RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 FOXD4L4Q8WXT5 416 aaPredicted RBP9.4□□□□□ -0.9
SCN1A-206ENST00000491429 HMX2A2RU54 273 aa9.39□□□□□ -0.91
SCN1A-206ENST00000491429 PAX4O43316 350 aa9.39□□□□□ -0.91
SCN1A-206ENST00000491429 ADAMTS4O75173 837 aa9.39□□□□□ -0.91
SCN1A-206ENST00000491429 IRAK1P51617 712 aa9.39□□□□□ -0.91
SCN1A-206ENST00000491429 GP2P55259 537 aaKnown RBP9.39□□□□□ -0.91
SCN1A-206ENST00000491429 DUOXA2Q1HG44 320 aa9.39□□□□□ -0.91
SCN1A-206ENST00000491429 PBX4Q9BYU1 374 aa9.39□□□□□ -0.91
SCN1A-206ENST00000491429 ABI2Q9NYB9 513 aaPredicted RBP9.39□□□□□ -0.91
SCN1A-206ENST00000491429 FNDC3AQ9Y2H6 1198 aaKnown RBP9.39□□□□□ -0.91
SCN1A-206ENST00000491429 BTBD11A6QL63 1104 aa9.38□□□□□ -0.91
SCN1A-206ENST00000491429 UVSSAQ2YD98 709 aa9.38□□□□□ -0.91
SCN1A-206ENST00000491429 CEP120Q8N960 986 aa9.38□□□□□ -0.91
SCN1A-206ENST00000491429 KLHL23Q8NBE8 558 aa9.38□□□□□ -0.91
SCN1A-206ENST00000491429 MYRFLQ96LU7 910 aa9.38□□□□□ -0.91
SCN1A-206ENST00000491429 FAM117BQ6P1L5 589 aa9.37□□□□□ -0.91
SCN1A-206ENST00000491429 KLHDC7BQ96G42 594 aa9.37□□□□□ -0.91
SCN1A-206ENST00000491429 POP1Q99575 1024 aaKnown RBP9.37□□□□□ -0.91
SCN1A-206ENST00000491429 STIM2Q9P246 746 aa9.37□□□□□ -0.91
SCN1A-206ENST00000491429 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.37□□□□□ -0.91
SCN1A-206ENST00000491429 SPINK2P20155 84 aa9.36□□□□□ -0.91
SCN1A-206ENST00000491429 RNF43Q68DV7 783 aa9.36□□□□□ -0.91
SCN1A-206ENST00000491429 NCAPG2Q86XI2 1143 aa9.36□□□□□ -0.91
SCN1A-206ENST00000491429 TMEM63CQ9P1W3 806 aa9.36□□□□□ -0.91
SCN1A-206ENST00000491429 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.35□□□□□ -0.91
SCN1A-206ENST00000491429 PRR19A6NJB7 356 aa9.35□□□□□ -0.91
SCN1A-206ENST00000491429 TAL1P17542 331 aaPredicted RBP9.35□□□□□ -0.91
SCN1A-206ENST00000491429 PTPRAP18433 802 aa9.35□□□□□ -0.91
SCN1A-206ENST00000491429 TMEM164Q5U3C3 297 aa9.35□□□□□ -0.91
SCN1A-206ENST00000491429 DBNDD2Q9BQY9 259 aa9.35□□□□□ -0.91
SCN1A-206ENST00000491429 SEC31BQ9NQW1 1179 aa9.35□□□□□ -0.91
SCN1A-206ENST00000491429 KANSL3Q9P2N6 904 aa9.35□□□□□ -0.91
SCN1A-206ENST00000491429 SRPK2P78362 688 aaKnown RBP9.34□□□□□ -0.91
SCN1A-206ENST00000491429 FAM20CQ8IXL6 584 aa9.34□□□□□ -0.91
SCN1A-206ENST00000491429 FMNL2Q96PY5 1086 aa9.34□□□□□ -0.91
SCN1A-206ENST00000491429 ADAM19Q9H013 955 aa9.34□□□□□ -0.91
SCN1A-206ENST00000491429 ELP3Q9H9T3 547 aa9.34□□□□□ -0.91
SCN1A-206ENST00000491429 ACPPP15309 386 aa9.33□□□□□ -0.92
SCN1A-206ENST00000491429 GRIK1P39086 918 aa9.33□□□□□ -0.92
SCN1A-206ENST00000491429 ATCAYQ86WG3 371 aa9.33□□□□□ -0.92
SCN1A-206ENST00000491429 NUDT16Q96DE0 195 aaKnown RBP9.33□□□□□ -0.92
SCN1A-206ENST00000491429 CNTN3Q9P232 1028 aa9.33□□□□□ -0.92
SCN1A-206ENST00000491429 H3BRJ5 948 aa9.32□□□□□ -0.92
SCN1A-206ENST00000491429 BMP3P12645 472 aa9.32□□□□□ -0.92
SCN1A-206ENST00000491429 PREPP48147 710 aa9.32□□□□□ -0.92
SCN1A-206ENST00000491429 INTS5Q6P9B9 1019 aaKnown RBP9.32□□□□□ -0.92
SCN1A-206ENST00000491429 CLEC10AQ8IUN9 316 aa9.32□□□□□ -0.92
SCN1A-206ENST00000491429 ABTB2Q8N961 1025 aa9.32□□□□□ -0.92
SCN1A-206ENST00000491429 FAM83CQ9BQN1 747 aa9.32□□□□□ -0.92
SCN1A-206ENST00000491429 ZMYND15Q9H091 742 aa9.32□□□□□ -0.92
SCN1A-206ENST00000491429 KCNF1Q9H3M0 494 aa9.32□□□□□ -0.92
SCN1A-206ENST00000491429 SLAIN2Q9P270 581 aa9.32□□□□□ -0.92
SCN1A-206ENST00000491429 TXKP42681 527 aa9.31□□□□□ -0.92
SCN1A-206ENST00000491429 NLRP12P59046 1061 aa9.31□□□□□ -0.92
SCN1A-206ENST00000491429 PDE12Q6L8Q7 609 aaKnown RBP9.31□□□□□ -0.92
SCN1A-206ENST00000491429 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.31□□□□□ -0.92
SCN1A-206ENST00000491429 BEND4Q6ZU67 534 aa9.31□□□□□ -0.92
SCN1A-206ENST00000491429 ZNF438Q7Z4V0 828 aa9.31□□□□□ -0.92
SCN1A-206ENST00000491429 DTX1Q86Y01 620 aa9.31□□□□□ -0.92
SCN1A-206ENST00000491429 SHKBP1Q8TBC3 707 aa9.31□□□□□ -0.92
SCN1A-206ENST00000491429 FAM177BA6PVY3 158 aa9.3□□□□□ -0.92
SCN1A-206ENST00000491429 SART1O43290 800 aaKnown RBP9.3□□□□□ -0.92
SCN1A-206ENST00000491429 TRPA1O75762 1119 aa9.3□□□□□ -0.92
SCN1A-206ENST00000491429 ATG7O95352 703 aa9.3□□□□□ -0.92
SCN1A-206ENST00000491429 PIP4K2BP78356 416 aa9.3□□□□□ -0.92
SCN1A-206ENST00000491429 CLP1Q92989 425 aaKnown RBP9.3□□□□□ -0.92
SCN1A-206ENST00000491429 HHIPQ96QV1 700 aa9.3□□□□□ -0.92
SCN1A-206ENST00000491429 SEPT3Q9UH03 358 aa9.3□□□□□ -0.92
SCN1A-206ENST00000491429 SALL4Q9UJQ4 1053 aa9.3□□□□□ -0.92
SCN1A-206ENST00000491429 KRTAP4-8A0A0G2JLE6 195 aa9.29□□□□□ -0.92
SCN1A-206ENST00000491429 NFKBIEO00221 500 aa9.29□□□□□ -0.92
SCN1A-206ENST00000491429 ANKRD34AQ69YU3 496 aa9.29□□□□□ -0.92
SCN1A-206ENST00000491429 C1orf127Q8N9H9 656 aa9.29□□□□□ -0.92
SCN1A-206ENST00000491429 CABP4P57796 275 aa9.28□□□□□ -0.92
SCN1A-206ENST00000491429 HGSNATQ68CP4 663 aa9.28□□□□□ -0.92
SCN1A-206ENST00000491429 SLC7A3Q8WY07 619 aa9.28□□□□□ -0.92
SCN1A-206ENST00000491429 WNT8BQ93098 351 aa9.28□□□□□ -0.92
SCN1A-206ENST00000491429 RNF208Q9H0X6 261 aa9.28□□□□□ -0.92
SCN1A-206ENST00000491429 RUSC1Q9BVN2 902 aa9.27□□□□□ -0.93
SCN1A-206ENST00000491429 OSGEPQ9NPF4 335 aa9.27□□□□□ -0.93
SCN1A-206ENST00000491429 DZANK1Q9NVP4 752 aa9.27□□□□□ -0.93
SCN1A-206ENST00000491429 A6NHS1 94 aa9.26□□□□□ -0.93
SCN1A-206ENST00000491429 WDR64B1ANS9 1081 aa9.26□□□□□ -0.93
SCN1A-206ENST00000491429 CES1P23141 567 aa9.26□□□□□ -0.93
SCN1A-206ENST00000491429 HOXA10P31260 410 aaPredicted RBP9.26□□□□□ -0.93
SCN1A-206ENST00000491429 FDX2Q6P4F2 183 aa9.26□□□□□ -0.93
SCN1A-206ENST00000491429 RNF114Q9Y508 228 aa9.26□□□□□ -0.93
SCN1A-206ENST00000491429 PDE2AO00408 941 aaPredicted RBP9.25□□□□□ -0.93
SCN1A-206ENST00000491429 WNT11O96014 354 aa9.25□□□□□ -0.93
SCN1A-206ENST00000491429 EDEM1Q92611 657 aa9.25□□□□□ -0.93
SCN1A-206ENST00000491429 MFSD14AQ96MC6 490 aa9.25□□□□□ -0.93
SCN1A-206ENST00000491429 GGNBP2Q9H3C7 697 aa9.25□□□□□ -0.93
SCN1A-206ENST00000491429 SOX13Q9UN79 622 aa9.25□□□□□ -0.93
SCN1A-206ENST00000491429 ATP2B4P23634 1241 aa9.24□□□□□ -0.93
SCN1A-206ENST00000491429 DNM1Q05193 864 aaKnown RBP9.24□□□□□ -0.93
SCN1A-206ENST00000491429 HIF3AQ9Y2N7 669 aa9.24□□□□□ -0.93
SCN1A-206ENST00000491429 MAP4P27816 1152 aaKnown RBP9.23□□□□□ -0.93
SCN1A-206ENST00000491429 SGO2Q562F6 1265 aa9.23□□□□□ -0.93
SCN1A-206ENST00000491429 XKR5Q6UX68 686 aa9.23□□□□□ -0.93
SCN1A-206ENST00000491429 CHRDQ9H2X0 955 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms