RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 CAPNS2Q96L46 248 aa16.13■□□□□ 0.17
PTPRF-214ENST00000496043 GMLQ99445 158 aa16.13■□□□□ 0.17
PTPRF-214ENST00000496043 CCER2I3L3R5 266 aa16.12■□□□□ 0.17
PTPRF-214ENST00000496043 FOXN1O15353 648 aa16.12■□□□□ 0.17
PTPRF-214ENST00000496043 GRM1Q13255 1194 aa16.12■□□□□ 0.17
PTPRF-214ENST00000496043 SCARF1Q14162 830 aa16.12■□□□□ 0.17
PTPRF-214ENST00000496043 STRIP1Q5VSL9 837 aa16.12■□□□□ 0.17
PTPRF-214ENST00000496043 CYP4F22Q6NT55 531 aa16.12■□□□□ 0.17
PTPRF-214ENST00000496043 TXNRD3Q86VQ6 643 aa16.12■□□□□ 0.17
PTPRF-214ENST00000496043 HHIPL1Q96JK4 782 aa16.12■□□□□ 0.17
PTPRF-214ENST00000496043 CTCFP49711 727 aaPredicted RBP16.11■□□□□ 0.17
PTPRF-214ENST00000496043 TAF7LQ5H9L4 462 aa16.11■□□□□ 0.17
PTPRF-214ENST00000496043 EPHA10Q5JZY3 1008 aa16.11■□□□□ 0.17
PTPRF-214ENST00000496043 LDHAL6AQ6ZMR3 332 aa16.11■□□□□ 0.17
PTPRF-214ENST00000496043 SULF1Q8IWU6 871 aa16.11■□□□□ 0.17
PTPRF-214ENST00000496043 TNS4Q8IZW8 715 aa16.11■□□□□ 0.17
PTPRF-214ENST00000496043 FBXW7Q969H0 707 aa16.11■□□□□ 0.17
PTPRF-214ENST00000496043 TAF5LO75529 589 aa16.1■□□□□ 0.17
PTPRF-214ENST00000496043 MAP2K2P36507 400 aa16.1■□□□□ 0.17
PTPRF-214ENST00000496043 MMP14P50281 582 aa16.1■□□□□ 0.17
PTPRF-214ENST00000496043 DACT2Q5SW24 774 aa16.1■□□□□ 0.17
PTPRF-214ENST00000496043 TTLL5Q6EMB2 1281 aa16.1■□□□□ 0.17
PTPRF-214ENST00000496043 OGFOD1Q8N543 542 aa16.1■□□□□ 0.17
PTPRF-214ENST00000496043 C2orf69Q8N8R5 385 aa16.1■□□□□ 0.17
PTPRF-214ENST00000496043 HELBQ8NG08 1087 aaPredicted RBP16.1■□□□□ 0.17
PTPRF-214ENST00000496043 SSH1Q8WYL5 1049 aa16.1■□□□□ 0.17
PTPRF-214ENST00000496043 MYOZ2Q9NPC6 264 aa16.1■□□□□ 0.17
PTPRF-214ENST00000496043 PTPRCP08575 1304 aa16.1■□□□□ 0.17
PTPRF-214ENST00000496043 DLK2Q6UY11 383 aa16.09■□□□□ 0.17
PTPRF-214ENST00000496043 CDCA7LQ96GN5 454 aa16.09■□□□□ 0.17
PTPRF-214ENST00000496043 ZNF594Q96JF6 807 aaPredicted RBP16.09■□□□□ 0.17
PTPRF-214ENST00000496043 BEGAINQ9BUH8 593 aa16.09■□□□□ 0.17
PTPRF-214ENST00000496043 PRDM10Q9NQV6 1147 aa16.09■□□□□ 0.17
PTPRF-214ENST00000496043 CNNM1Q9NRU3 951 aa16.09■□□□□ 0.17
PTPRF-214ENST00000496043 GGA3Q9NZ52 723 aa16.09■□□□□ 0.17
PTPRF-214ENST00000496043 MYO3BQ8WXR4 1341 aa16.09■□□□□ 0.17
PTPRF-214ENST00000496043 MYH3P11055 1940 aa16.09■□□□□ 0.17
PTPRF-214ENST00000496043 ADM5C9JUS6 153 aa16.08■□□□□ 0.16
PTPRF-214ENST00000496043 PLIN1O60240 522 aa16.08■□□□□ 0.16
PTPRF-214ENST00000496043 NBPF7P0C2Y1 421 aaPredicted RBP16.08■□□□□ 0.16
PTPRF-214ENST00000496043 ALDH1L2Q3SY69 923 aa16.08■□□□□ 0.16
PTPRF-214ENST00000496043 ANGEL2Q5VTE6 544 aaKnown RBP16.08■□□□□ 0.16
PTPRF-214ENST00000496043 C15orf52Q6ZUT6 534 aaKnown RBP16.08■□□□□ 0.16
PTPRF-214ENST00000496043 TRMT2AQ8IZ69 625 aaKnown RBP16.08■□□□□ 0.16
PTPRF-214ENST00000496043 SUCLG2Q96I99 432 aa16.08■□□□□ 0.16
PTPRF-214ENST00000496043 MXD3Q9BW11 206 aa16.08■□□□□ 0.16
PTPRF-214ENST00000496043 GBA2Q9HCG7 927 aaPredicted RBP16.08■□□□□ 0.16
PTPRF-214ENST00000496043 CD209Q9NNX6 404 aa16.08■□□□□ 0.16
PTPRF-214ENST00000496043 ZNF609O15014 1411 aa16.08■□□□□ 0.16
PTPRF-214ENST00000496043 SNAP23O00161 211 aa16.07■□□□□ 0.16
PTPRF-214ENST00000496043 KLRK1P26718 216 aa16.07■□□□□ 0.16
PTPRF-214ENST00000496043 HUNKP57058 714 aa16.07■□□□□ 0.16
PTPRF-214ENST00000496043 GTF2IP78347 998 aa16.07■□□□□ 0.16
PTPRF-214ENST00000496043 UTYO14607 1347 aa16.07■□□□□ 0.16
PTPRF-214ENST00000496043 ASTN2O75129 1339 aaPredicted RBP16.07■□□□□ 0.16
PTPRF-214ENST00000496043 TRPM7Q96QT4 1865 aa16.07■□□□□ 0.16
PTPRF-214ENST00000496043 SCN9AQ15858 1988 aa16.07■□□□□ 0.16
PTPRF-214ENST00000496043 AOC2O75106 756 aa16.06■□□□□ 0.16
PTPRF-214ENST00000496043 KAZALD1Q96I82 304 aa16.06■□□□□ 0.16
PTPRF-214ENST00000496043 HDAC9Q9UKV0 1011 aa16.06■□□□□ 0.16
PTPRF-214ENST00000496043 CT47B1P0C2W7 299 aaPredicted RBP16.05■□□□□ 0.16
PTPRF-214ENST00000496043 LBX1P52954 281 aa16.05■□□□□ 0.16
PTPRF-214ENST00000496043 ZNF804AQ7Z570 1209 aa16.05■□□□□ 0.16
PTPRF-214ENST00000496043 PITPNM2Q9BZ72 1349 aa16.04■□□□□ 0.16
PTPRF-214ENST00000496043 NBPF9Q3BBW0 867 aa16.04■□□□□ 0.16
PTPRF-214ENST00000496043 RGMBQ6NW40 437 aa16.04■□□□□ 0.16
PTPRF-214ENST00000496043 CCDC102AQ96A19 550 aa16.04■□□□□ 0.16
PTPRF-214ENST00000496043 CDCA5Q96FF9 252 aa16.04■□□□□ 0.16
PTPRF-214ENST00000496043 BICC1Q9H694 974 aaKnown RBP16.04■□□□□ 0.16
PTPRF-214ENST00000496043 SMC4Q9NTJ3 1288 aa16.04■□□□□ 0.16
PTPRF-214ENST00000496043 PCNTO95613 3336 aa16.03■□□□□ 0.16
PTPRF-214ENST00000496043 IRS2Q9Y4H2 1338 aa16.03■□□□□ 0.16
PTPRF-214ENST00000496043 WNT10BO00744 389 aa16.03■□□□□ 0.16
PTPRF-214ENST00000496043 HSPA8P11142 646 aaKnown RBP16.03■□□□□ 0.16
PTPRF-214ENST00000496043 IL1R1P14778 569 aa16.03■□□□□ 0.16
PTPRF-214ENST00000496043 NOGQ13253 232 aa16.03■□□□□ 0.16
PTPRF-214ENST00000496043 UBE4AQ14139 1066 aa16.03■□□□□ 0.16
PTPRF-214ENST00000496043 RABL6Q3YEC7 729 aaPredicted RBP16.03■□□□□ 0.16
PTPRF-214ENST00000496043 KIAA0825Q8IV33 1275 aa16.03■□□□□ 0.16
PTPRF-214ENST00000496043 PUS3Q9BZE2 481 aaKnown RBP16.03■□□□□ 0.16
PTPRF-214ENST00000496043 USP44Q9H0E7 712 aa16.03■□□□□ 0.16
PTPRF-214ENST00000496043 ZNF157P51786 506 aaPredicted RBP16.02■□□□□ 0.16
PTPRF-214ENST00000496043 RIPOR2Q9Y4F9 1068 aa16.02■□□□□ 0.16
PTPRF-214ENST00000496043 POLR2AP24928 1970 aaKnown RBP16.02■□□□□ 0.15
PTPRF-214ENST00000496043 SPEF2Q9C093 1822 aa16.01■□□□□ 0.15
PTPRF-214ENST00000496043 MROH5Q6ZUA9 1318 aa16.01■□□□□ 0.15
PTPRF-214ENST00000496043 CA12O43570 354 aa16.01■□□□□ 0.15
PTPRF-214ENST00000496043 SASH1O94885 1247 aa16.01■□□□□ 0.15
PTPRF-214ENST00000496043 BRPF1P55201 1214 aaPredicted RBP16.01■□□□□ 0.15
PTPRF-214ENST00000496043 FKBP1AP62942 108 aaKnown RBP16.01■□□□□ 0.15
PTPRF-214ENST00000496043 FKBP1BP68106 108 aa16.01■□□□□ 0.15
PTPRF-214ENST00000496043 NOB1Q9ULX3 412 aaKnown RBP16.01■□□□□ 0.15
PTPRF-214ENST00000496043 HIBADHP31937 336 aaKnown RBP16■□□□□ 0.15
PTPRF-214ENST00000496043 DLGAP5Q15398 846 aa16■□□□□ 0.15
PTPRF-214ENST00000496043 ANKRD44Q8N8A2 993 aa16■□□□□ 0.15
PTPRF-214ENST00000496043 SCAF8Q9UPN6 1271 aaKnown RBP16■□□□□ 0.15
PTPRF-214ENST00000496043 CAPN15O75808 1086 aa15.99■□□□□ 0.15
PTPRF-214ENST00000496043 PRAMEF18Q5VWM3 479 aa15.99■□□□□ 0.15
PTPRF-214ENST00000496043 CERS5Q8N5B7 392 aa15.99■□□□□ 0.15
PTPRF-214ENST00000496043 TDRD7Q8NHU6 1098 aaKnown RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms