RNA–Protein interactions for RNA: ENST00000497488.1

BRCA1-224, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-224ENST00000497488 ALG1L2C9J202 215 aa7.98□□□□□ -1.13
BRCA1-224ENST00000497488 MAFGO15525 162 aa7.98□□□□□ -1.13
BRCA1-224ENST00000497488 ALDH1L1O75891 902 aa7.98□□□□□ -1.13
BRCA1-224ENST00000497488 TRIM37O94972 964 aa7.98□□□□□ -1.13
BRCA1-224ENST00000497488 FAM160A1Q05DH4 1040 aa7.98□□□□□ -1.13
BRCA1-224ENST00000497488 HDAC1Q13547 482 aaPredicted RBP7.98□□□□□ -1.13
BRCA1-224ENST00000497488 FOXD4L6Q3SYB3 417 aaPredicted RBP7.98□□□□□ -1.13
BRCA1-224ENST00000497488 MTERF2Q49AM1 385 aa7.98□□□□□ -1.13
BRCA1-224ENST00000497488 PDE12Q6L8Q7 609 aaKnown RBP7.98□□□□□ -1.13
BRCA1-224ENST00000497488 PRPF40BQ6NWY9 871 aaKnown RBP7.98□□□□□ -1.13
BRCA1-224ENST00000497488 FOXD4L3Q6VB84 417 aaPredicted RBP7.98□□□□□ -1.13
BRCA1-224ENST00000497488 DDX42Q86XP3 938 aaKnown RBP eCLIP7.98□□□□□ -1.13
BRCA1-224ENST00000497488 SLITRK4Q8IW52 837 aa7.98□□□□□ -1.13
BRCA1-224ENST00000497488 NME8Q8N427 588 aa7.98□□□□□ -1.13
BRCA1-224ENST00000497488 PNISRQ8TF01 805 aaKnown RBP7.98□□□□□ -1.13
BRCA1-224ENST00000497488 ANKRD24Q8TF21 1146 aa7.98□□□□□ -1.13
BRCA1-224ENST00000497488 CHAC2Q8WUX2 184 aa7.98□□□□□ -1.13
BRCA1-224ENST00000497488 NKD1Q969G9 470 aa7.98□□□□□ -1.13
BRCA1-224ENST00000497488 IL17RAQ96F46 866 aa7.98□□□□□ -1.13
BRCA1-224ENST00000497488 SLC6A16Q9GZN6 736 aa7.98□□□□□ -1.13
BRCA1-224ENST00000497488 PNMA2Q9UL42 364 aa7.98□□□□□ -1.13
BRCA1-224ENST00000497488 PPT2Q9UMR5 302 aa7.98□□□□□ -1.13
BRCA1-224ENST00000497488 PARP3Q9Y6F1 533 aa7.98□□□□□ -1.13
BRCA1-224ENST00000497488 VARSP26640 1264 aaKnown RBP7.97□□□□□ -1.13
BRCA1-224ENST00000497488 PMLP29590 882 aa7.97□□□□□ -1.13
BRCA1-224ENST00000497488 CRKP46108 304 aa7.97□□□□□ -1.13
BRCA1-224ENST00000497488 GIPRP48546 466 aa7.97□□□□□ -1.13
BRCA1-224ENST00000497488 EIF6P56537 245 aaKnown RBP7.97□□□□□ -1.13
BRCA1-224ENST00000497488 TTF1Q15361 905 aaPredicted RBP7.97□□□□□ -1.13
BRCA1-224ENST00000497488 THNSL2Q86YJ6 484 aa7.97□□□□□ -1.13
BRCA1-224ENST00000497488 GLIS3Q8NEA6 775 aa7.97□□□□□ -1.13
BRCA1-224ENST00000497488 CNKSR1Q969H4 720 aa7.97□□□□□ -1.13
BRCA1-224ENST00000497488 MTRQ99707 1265 aa7.97□□□□□ -1.13
BRCA1-224ENST00000497488 ESYT1Q9BSJ8 1104 aa7.97□□□□□ -1.13
BRCA1-224ENST00000497488 RBSNQ9H1K0 784 aa7.97□□□□□ -1.13
BRCA1-224ENST00000497488 GNL3LQ9NVN8 582 aaKnown RBP7.97□□□□□ -1.13
BRCA1-224ENST00000497488 PPM1HQ9ULR3 514 aa7.97□□□□□ -1.13
BRCA1-224ENST00000497488 LDHAP00338 332 aaKnown RBP7.96□□□□□ -1.14
BRCA1-224ENST00000497488 PF4P02776 101 aa7.96□□□□□ -1.14
BRCA1-224ENST00000497488 KRT18P05783 430 aaKnown RBP7.96□□□□□ -1.14
BRCA1-224ENST00000497488 FSHRP23945 695 aa7.96□□□□□ -1.14
BRCA1-224ENST00000497488 ADD1P35611 737 aaKnown RBP7.96□□□□□ -1.14
BRCA1-224ENST00000497488 STAT3P40763 770 aa7.96□□□□□ -1.14
BRCA1-224ENST00000497488 SEPT6Q14141 434 aa7.96□□□□□ -1.14
BRCA1-224ENST00000497488 SAFB2Q14151 953 aaKnown RBP eCLIP7.96□□□□□ -1.143e-6■□□□□ 8.3
BRCA1-224ENST00000497488 FAM50AQ14320 339 aaKnown RBP7.96□□□□□ -1.14
BRCA1-224ENST00000497488 PPP2R5AQ15172 486 aa7.96□□□□□ -1.14
BRCA1-224ENST00000497488 MAP3K11Q16584 847 aa7.96□□□□□ -1.14
BRCA1-224ENST00000497488 CTC1Q2NKJ3 1217 aa7.96□□□□□ -1.14
BRCA1-224ENST00000497488 TM4SF20Q53R12 229 aa7.96□□□□□ -1.14
BRCA1-224ENST00000497488 SNAP47Q5SQN1 464 aa7.96□□□□□ -1.14
BRCA1-224ENST00000497488 IFFO2Q5TF58 517 aa7.96□□□□□ -1.14
BRCA1-224ENST00000497488 ZNF516Q92618 1163 aa7.96□□□□□ -1.14
BRCA1-224ENST00000497488 ARNT2Q9HBZ2 717 aa7.96□□□□□ -1.14
BRCA1-224ENST00000497488 FNDC3AQ9Y2H6 1198 aaKnown RBP7.96□□□□□ -1.14
BRCA1-224ENST00000497488 KDM2BQ8NHM5 1336 aa7.96□□□□□ -1.14
BRCA1-224ENST00000497488 CCDC189A1A4V9 331 aa7.95□□□□□ -1.14
BRCA1-224ENST00000497488 TGFBR3LH3BV60 316 aa7.95□□□□□ -1.14
BRCA1-224ENST00000497488 DIAPH1O60610 1272 aaKnown RBP7.95□□□□□ -1.14
BRCA1-224ENST00000497488 RGS20O76081 388 aa7.95□□□□□ -1.14
BRCA1-224ENST00000497488 FXNQ16595 210 aa7.95□□□□□ -1.14
BRCA1-224ENST00000497488 SV2BQ7L1I2 683 aa7.95□□□□□ -1.14
BRCA1-224ENST00000497488 SAMD3Q8N6K7 520 aa7.95□□□□□ -1.14
BRCA1-224ENST00000497488 GOLM1Q8NBJ4 401 aa7.95□□□□□ -1.14
BRCA1-224ENST00000497488 MFSD3Q96ES6 412 aa7.95□□□□□ -1.14
BRCA1-224ENST00000497488 MPHOSPH6Q99547 160 aaKnown RBP7.95□□□□□ -1.14
BRCA1-224ENST00000497488 ELP3Q9H9T3 547 aa7.95□□□□□ -1.14
BRCA1-224ENST00000497488 PPP4R2Q9NY27 417 aa7.95□□□□□ -1.14
BRCA1-224ENST00000497488 TLR6Q9Y2C9 796 aa7.95□□□□□ -1.14
BRCA1-224ENST00000497488 FCF1Q9Y324 198 aaKnown RBP7.95□□□□□ -1.14
BRCA1-224ENST00000497488 LAS1LQ9Y4W2 734 aaKnown RBP7.95□□□□□ -1.14
BRCA1-224ENST00000497488 LIG3P49916 1009 aa7.94□□□□□ -1.14
BRCA1-224ENST00000497488 LMNB2Q03252 620 aa7.94□□□□□ -1.14
BRCA1-224ENST00000497488 KCNC4Q03721 635 aa7.94□□□□□ -1.14
BRCA1-224ENST00000497488 CAMK2GQ13555 558 aaPredicted RBP7.94□□□□□ -1.14
BRCA1-224ENST00000497488 DHX8Q14562 1220 aaKnown RBP7.94□□□□□ -1.14
BRCA1-224ENST00000497488 LRRC41Q15345 812 aa7.94□□□□□ -1.14
BRCA1-224ENST00000497488 TRIP4Q15650 581 aaPredicted RBP7.94□□□□□ -1.14
BRCA1-224ENST00000497488 KIAA0319Q5VV43 1072 aa7.94□□□□□ -1.14
BRCA1-224ENST00000497488 FHDC1Q9C0D6 1143 aaPredicted RBP7.94□□□□□ -1.14
BRCA1-224ENST00000497488 CHRDQ9H2X0 955 aa7.94□□□□□ -1.14
BRCA1-224ENST00000497488 CAAP1Q9H8G2 361 aa7.94□□□□□ -1.14
BRCA1-224ENST00000497488 TMEM63CQ9P1W3 806 aa7.94□□□□□ -1.14
BRCA1-224ENST00000497488 PFDN2Q9UHV9 154 aa7.94□□□□□ -1.14
BRCA1-224ENST00000497488 MCM8Q9UJA3 840 aa7.94□□□□□ -1.14
BRCA1-224ENST00000497488 TRAK1Q9UPV9 953 aa7.94□□□□□ -1.14
BRCA1-224ENST00000497488 EREGO14944 169 aa7.93□□□□□ -1.14
BRCA1-224ENST00000497488 WDHD1O75717 1129 aaPredicted RBP7.93□□□□□ -1.14
BRCA1-224ENST00000497488 MYCLP1P12525 358 aaPredicted RBP7.93□□□□□ -1.14
BRCA1-224ENST00000497488 VPS72Q15906 364 aa7.93□□□□□ -1.14
BRCA1-224ENST00000497488 C21orf62-AS1Q17RA5 79 aa7.93□□□□□ -1.14
BRCA1-224ENST00000497488 SEZ6Q53EL9 994 aa7.93□□□□□ -1.14
BRCA1-224ENST00000497488 SYCP2LQ5T4T6 812 aa7.93□□□□□ -1.14
BRCA1-224ENST00000497488 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.93□□□□□ -1.14
BRCA1-224ENST00000497488 FAM196AQ6ZSG2 479 aa7.93□□□□□ -1.14
BRCA1-224ENST00000497488 SPATC1Q76KD6 591 aa7.93□□□□□ -1.14
BRCA1-224ENST00000497488 OR6P1Q8NGX9 317 aa7.93□□□□□ -1.14
BRCA1-224ENST00000497488 CDK15Q96Q40 435 aa7.93□□□□□ -1.14
BRCA1-224ENST00000497488 IL21Q9HBE4 155 aa7.93□□□□□ -1.14
BRCA1-224ENST00000497488 UBAP1LF5GYI3 381 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms