RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 ECM29Q5VYK3 1845 aa18.5■□□□□ 0.55
PRPF40A-211ENST00000493468 CENPFP49454 3210 aa18.5■□□□□ 0.55
PRPF40A-211ENST00000493468 KIAA0100Q14667 2235 aaKnown RBP18.49■□□□□ 0.55
PRPF40A-211ENST00000493468 PTPN12Q05209 780 aaKnown RBP18.49■□□□□ 0.55
PRPF40A-211ENST00000493468 LDLRAD1Q5T700 205 aa18.49■□□□□ 0.55
PRPF40A-211ENST00000493468 RIC3Q7Z5B4 369 aa18.49■□□□□ 0.55
PRPF40A-211ENST00000493468 R3HDMLQ9H3Y0 253 aa18.49■□□□□ 0.55
PRPF40A-211ENST00000493468 TRIM35Q9UPQ4 493 aa18.49■□□□□ 0.55
PRPF40A-211ENST00000493468 INHBEP58166 350 aa18.48■□□□□ 0.55
PRPF40A-211ENST00000493468 MKRN3Q13064 507 aaKnown RBP18.48■□□□□ 0.55
PRPF40A-211ENST00000493468 STRIP1Q5VSL9 837 aa18.48■□□□□ 0.55
PRPF40A-211ENST00000493468 SPRYD7Q5W111 196 aa18.48■□□□□ 0.55
PRPF40A-211ENST00000493468 APOBEC3FQ8IUX4 373 aaKnown RBP18.48■□□□□ 0.55
PRPF40A-211ENST00000493468 LAS1LQ9Y4W2 734 aaKnown RBP18.48■□□□□ 0.55
PRPF40A-211ENST00000493468 DUSP27Q5VZP5 1158 aa18.47■□□□□ 0.55
PRPF40A-211ENST00000493468 CDC5LQ99459 802 aaKnown RBP18.47■□□□□ 0.55
PRPF40A-211ENST00000493468 BRCA2P51587 3418 aa18.47■□□□□ 0.55
PRPF40A-211ENST00000493468 MANSC4A6NHS7 340 aaPredicted RBP18.46■□□□□ 0.55
PRPF40A-211ENST00000493468 MYD88Q99836 296 aa18.46■□□□□ 0.55
PRPF40A-211ENST00000493468 CWC25Q9NXE8 425 aaPredicted RBP18.46■□□□□ 0.55
PRPF40A-211ENST00000493468 ZBTB48P10074 688 aaPredicted RBP18.45■□□□□ 0.54
PRPF40A-211ENST00000493468 NEUROD2Q15784 382 aa18.45■□□□□ 0.54
PRPF40A-211ENST00000493468 MAP3K11Q16584 847 aa18.45■□□□□ 0.54
PRPF40A-211ENST00000493468 OTOP1Q7RTM1 612 aa18.45■□□□□ 0.54
PRPF40A-211ENST00000493468 ZBED3Q96IU2 234 aaPredicted RBP18.45■□□□□ 0.54
PRPF40A-211ENST00000493468 COA1Q9GZY4 146 aa18.45■□□□□ 0.54
PRPF40A-211ENST00000493468 BSDC1Q9NW68 430 aaPredicted RBP18.45■□□□□ 0.54
PRPF40A-211ENST00000493468 TRIM17Q9Y577 477 aa18.45■□□□□ 0.54
PRPF40A-211ENST00000493468 POTEFA5A3E0 1075 aa18.44■□□□□ 0.54
PRPF40A-211ENST00000493468 SASH1O94885 1247 aa18.44■□□□□ 0.54
PRPF40A-211ENST00000493468 CTSWP56202 376 aa18.44■□□□□ 0.54
PRPF40A-211ENST00000493468 IFNL1Q8IU54 200 aa18.44■□□□□ 0.54
PRPF40A-211ENST00000493468 CCDC85AQ96PX6 553 aaPredicted RBP18.44■□□□□ 0.54
PRPF40A-211ENST00000493468 MXD3Q9BW11 206 aa18.44■□□□□ 0.54
PRPF40A-211ENST00000493468 MINPP1Q9UNW1 487 aa18.44■□□□□ 0.54
PRPF40A-211ENST00000493468 UNCXA6NJT0 531 aa18.43■□□□□ 0.54
PRPF40A-211ENST00000493468 CCT4P50991 539 aaKnown RBP18.43■□□□□ 0.54
PRPF40A-211ENST00000493468 RALBP1Q15311 655 aa18.43■□□□□ 0.54
PRPF40A-211ENST00000493468 RUNDC1Q96C34 613 aa18.43■□□□□ 0.54
PRPF40A-211ENST00000493468 PHAXQ9H814 394 aaKnown RBP18.43■□□□□ 0.54
PRPF40A-211ENST00000493468 ANGEL1Q9UNK9 670 aaKnown RBP18.43■□□□□ 0.54
PRPF40A-211ENST00000493468 WTIPA6NIX2 430 aaPredicted RBP18.42■□□□□ 0.54
PRPF40A-211ENST00000493468 CCDC146Q8IYE0 955 aa18.42■□□□□ 0.54
PRPF40A-211ENST00000493468 ARMC5Q96C12 935 aa18.42■□□□□ 0.54
PRPF40A-211ENST00000493468 ERO1AQ96HE7 468 aa18.42■□□□□ 0.54
PRPF40A-211ENST00000493468 METTL22Q9BUU2 404 aaPredicted RBP18.42■□□□□ 0.54
PRPF40A-211ENST00000493468 MBIPQ9NS73 344 aa18.42■□□□□ 0.54
PRPF40A-211ENST00000493468 SSC5DA1L4H1 1573 aa18.42■□□□□ 0.54
PRPF40A-211ENST00000493468 PRKG1Q13976 671 aa18.41■□□□□ 0.54
PRPF40A-211ENST00000493468 PTPN22Q9Y2R2 807 aa18.41■□□□□ 0.54
PRPF40A-211ENST00000493468 LEMD3Q9Y2U8 911 aa18.41■□□□□ 0.54
PRPF40A-211ENST00000493468 PPP2R3BQ9Y5P8 575 aa18.41■□□□□ 0.54
PRPF40A-211ENST00000493468 IGF2BP3O00425 579 aaKnown RBP eCLIP18.4■□□□□ 0.54
PRPF40A-211ENST00000493468 DDX58O95786 925 aaKnown RBP18.4■□□□□ 0.54
PRPF40A-211ENST00000493468 ZNF853P0CG23 659 aa18.4■□□□□ 0.54
PRPF40A-211ENST00000493468 FXR1P51114 621 aaKnown RBP eCLIP18.4■□□□□ 0.545e-6■■■□□ 17
PRPF40A-211ENST00000493468 TTLL5Q6EMB2 1281 aa18.4■□□□□ 0.54
PRPF40A-211ENST00000493468 TTLL11Q8NHH1 800 aa18.4■□□□□ 0.54
PRPF40A-211ENST00000493468 FBXW7Q969H0 707 aa18.4■□□□□ 0.54
PRPF40A-211ENST00000493468 SLC10A4Q96EP9 437 aa18.4■□□□□ 0.54
PRPF40A-211ENST00000493468 WNK4Q96J92 1243 aa18.4■□□□□ 0.54
PRPF40A-211ENST00000493468 TXNRD3Q86VQ6 643 aa18.39■□□□□ 0.53
PRPF40A-211ENST00000493468 KIAA0825Q8IV33 1275 aa18.39■□□□□ 0.53
PRPF40A-211ENST00000493468 MTMR14Q8NCE2 650 aa18.39■□□□□ 0.53
PRPF40A-211ENST00000493468 JARID2Q92833 1246 aaPredicted RBP18.39■□□□□ 0.53
PRPF40A-211ENST00000493468 DEFB129Q9H1M3 183 aa18.39■□□□□ 0.53
PRPF40A-211ENST00000493468 OTOFQ9HC10 1997 aa18.39■□□□□ 0.53
PRPF40A-211ENST00000493468 PPP1R12BO60237 982 aaPredicted RBP18.38■□□□□ 0.53
PRPF40A-211ENST00000493468 OTUD7BQ6GQQ9 843 aa18.38■□□□□ 0.53
PRPF40A-211ENST00000493468 CHMP4AQ9BY43 222 aa18.38■□□□□ 0.53
PRPF40A-211ENST00000493468 GREM2Q9H772 168 aa18.38■□□□□ 0.53
PRPF40A-211ENST00000493468 A0A1B0GUL6 1792 aa18.37■□□□□ 0.53
PRPF40A-211ENST00000493468 IFT57Q9NWB7 429 aa18.37■□□□□ 0.53
PRPF40A-211ENST00000493468 ZNF804BA4D1E1 1349 aa18.37■□□□□ 0.53
PRPF40A-211ENST00000493468 CRHR2Q13324 411 aa18.36■□□□□ 0.53
PRPF40A-211ENST00000493468 CD99L2Q8TCZ2 262 aa18.36■□□□□ 0.53
PRPF40A-211ENST00000493468 CLMNQ96JQ2 1002 aa18.36■□□□□ 0.53
PRPF40A-211ENST00000493468 ANKRD2Q9GZV1 360 aa18.36■□□□□ 0.53
PRPF40A-211ENST00000493468 EFCC1Q9HA90 598 aa18.36■□□□□ 0.53
PRPF40A-211ENST00000493468 FZD1Q9UP38 647 aa18.36■□□□□ 0.53
PRPF40A-211ENST00000493468 MYBBP1AQ9BQG0 1328 aaKnown RBP18.35■□□□□ 0.53
PRPF40A-211ENST00000493468 TESPA1A2RU30 521 aaPredicted RBP18.35■□□□□ 0.53
PRPF40A-211ENST00000493468 IGKV5-2P06315 115 aa18.35■□□□□ 0.53
PRPF40A-211ENST00000493468 EN2P19622 333 aaPredicted RBP18.35■□□□□ 0.53
PRPF40A-211ENST00000493468 IGHMBP2P38935 993 aaKnown RBP18.35■□□□□ 0.53
PRPF40A-211ENST00000493468 DLGAP5Q15398 846 aa18.35■□□□□ 0.53
PRPF40A-211ENST00000493468 MAP3K2Q9Y2U5 619 aa18.35■□□□□ 0.53
PRPF40A-211ENST00000493468 CEP290O15078 2479 aa18.35■□□□□ 0.53
PRPF40A-211ENST00000493468 GNAI1P63096 354 aa18.34■□□□□ 0.53
PRPF40A-211ENST00000493468 GTF2IP78347 998 aa18.34■□□□□ 0.53
PRPF40A-211ENST00000493468 SP3Q02447 781 aa18.34■□□□□ 0.53
PRPF40A-211ENST00000493468 WDR43Q15061 677 aaKnown RBP eCLIP18.34■□□□□ 0.53
PRPF40A-211ENST00000493468 SUPT20HL1Q3ZLR7 823 aa18.34■□□□□ 0.53
PRPF40A-211ENST00000493468 KLRK1P26718 216 aa18.33■□□□□ 0.52
PRPF40A-211ENST00000493468 IREB2P48200 963 aaKnown RBP18.33■□□□□ 0.52
PRPF40A-211ENST00000493468 CALD1Q05682 793 aaKnown RBP18.33■□□□□ 0.52
PRPF40A-211ENST00000493468 CCDC30Q5VVM6 783 aa18.33■□□□□ 0.52
PRPF40A-211ENST00000493468 KSR2Q6VAB6 950 aa18.33■□□□□ 0.52
PRPF40A-211ENST00000493468 ZNF333Q96JL9 665 aa18.33■□□□□ 0.52
PRPF40A-211ENST00000493468 TMEM106CQ9BVX2 250 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms