RNA–Protein interactions for RNA: ENST00000503468.5

NEDD4-204, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 6,339 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-204ENST00000503468 CC2D2BQ6DHV5 1058 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 TMEM132EQ6IEE7 984 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 HSCBQ8IWL3 235 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 API5Q9BZZ5 524 aaKnown RBP3.38□□□□□ -1.87
NEDD4-204ENST00000503468 PPP2R5BQ15173 497 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 ZNF568Q3ZCX4 644 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 ATL3Q6DD88 541 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 CERS3Q8IU89 383 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 L3MBTL3Q96JM7 780 aaPredicted RBP3.38□□□□□ -1.87
NEDD4-204ENST00000503468 IDI2Q9BXS1 227 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 IGSF5Q9NSI5 407 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 HPSEQ9Y251 543 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 APBB1O00213 710 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 HSP90B1P14625 803 aaKnown RBP3.38□□□□□ -1.87
NEDD4-204ENST00000503468 DHX8Q14562 1220 aaKnown RBP3.38□□□□□ -1.87
NEDD4-204ENST00000503468 HSP90AB2PQ58FF8 381 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 MARCH10Q8NA82 808 aaPredicted RBP3.38□□□□□ -1.87
NEDD4-204ENST00000503468 PMFBP1Q8TBY8 1022 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 STON2Q8WXE9 905 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 CLUAP1Q96AJ1 413 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 TANGO6Q9C0B7 1094 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 PSMA3P25788 255 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 LIFRP42702 1097 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 DMTNQ08495 405 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 FAM50AQ14320 339 aaKnown RBP3.38□□□□□ -1.87
NEDD4-204ENST00000503468 NME9Q86XW9 330 aa3.38□□□□□ -1.87
NEDD4-204ENST00000503468 ZCCHC17Q9NP64 241 aaKnown RBP3.38□□□□□ -1.87
NEDD4-204ENST00000503468 HNRNPH3P31942 346 aaKnown RBP3.37□□□□□ -1.87
NEDD4-204ENST00000503468 NUCB2P80303 420 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 KSR2Q6VAB6 950 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 FTSJ3Q8IY81 847 aaKnown RBP3.37□□□□□ -1.87
NEDD4-204ENST00000503468 ST6GALNAC4Q9H4F1 302 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 CCDC39Q9UFE4 941 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 GRIN2DO15399 1336 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 GOLGA6L6A8MZA4 724 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 RBL2Q08999 1139 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 ARMC3Q5W041 872 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 GOLGA6L1Q8N7Z2 621 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 C1orf131Q8NDD1 294 aaKnown RBP3.37□□□□□ -1.87
NEDD4-204ENST00000503468 DPF3Q92784 378 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 ZNF622Q969S3 477 aaKnown RBP eCLIP3.37□□□□□ -1.873e-6■■■□□ 16.2
NEDD4-204ENST00000503468 POLR3GLQ9BT43 218 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 PRDM4Q9UKN5 801 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 ZDHHC9Q9Y397 364 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 SYNGAP1Q96PV0 1343 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 FRMD3A2A2Y4 597 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 PHF14O94880 888 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 RABEP1Q15276 862 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 PLEKHM2Q8IWE5 1019 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 CEP120Q8N960 986 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 DAGLBQ8NCG7 672 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 FAM13BQ9NYF5 915 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 ZKSCAN5Q9Y2L8 839 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 GREB1Q4ZG55 1949 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 TRAFD1O14545 582 aaPredicted RBP3.37□□□□□ -1.87
NEDD4-204ENST00000503468 SASH1O94885 1247 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 GPS2Q13227 327 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 ENGASEQ8NFI3 743 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 C19orf43Q9BQ61 176 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 SRCIN1Q9C0H9 1055 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 NLRC5Q86WI3 1866 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 CHD9Q3L8U1 2897 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 CXorf51AA0A1B0GTR3 108 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 NASPP49321 788 aaPredicted RBP3.37□□□□□ -1.87
NEDD4-204ENST00000503468 TAF7Q15545 349 aaPredicted RBP3.37□□□□□ -1.87
NEDD4-204ENST00000503468 KLHL40Q2TBA0 621 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 POGKQ9P215 609 aa3.37□□□□□ -1.87
NEDD4-204ENST00000503468 NOL7Q9UMY1 257 aaKnown RBP3.37□□□□□ -1.87
NEDD4-204ENST00000503468 SEC23AQ15436 765 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 ZNF790Q6PG37 636 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 MOXD1Q6UVY6 613 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 CRIPAKQ8N1N5 446 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 RIOK1Q9BRS2 568 aaKnown RBP3.36□□□□□ -1.87
NEDD4-204ENST00000503468 YY1AP1Q9H869 796 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 DENND4AQ7Z401 1863 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 UBN2Q6ZU65 1347 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 MFAP1P55081 439 aaKnown RBP3.36□□□□□ -1.87
NEDD4-204ENST00000503468 NEXNQ0ZGT2 675 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 SYCP1Q15431 976 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 IFNLR1Q8IU57 520 aaPredicted RBP3.36□□□□□ -1.87
NEDD4-204ENST00000503468 RHOBTB2Q9BYZ6 727 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 DDX19BQ9UMR2 479 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 PTPRDP23468 1912 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 SGSM2O43147 1006 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 CCT4P50991 539 aaKnown RBP3.36□□□□□ -1.87
NEDD4-204ENST00000503468 UBE3CQ15386 1083 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 MEA1Q16626 185 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 PPP4R3BQ5MIZ7 849 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 CEP89Q96ST8 783 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 EFCC1Q9HA90 598 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 KIAA1217Q5T5P2 1943 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 FAM83GA6ND36 823 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 NRDCO43847 1150 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 TBC1D12O60347 775 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 PLBD2Q8NHP8 589 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 EXOC6Q8TAG9 804 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 CRAMP1Q96RY5 1269 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 NBPF3Q9H094 633 aa3.36□□□□□ -1.87
NEDD4-204ENST00000503468 DBF4Q9UBU7 674 aaPredicted RBP3.36□□□□□ -1.87
NEDD4-204ENST00000503468 RAB11FIP3O75154 756 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms