RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 GIGYF2Q6Y7W6 1299 aaKnown RBP13.22□□□□□ -0.29
CHMP3-209ENST00000494623 ZNF830Q96NB3 372 aaPredicted RBP13.22□□□□□ -0.29
CHMP3-209ENST00000494623 NUP62CLQ9H1M0 184 aa13.22□□□□□ -0.29
CHMP3-209ENST00000494623 NCOA5Q9HCD5 579 aaKnown RBP13.22□□□□□ -0.29
CHMP3-209ENST00000494623 DACT1Q9NYF0 836 aa13.22□□□□□ -0.29
CHMP3-209ENST00000494623 MAP3K15Q6ZN16 1313 aa13.22□□□□□ -0.29
CHMP3-209ENST00000494623 CCDC192P0DO97 292 aa13.22□□□□□ -0.29
CHMP3-209ENST00000494623 MCM5P33992 734 aa13.22□□□□□ -0.29
CHMP3-209ENST00000494623 METTL24Q5JXM2 366 aa13.22□□□□□ -0.29
CHMP3-209ENST00000494623 PI16Q6UXB8 463 aa13.22□□□□□ -0.29
CHMP3-209ENST00000494623 LDHAL6AQ6ZMR3 332 aa13.22□□□□□ -0.29
CHMP3-209ENST00000494623 CKAP2LQ8IYA6 745 aa13.22□□□□□ -0.29
CHMP3-209ENST00000494623 NSUN7Q8NE18 718 aaKnown RBP13.22□□□□□ -0.29
CHMP3-209ENST00000494623 CTDNEP1O95476 244 aa13.21□□□□□ -0.29
CHMP3-209ENST00000494623 MAP3K11Q16584 847 aa13.21□□□□□ -0.29
CHMP3-209ENST00000494623 LRRFIP1Q32MZ4 808 aaKnown RBP13.21□□□□□ -0.29
CHMP3-209ENST00000494623 SMARCC2Q8TAQ2 1214 aa13.21□□□□□ -0.29
CHMP3-209ENST00000494623 LLPHQ9BRT6 129 aaKnown RBP13.21□□□□□ -0.29
CHMP3-209ENST00000494623 PTPDC1A2A3K4 754 aa13.21□□□□□ -0.29
CHMP3-209ENST00000494623 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.21□□□□□ -0.29
CHMP3-209ENST00000494623 NLRP10Q86W26 655 aa13.21□□□□□ -0.29
CHMP3-209ENST00000494623 TICAM2Q86XR7 235 aa13.21□□□□□ -0.29
CHMP3-209ENST00000494623 BICD2Q8TD16 824 aa13.21□□□□□ -0.29
CHMP3-209ENST00000494623 PLA2G12BQ9BX93 195 aa13.21□□□□□ -0.29
CHMP3-209ENST00000494623 GREM2Q9H772 168 aa13.21□□□□□ -0.29
CHMP3-209ENST00000494623 FBXO3Q9UK99 471 aa13.21□□□□□ -0.29
CHMP3-209ENST00000494623 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.21□□□□□ -0.29
CHMP3-209ENST00000494623 ITGA6P23229 1130 aa13.2□□□□□ -0.3
CHMP3-209ENST00000494623 ATP2B3Q16720 1220 aa13.2□□□□□ -0.3
CHMP3-209ENST00000494623 TTLL11Q8NHH1 800 aa13.2□□□□□ -0.3
CHMP3-209ENST00000494623 PGBD1Q96JS3 809 aa13.2□□□□□ -0.3
CHMP3-209ENST00000494623 SLC4A9Q96Q91 983 aa13.2□□□□□ -0.3
CHMP3-209ENST00000494623 TNMDQ9H2S6 317 aa13.2□□□□□ -0.3
CHMP3-209ENST00000494623 ZSCAN16Q9H4T2 348 aaPredicted RBP13.2□□□□□ -0.3
CHMP3-209ENST00000494623 CNNM1Q9NRU3 951 aa13.2□□□□□ -0.3
CHMP3-209ENST00000494623 PDIA3P30101 505 aaKnown RBP13.2□□□□□ -0.3
CHMP3-209ENST00000494623 PUS7LQ9H0K6 701 aaKnown RBP13.2□□□□□ -0.3
CHMP3-209ENST00000494623 GPHNQ9NQX3 736 aaPredicted RBP13.2□□□□□ -0.3
CHMP3-209ENST00000494623 TBC1D2BQ9UPU7 963 aa13.2□□□□□ -0.3
CHMP3-209ENST00000494623 R3HCC1Q9Y3T6 440 aaKnown RBP13.2□□□□□ -0.3
CHMP3-209ENST00000494623 KAT6BQ8WYB5 2073 aa13.2□□□□□ -0.3
CHMP3-209ENST00000494623 PAPPAQ13219 1627 aa13.2□□□□□ -0.3
CHMP3-209ENST00000494623 FGAP02671 866 aa13.19□□□□□ -0.3
CHMP3-209ENST00000494623 GUCY1B3Q02153 619 aa13.19□□□□□ -0.3
CHMP3-209ENST00000494623 TRMT112Q9UI30 125 aaKnown RBP13.19□□□□□ -0.3
CHMP3-209ENST00000494623 CTNNA3Q9UI47 895 aa13.19□□□□□ -0.3
CHMP3-209ENST00000494623 CFAP45Q9UL16 551 aa13.19□□□□□ -0.3
CHMP3-209ENST00000494623 RIPOR2Q9Y4F9 1068 aa13.19□□□□□ -0.3
CHMP3-209ENST00000494623 SHANK3Q9BYB0 1731 aa13.19□□□□□ -0.3
CHMP3-209ENST00000494623 ANKRD18BA2A2Z9 1011 aa13.19□□□□□ -0.3
CHMP3-209ENST00000494623 IRS4O14654 1257 aaPredicted RBP13.19□□□□□ -0.3
CHMP3-209ENST00000494623 AP5Z1O43299 807 aa13.19□□□□□ -0.3
CHMP3-209ENST00000494623 NR1I2O75469 434 aa13.19□□□□□ -0.3
CHMP3-209ENST00000494623 ZFYP08048 801 aaPredicted RBP13.19□□□□□ -0.3
CHMP3-209ENST00000494623 CYP19A1P11511 503 aaPredicted RBP13.19□□□□□ -0.3
CHMP3-209ENST00000494623 IMMTQ16891 758 aaKnown RBP13.19□□□□□ -0.3
CHMP3-209ENST00000494623 AGXT2Q9BYV1 514 aa13.19□□□□□ -0.3
CHMP3-209ENST00000494623 ZBTB1Q9Y2K1 713 aa13.19□□□□□ -0.3
CHMP3-209ENST00000494623 HMGN5P82970 282 aaKnown RBP13.19□□□□□ -0.3
CHMP3-209ENST00000494623 A0A0G2JS52 829 aa13.18□□□□□ -0.3
CHMP3-209ENST00000494623 EXOC5O00471 708 aa13.18□□□□□ -0.3
CHMP3-209ENST00000494623 FOXP2O15409 715 aa13.18□□□□□ -0.3
CHMP3-209ENST00000494623 TYRO3Q06418 890 aa13.18□□□□□ -0.3
CHMP3-209ENST00000494623 APPBP2Q92624 585 aa13.18□□□□□ -0.3
CHMP3-209ENST00000494623 ZNF274Q96GC6 653 aaPredicted RBP13.18□□□□□ -0.3
CHMP3-209ENST00000494623 TOGARAM1Q9Y4F4 1720 aa13.18□□□□□ -0.3
CHMP3-209ENST00000494623 CTSWP56202 376 aa13.18□□□□□ -0.3
CHMP3-209ENST00000494623 FTOQ9C0B1 505 aaKnown RBP eCLIP13.18□□□□□ -0.3
CHMP3-209ENST00000494623 TTC12Q9H892 705 aaPredicted RBP13.18□□□□□ -0.3
CHMP3-209ENST00000494623 DDX19AQ9NUU7 478 aaKnown RBP13.18□□□□□ -0.3
CHMP3-209ENST00000494623 MRVI1Q9Y6F6 885 aa13.18□□□□□ -0.3
CHMP3-209ENST00000494623 MCAMP43121 646 aa13.17□□□□□ -0.3
CHMP3-209ENST00000494623 NAA16Q6N069 864 aaPredicted RBP13.17□□□□□ -0.3
CHMP3-209ENST00000494623 KLHL34Q8N239 644 aa13.17□□□□□ -0.3
CHMP3-209ENST00000494623 DNAJC5Q9H3Z4 198 aa13.17□□□□□ -0.3
CHMP3-209ENST00000494623 KIF3AQ9Y496 699 aa13.17□□□□□ -0.3
CHMP3-209ENST00000494623 CDHR2Q9BYE9 1310 aa13.17□□□□□ -0.3
CHMP3-209ENST00000494623 GPAA1O43292 621 aa13.17□□□□□ -0.3
CHMP3-209ENST00000494623 ADD1P35611 737 aaKnown RBP13.17□□□□□ -0.3
CHMP3-209ENST00000494623 RAB11FIP4Q86YS3 637 aa13.17□□□□□ -0.3
CHMP3-209ENST00000494623 CLSTN2Q9H4D0 955 aa13.17□□□□□ -0.3
CHMP3-209ENST00000494623 FAM177BA6PVY3 158 aa13.16□□□□□ -0.3
CHMP3-209ENST00000494623 ZNF213O14771 459 aa13.16□□□□□ -0.3
CHMP3-209ENST00000494623 PRC1O43663 620 aa13.16□□□□□ -0.3
CHMP3-209ENST00000494623 KIAA2012Q0VF49 1180 aa13.16□□□□□ -0.3
CHMP3-209ENST00000494623 LUZP1Q86V48 1076 aa13.16□□□□□ -0.3
CHMP3-209ENST00000494623 DZIP3Q86Y13 1208 aaKnown RBP13.16□□□□□ -0.3
CHMP3-209ENST00000494623 HELBQ8NG08 1087 aaPredicted RBP13.16□□□□□ -0.3
CHMP3-209ENST00000494623 FAM200AQ8TCP9 573 aa13.16□□□□□ -0.3
CHMP3-209ENST00000494623 STRCQ7RTU9 1775 aa13.16□□□□□ -0.3
CHMP3-209ENST00000494623 TPM2P07951 284 aa13.16□□□□□ -0.3
CHMP3-209ENST00000494623 ANO6Q4KMQ2 910 aa13.16□□□□□ -0.3
CHMP3-209ENST00000494623 SLC9C2Q5TAH2 1124 aa13.16□□□□□ -0.3
CHMP3-209ENST00000494623 SPC24Q8NBT2 197 aa13.16□□□□□ -0.3
CHMP3-209ENST00000494623 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.16□□□□□ -0.3
CHMP3-209ENST00000494623 LAMA4Q16363 1823 aa13.15□□□□□ -0.3
CHMP3-209ENST00000494623 IDH1O75874 414 aaKnown RBP13.15□□□□□ -0.3
CHMP3-209ENST00000494623 SASS6Q6UVJ0 657 aa13.15□□□□□ -0.3
CHMP3-209ENST00000494623 ABCA3Q99758 1704 aa13.15□□□□□ -0.3
CHMP3-209ENST00000494623 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms