RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-215	ENST00000492606	ZBTB3	Q9H5J0	574 aa		6.13	□□□□□ -1.43
UBR4-215	ENST00000492606	RALY	Q9UKM9	306 aa	Known RBP	6.13	□□□□□ -1.43
UBR4-215	ENST00000492606	PTPN22	Q9Y2R2	807 aa		6.13	□□□□□ -1.43
UBR4-215	ENST00000492606	POM121C	A8CG34	1229 aa		6.12	□□□□□ -1.43
UBR4-215	ENST00000492606	TK2	O00142	265 aa		6.12	□□□□□ -1.43
UBR4-215	ENST00000492606	POLRMT	O00411	1230 aa	Known RBP	6.12	□□□□□ -1.43
UBR4-215	ENST00000492606	RAD21	O60216	631 aa		6.12	□□□□□ -1.43
UBR4-215	ENST00000492606	MYC	P01106	439 aa	Predicted RBP	6.12	□□□□□ -1.43
UBR4-215	ENST00000492606	SCNN1D	P51172	638 aa		6.12	□□□□□ -1.43
UBR4-215	ENST00000492606	EMP3	P54852	163 aa		6.12	□□□□□ -1.43
UBR4-215	ENST00000492606	KIF7	Q2M1P5	1343 aa		6.12	□□□□□ -1.43
UBR4-215	ENST00000492606	TMEM31	Q5JXX7	168 aa		6.12	□□□□□ -1.43
UBR4-215	ENST00000492606	UBE2Q1	Q7Z7E8	422 aa		6.12	□□□□□ -1.43
UBR4-215	ENST00000492606	C2CD5	Q86YS7	1000 aa		6.12	□□□□□ -1.43
UBR4-215	ENST00000492606	ZFR	Q96KR1	1074 aa	Known RBP	6.12	□□□□□ -1.43
UBR4-215	ENST00000492606	HS3ST6	Q96QI5	342 aa		6.12	□□□□□ -1.43
UBR4-215	ENST00000492606	TCF20	Q9UGU0	1960 aa	Known RBP	6.11	□□□□□ -1.43
UBR4-215	ENST00000492606	EIF3A	Q14152	1382 aa	Known RBP	6.11	□□□□□ -1.43
UBR4-215	ENST00000492606	CFH	P08603	1231 aa		6.11	□□□□□ -1.43
UBR4-215	ENST00000492606	ACAP1	Q15027	740 aa		6.11	□□□□□ -1.43
UBR4-215	ENST00000492606	SLC4A8	Q2Y0W8	1093 aa		6.11	□□□□□ -1.43
UBR4-215	ENST00000492606	USP50	Q70EL3	339 aa	Predicted RBP	6.11	□□□□□ -1.43
UBR4-215	ENST00000492606	EPS8L1	Q8TE68	723 aa		6.11	□□□□□ -1.43
UBR4-215	ENST00000492606	LRRN4	Q8WUT4	740 aa		6.11	□□□□□ -1.43
UBR4-215	ENST00000492606	MYLIP	Q8WY64	445 aa		6.11	□□□□□ -1.43
UBR4-215	ENST00000492606	POGK	Q9P215	609 aa		6.11	□□□□□ -1.43
UBR4-215	ENST00000492606	SLX4	Q8IY92	1834 aa		6.11	□□□□□ -1.43
UBR4-215	ENST00000492606	ACACB	O00763	2458 aa		6.1	□□□□□ -1.43
UBR4-215	ENST00000492606	ASH1L	Q9NR48	2969 aa	Known RBP	6.1	□□□□□ -1.43
UBR4-215	ENST00000492606	SMG6	Q86US8	1419 aa	Known RBP	6.1	□□□□□ -1.43
UBR4-215	ENST00000492606	NUP155	O75694	1391 aa		6.1	□□□□□ -1.43
UBR4-215	ENST00000492606	ALPK3	Q96L96	1907 aa		6.1	□□□□□ -1.43
UBR4-215	ENST00000492606	FZD9	O00144	591 aa		6.1	□□□□□ -1.43
UBR4-215	ENST00000492606	TM4SF1	P30408	202 aa		6.1	□□□□□ -1.43
UBR4-215	ENST00000492606	CAP1	Q01518	475 aa		6.1	□□□□□ -1.43
UBR4-215	ENST00000492606	MTMR2	Q13614	643 aa		6.1	□□□□□ -1.43
UBR4-215	ENST00000492606	MPRIP	Q6WCQ1	1025 aa		6.1	□□□□□ -1.43
UBR4-215	ENST00000492606	SLF2	Q8IX21	1173 aa		6.1	□□□□□ -1.43
UBR4-215	ENST00000492606	GPC2	Q8N158	579 aa		6.1	□□□□□ -1.43
UBR4-215	ENST00000492606	SRP68	Q9UHB9	627 aa	Known RBP	6.1	□□□□□ -1.43
UBR4-215	ENST00000492606	ZNF330	Q9Y3S2	320 aa	Predicted RBP	6.1	□□□□□ -1.43
UBR4-215	ENST00000492606	NCOR2	Q9Y618	2525 aa		6.1	□□□□□ -1.43
UBR4-215	ENST00000492606	ITGB4	P16144	1822 aa		6.09	□□□□□ -1.43
UBR4-215	ENST00000492606	LTN1	O94822	1766 aa		6.09	□□□□□ -1.43
UBR4-215	ENST00000492606	LAMB2	P55268	1798 aa		6.09	□□□□□ -1.43
UBR4-215	ENST00000492606	BCOR	Q6W2J9	1755 aa		6.09	□□□□□ -1.43
UBR4-215	ENST00000492606	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	6.09	□□□□□ -1.43
UBR4-215	ENST00000492606	LOC102724428	A0A0B4J2F2	783 aa		6.09	□□□□□ -1.43
UBR4-215	ENST00000492606	FAM86C2P	A6NEL3	165 aa		6.09	□□□□□ -1.43
UBR4-215	ENST00000492606	ATP6V1A	P38606	617 aa		6.09	□□□□□ -1.43
UBR4-215	ENST00000492606	SIK1	P57059	783 aa		6.09	□□□□□ -1.43
UBR4-215	ENST00000492606	MORN1	Q5T089	497 aa		6.09	□□□□□ -1.43
UBR4-215	ENST00000492606	TDH	Q8IZJ6	230 aa		6.09	□□□□□ -1.43
UBR4-215	ENST00000492606	TRPM4	Q8TD43	1214 aa		6.09	□□□□□ -1.43
UBR4-215	ENST00000492606	RTCB	Q9Y3I0	505 aa	Known RBP	6.09	□□□□□ -1.43
UBR4-215	ENST00000492606	NRXN2	Q9P2S2	1712 aa		6.08	□□□□□ -1.44
UBR4-215	ENST00000492606	USP31	Q70CQ4	1352 aa		6.08	□□□□□ -1.44
UBR4-215	ENST00000492606	CARMIL3	Q8ND23	1372 aa		6.08	□□□□□ -1.44
UBR4-215	ENST00000492606	PER1	O15534	1290 aa	Predicted RBP	6.08	□□□□□ -1.44
UBR4-215	ENST00000492606	ITGB8	P26012	769 aa		6.08	□□□□□ -1.44
UBR4-215	ENST00000492606	RFC4	P35249	363 aa		6.08	□□□□□ -1.44
UBR4-215	ENST00000492606	ABL2	P42684	1182 aa		6.08	□□□□□ -1.44
UBR4-215	ENST00000492606	TRIM26	Q12899	539 aa	Predicted RBP	6.08	□□□□□ -1.44
UBR4-215	ENST00000492606	ADGRD1	Q6QNK2	874 aa		6.08	□□□□□ -1.44
UBR4-215	ENST00000492606	RASAL3	Q86YV0	1011 aa		6.08	□□□□□ -1.44
UBR4-215	ENST00000492606	HTATIP2	Q9BUP3	242 aa		6.08	□□□□□ -1.44
UBR4-215	ENST00000492606	PGAP2	Q9UHJ9	254 aa		6.08	□□□□□ -1.44
UBR4-215	ENST00000492606	SLC27A5	Q9Y2P5	690 aa		6.08	□□□□□ -1.44
UBR4-215	ENST00000492606	GJA3	Q9Y6H8	435 aa		6.08	□□□□□ -1.44
UBR4-215	ENST00000492606		H0YIN7	160 aa		6.07	□□□□□ -1.44
UBR4-215	ENST00000492606	ACTN4	O43707	911 aa	Known RBP	6.07	□□□□□ -1.44
UBR4-215	ENST00000492606	LMOD1	P29536	600 aa	Predicted RBP	6.07	□□□□□ -1.44
UBR4-215	ENST00000492606	LSM11	P83369	360 aa	Known RBP eCLIP	6.07	□□□□□ -1.44	6e-8	■□□□□ 10.3
UBR4-215	ENST00000492606	PUS10	Q3MIT2	529 aa	Known RBP	6.07	□□□□□ -1.44
UBR4-215	ENST00000492606	USP48	Q86UV5	1035 aa		6.07	□□□□□ -1.44
UBR4-215	ENST00000492606	SMARCC1	Q92922	1105 aa	Predicted RBP	6.07	□□□□□ -1.44
UBR4-215	ENST00000492606	ASB2	Q96Q27	587 aa		6.07	□□□□□ -1.44
UBR4-215	ENST00000492606	GBA2	Q9HCG7	927 aa	Predicted RBP	6.07	□□□□□ -1.44
UBR4-215	ENST00000492606	ZNF277	Q9NRM2	450 aa	Predicted RBP	6.07	□□□□□ -1.44
UBR4-215	ENST00000492606	SERPINA10	Q9UK55	444 aa		6.07	□□□□□ -1.44
UBR4-215	ENST00000492606	MAP1B	P46821	2468 aa	Known RBP	6.07	□□□□□ -1.44
UBR4-215	ENST00000492606	MYH14	Q7Z406	1995 aa	Known RBP	6.07	□□□□□ -1.44
UBR4-215	ENST00000492606	COL11A2	P13942	1736 aa	Predicted RBP	6.07	□□□□□ -1.44
UBR4-215	ENST00000492606	GCN1	Q92616	2671 aa	Known RBP	6.07	□□□□□ -1.44
UBR4-215	ENST00000492606	PIK3C2G	O75747	1445 aa		6.07	□□□□□ -1.44
UBR4-215	ENST00000492606	ANKRD31	Q8N7Z5	1873 aa		6.07	□□□□□ -1.44
UBR4-215	ENST00000492606	PTPRZ1	P23471	2315 aa	Predicted RBP	6.07	□□□□□ -1.44
UBR4-215	ENST00000492606	USP24	Q9UPU5	2620 aa		6.06	□□□□□ -1.44
UBR4-215	ENST00000492606	NFAT5	O94916	1531 aa		6.06	□□□□□ -1.44
UBR4-215	ENST00000492606	USP9X	Q93008	2570 aa	Predicted RBP	6.06	□□□□□ -1.44
UBR4-215	ENST00000492606	SMIM22	K7EJ46	135 aa		6.06	□□□□□ -1.44
UBR4-215	ENST00000492606	ERMP1	Q7Z2K6	904 aa		6.06	□□□□□ -1.44
UBR4-215	ENST00000492606	ZCRB1	Q8TBF4	217 aa	Known RBP	6.06	□□□□□ -1.44
UBR4-215	ENST00000492606	ZNF622	Q969S3	477 aa	Known RBP eCLIP	6.06	□□□□□ -1.44
UBR4-215	ENST00000492606	FAM163A	Q96GL9	167 aa	Predicted RBP	6.06	□□□□□ -1.44
UBR4-215	ENST00000492606	FBXL18	Q96ME1	805 aa		6.06	□□□□□ -1.44
UBR4-215	ENST00000492606	CNTNAP3B	Q96NU0	1288 aa		6.06	□□□□□ -1.44
UBR4-215	ENST00000492606	CNTNAP3	Q9BZ76	1288 aa		6.06	□□□□□ -1.44
UBR4-215	ENST00000492606	NBPF3	Q9H094	633 aa		6.06	□□□□□ -1.44
UBR4-215	ENST00000492606	SEMA6B	Q9H3T3	888 aa		6.06	□□□□□ -1.44

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms