf52Q6ZUT6 534 aaKnown RBP22.63■■□□□ 1.21
NPHP4-210ENST00000506941 L3MBTL3Q96JM7 780 aaPredicted RBP22.63■■□□□ 1.21
NPHP4-210ENST00000506941 FBXO3Q9UK99 471 aa22.63■■□□□ 1.21
NPHP4-210ENST00000506941 GJA3Q9Y6H8 435 aa22.63■■□□□ 1.21
NPHP4-210ENST00000506941 PDE8BO95263 885 aa22.62■■□□□ 1.21
NPHP4-210ENST00000506941 UBE4AQ14139 1066 aa22.62■■□□□ 1.21
NPHP4-210ENST00000506941 CIAPIN1Q6FI81 312 aa22.62■■□□□ 1.21
NPHP4-210ENST00000506941 CEP85Q6P2H3 762 aa22.62■■□□□ 1.21
NPHP4-210ENST00000506941 SSH3Q8TE77 659 aa22.62■■□□□ 1.21
NPHP4-210ENST00000506941 ADAMTSL1Q8N6G6 1762 aa22.61■■□□□ 1.21
NPHP4-210ENST00000506941 G3V3G9 751 aa22.6■■□□□ 1.21
NPHP4-210ENST00000506941 PSMD14O00487 310 aa22.6■■□□□ 1.21
NPHP4-210ENST00000506941 IL15P40933 162 aaPredicted RBP22.6■■□□□ 1.21
NPHP4-210ENST00000506941 DCAF8Q5TAQ9 597 aa22.6■■□□□ 1.21
NPHP4-210ENST00000506941 VEGFAP15692 232 aaPredicted RBP22.59■■□□□ 1.21
NPHP4-210ENST00000506941 FGFR2P21802 821 aa22.59■■□□□ 1.21
NPHP4-210ENST00000506941 SCNN1DP51172 638 aa22.59■■□□□ 1.21
NPHP4-210ENST00000506941 COA1Q9GZY4 146 aa22.59■■□□□ 1.21
NPHP4-210ENST00000506941 TNIP1Q15025 636 aa22.58■■□□□ 1.21
NPHP4-210ENST00000506941 PODNQ7Z5L7 613 aa22.58■■□□□ 1.21
NPHP4-210ENST00000506941 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.58■■□□□ 1.21
NPHP4-210ENST00000506941 GMPSP49915 693 aaPredicted RBP22.57■■□□□ 1.2
NPHP4-210ENST00000506941 PUM3Q15397 648 aaKnown RBP22.57■■□□□ 1.2
NPHP4-210ENST00000506941 CHMP4BQ9H444 224 aaKnown RBP22.57■■□□□ 1.2
NPHP4-210ENST00000506941 GYG1P46976 350 aa22.56■■□□□ 1.2
NPHP4-210ENST00000506941 ZNF804AQ7Z570 1209 aa22.56■■□□□ 1.2
NPHP4-210ENST00000506941 SIRT2Q8IXJ6 389 aa22.56■■□□□ 1.2
NPHP4-210ENST00000506941 FAM84BQ96KN1 310 aaPredicted RBP22.56■■□□□ 1.2
NPHP4-210ENST00000506941 CD209Q9NNX6 404 aa22.56■■□□□ 1.2
NPHP4-210ENST00000506941 CEP126Q9P2H0 1117 aa22.56■■□□□ 1.2
NPHP4-210ENST00000506941 ZBTB12Q9Y330 459 aaPredicted RBP22.56■■□□□ 1.2
NPHP4-210ENST00000506941 ZNF609O15014 1411 aa22.56■■□□□ 1.2
NPHP4-210ENST00000506941 VIL1P09327 827 aaKnown RBP22.55■■□□□ 1.2
NPHP4-210ENST00000506941 TFCP2Q12800 502 aa22.55■■□□□ 1.2
NPHP4-210ENST00000506941 HACL1Q9UJ83 578 aa22.55■■□□□ 1.2
NPHP4-210ENST00000506941 IQCA1LA6NCM1 817 aa22.54■■□□□ 1.2
NPHP4-210ENST00000506941 USP17L3A6NCW0 530 aa22.54■■□□□ 1.2
NPHP4-210ENST00000506941 USP17L4A6NCW7 530 aa22.54■■□□□ 1.2
NPHP4-210ENST00000506941 IL1R1P14778 569 aa22.54■■□□□ 1.2
NPHP4-210ENST00000506941 EPS15P42566 896 aa22.54■■□□□ 1.2
NPHP4-210ENST00000506941 USP17L1Q7RTZ2 530 aa22.54■■□□□ 1.2
NPHP4-210ENST00000506941 CRBNQ96SW2 442 aa22.54■■□□□ 1.2
NPHP4-210ENST00000506941 TAF1DQ9H5J8 278 aaPredicted RBP22.54■■□□□ 1.2
NPHP4-210ENST00000506941 GPRC5DQ9NZD1 345 aa22.54■■□□□ 1.2
NPHP4-210ENST00000506941 POLR2AP24928 1970 aaKnown RBP22.54■■□□□ 1.2
NPHP4-210ENST00000506941 SHTN1A0MZ66 631 aa22.53■■□□□ 1.2
NPHP4-210ENST00000506941 SASH1O94885 1247 aa22.53■■□□□ 1.2
NPHP4-210ENST00000506941 G3BP1Q13283 466 aaKnown RBP eCLIP22.53■■□□□ 1.2
NPHP4-210ENST00000506941 ATP2B3Q16720 1220 aa22.53■■□□□ 1.2
NPHP4-210ENST00000506941 FBXO33Q7Z6M2 555 aa22.53■■□□□ 1.2
NPHP4-210ENST00000506941 RPAP2Q8IXW5 612 aaPredicted RBP22.53■■□□□ 1.2
NPHP4-210ENST00000506941 LPIN2Q92539 896 aa22.53■■□□□ 1.2
NPHP4-210ENST00000506941 NOP58Q9Y2X3 529 aaKnown RBP22.53■■□□□ 1.2
NPHP4-210ENST00000506941 SUPT16HQ9Y5B9 1047 aaKnown RBP22.53■■□□□ 1.2
NPHP4-210ENST00000506941 SURF6O75683 361 aaKnown RBP22.52■■□□□ 1.2
NPHP4-210ENST00000506941 IFIT1P09914 478 aaKnown RBP22.52■■□□□ 1.2
NPHP4-210ENST00000506941 SLC5A1P13866 664 aa22.52■■□□□ 1.2
NPHP4-210ENST00000506941 HIBADHP31937 336 aaKnown RBP22.52■■□□□ 1.2
NPHP4-210ENST00000506941 EPHX2P34913 555 aa22.52■■□□□ 1.2
NPHP4-210ENST00000506941 DACT2Q5SW24 774 aa22.52■■□□□ 1.2
NPHP4-210ENST00000506941 MXD3Q9BW11 206 aa22.52■■□□□ 1.2
NPHP4-210ENST00000506941 POTEIP0CG38 1075 aa22.51■■□□□ 1.19
NPHP4-210ENST00000506941 POTEJP0CG39 1038 aa22.51■■□□□ 1.19
NPHP4-210ENST00000506941 LMOD1P29536 600 aaPredicted RBP22.51■■□□□ 1.19
NPHP4-210ENST00000506941 BCAMP50895 628 aa22.51■■□□□ 1.19
NPHP4-210ENST00000506941 RSBN1LQ6PCB5 846 aaPredicted RBP22.51■■□□□ 1.19
NPHP4-210ENST00000506941 FBXW7Q969H0 707 aa22.51■■□□□ 1.19
NPHP4-210ENST00000506941 GMLQ99445 158 aa22.51■■□□□ 1.19
NPHP4-210ENST00000506941 RPS12P25398 132 aaKnown RBP22.5■■□□□ 1.19
NPHP4-210ENST00000506941 ADORA1P30542 326 aa22.5■■□□□ 1.19
NPHP4-210ENST00000506941 GTF2IP78347 998 aa22.5■■□□□ 1.19
NPHP4-210ENST00000506941 STRIP1Q5VSL9 837 aa22.5■■□□□ 1.19
NPHP4-210ENST00000506941 TTLL5Q6EMB2 1281 aa22.5■■□□□ 1.19
NPHP4-210ENST00000506941 TDRD7Q8NHU6 1098 aaKnown RBP22.5■■□□□ 1.19
NPHP4-210ENST00000506941 DPF2Q92785 391 aa22.5■■□□□ 1.19
NPHP4-210ENST00000506941 ECM29Q5VYK3 1845 aa22.5■■□□□ 1.19
NPHP4-210ENST00000506941 TOMM70O94826 608 aa22.49■■□□□ 1.19
NPHP4-210ENST00000506941 MICALL2Q8IY33 904 aa22.49■■□□□ 1.19
NPHP4-210ENST00000506941 C16orf71Q8IYS4 520 aaPredicted RBP22.49■■□□□ 1.19
NPHP4-210ENST00000506941 CNOT7Q9UIV1 285 aaKnown RBP22.49■■□□□ 1.19
NPHP4-210ENST00000506941 IQSEC3Q9UPP2 1182 aaPredicted RBP22.49■■□□□ 1.19
NPHP4-210ENST00000506941 JAG2Q9Y219 1238 aa22.49■■□□□ 1.19
NPHP4-210ENST00000506941 EXOC6BQ9Y2D4 811 aa22.49■■□□□ 1.19
NPHP4-210ENST00000506941 AKAP11Q9UKA4 1901 aa22.49■■□□□ 1.19
NPHP4-210ENST00000506941 COL1A1P02452 1464 aaPredicted RBP22.48■■□□□ 1.19
NPHP4-210ENST00000506941 A0A1B0GUL7 405 aa22.48■■□□□ 1.19
NPHP4-210ENST00000506941 TIMM10P62072 90 aa22.48■■□□□ 1.19
NPHP4-210ENST00000506941 OS9Q13438 667 aaPredicted RBP22.48■■□□□ 1.19
NPHP4-210ENST00000506941 CAVIN4Q5BKX8 364 aa22.48■■□□□ 1.19
NPHP4-210ENST00000506941 VPS37DQ86XT2 251 aa22.48■■□□□ 1.19
NPHP4-210ENST00000506941 AGBL3Q8NEM8 1001 aa22.48■■□□□ 1.19
NPHP4-210ENST00000506941 HMMRO75330 724 aa22.47■■□□□ 1.19
NPHP4-210ENST00000506941 CERS5Q8N5B7 392 aa22.47■■□□□ 1.19
NPHP4-210ENST00000506941 RBM46Q8TBY0 533 aaKnown RBP22.47■■□□□ 1.19
NPHP4-210ENST00000506941 AKAP2Q9Y2D5 859 aa22.47■■□□□ 1.19
NPHP4-210ENST00000506941 FAM205AQ6ZU69 1335 aa22.47■■□□□ 1.19
NPHP4-210ENST00000506941 MYO5AQ9Y4I1 1855 aaKnown RBP22.46■■□□□ 1.19
NPHP4-210ENST00000506941 EGFRP00533 1210 aa22.46■■□□□ 1.19
NPHP4-210ENST00000506941 EAPPQ56P03 285 aaPredicted RBP22.46■■□□□ 1.19
NPHP4-210ENST00000506941 TRPM4Q8TD43 1214 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms