RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 TTC9Q92623 222 aa8.41□□□□□ -1.06
HMGB1P38-201ENST00000490557 LIN7BQ9HAP6 207 aa8.41□□□□□ -1.06
HMGB1P38-201ENST00000490557 DZANK1Q9NVP4 752 aa8.41□□□□□ -1.06
HMGB1P38-201ENST00000490557 ADAMTS8Q9UP79 889 aa8.41□□□□□ -1.06
HMGB1P38-201ENST00000490557 SPG7Q9UQ90 795 aa8.41□□□□□ -1.06
HMGB1P38-201ENST00000490557 A0A1W2PP55 124 aa8.4□□□□□ -1.06
HMGB1P38-201ENST00000490557 PRPF40AO75400 957 aaKnown RBP8.4□□□□□ -1.06
HMGB1P38-201ENST00000490557 TRPA1O75762 1119 aa8.4□□□□□ -1.06
HMGB1P38-201ENST00000490557 PTPRAP18433 802 aa8.4□□□□□ -1.06
HMGB1P38-201ENST00000490557 LORP23490 312 aaPredicted RBP8.4□□□□□ -1.06
HMGB1P38-201ENST00000490557 AFF1P51825 1210 aaKnown RBP8.4□□□□□ -1.06
HMGB1P38-201ENST00000490557 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.4□□□□□ -1.06
HMGB1P38-201ENST00000490557 WFDC8Q8IUA0 241 aa8.4□□□□□ -1.06
HMGB1P38-201ENST00000490557 CACTIN-AS1Q8N1I8 211 aa8.4□□□□□ -1.06
HMGB1P38-201ENST00000490557 SCARF2Q96GP6 870 aaPredicted RBP8.4□□□□□ -1.06
HMGB1P38-201ENST00000490557 LACRTQ9GZZ8 138 aa8.4□□□□□ -1.06
HMGB1P38-201ENST00000490557 PRDM6Q9NQX0 595 aa8.4□□□□□ -1.06
HMGB1P38-201ENST00000490557 WWC3Q9ULE0 1092 aa8.4□□□□□ -1.06
HMGB1P38-201ENST00000490557 TRIM33Q9UPN9 1127 aa8.4□□□□□ -1.06
HMGB1P38-201ENST00000490557 TRAK1Q9UPV9 953 aa8.4□□□□□ -1.06
HMGB1P38-201ENST00000490557 SPDYE3A6NKU9 549 aa8.39□□□□□ -1.07
HMGB1P38-201ENST00000490557 GNB5O14775 395 aa8.39□□□□□ -1.07
HMGB1P38-201ENST00000490557 SNRPNP63162 240 aaKnown RBP8.39□□□□□ -1.07
HMGB1P38-201ENST00000490557 XPCQ01831 940 aaPredicted RBP8.39□□□□□ -1.07
HMGB1P38-201ENST00000490557 PEAR1Q5VY43 1037 aaPredicted RBP8.39□□□□□ -1.07
HMGB1P38-201ENST00000490557 TMEM102Q8N9M5 508 aaPredicted RBP8.39□□□□□ -1.07
HMGB1P38-201ENST00000490557 ITGAEP38570 1179 aa8.38□□□□□ -1.07
HMGB1P38-201ENST00000490557 CABP4P57796 275 aa8.38□□□□□ -1.07
HMGB1P38-201ENST00000490557 TRAPPC3LQ5T215 181 aa8.38□□□□□ -1.07
HMGB1P38-201ENST00000490557 KIAA0319Q5VV43 1072 aa8.38□□□□□ -1.07
HMGB1P38-201ENST00000490557 IL22RA1Q8N6P7 574 aa8.38□□□□□ -1.07
HMGB1P38-201ENST00000490557 GIPC2Q8TF65 315 aa8.38□□□□□ -1.07
HMGB1P38-201ENST00000490557 SETDB2Q96T68 719 aa8.38□□□□□ -1.07
HMGB1P38-201ENST00000490557 POP1Q99575 1024 aaKnown RBP8.38□□□□□ -1.07
HMGB1P38-201ENST00000490557 SUV39H2Q9H5I1 410 aa8.38□□□□□ -1.07
HMGB1P38-201ENST00000490557 STK17AQ9UEE5 414 aa8.38□□□□□ -1.07
HMGB1P38-201ENST00000490557 CDC27P30260 824 aa8.37□□□□□ -1.07
HMGB1P38-201ENST00000490557 MSL1Q68DK7 614 aa8.37□□□□□ -1.07
HMGB1P38-201ENST00000490557 FAM117BQ6P1L5 589 aa8.37□□□□□ -1.07
HMGB1P38-201ENST00000490557 PI16Q6UXB8 463 aa8.37□□□□□ -1.07
HMGB1P38-201ENST00000490557 NXPE3Q969Y0 559 aa8.37□□□□□ -1.07
HMGB1P38-201ENST00000490557 FRMD6Q96NE9 622 aa8.37□□□□□ -1.07
HMGB1P38-201ENST00000490557 HHIPQ96QV1 700 aa8.37□□□□□ -1.07
HMGB1P38-201ENST00000490557 DUSP9Q99956 384 aaKnown RBP8.37□□□□□ -1.07
HMGB1P38-201ENST00000490557 MUC3BQ9H195 1237 aa8.37□□□□□ -1.07
HMGB1P38-201ENST00000490557 MRS2Q9HD23 443 aa8.37□□□□□ -1.07
HMGB1P38-201ENST00000490557 NOP53Q9NZM5 478 aaKnown RBP8.37□□□□□ -1.07
HMGB1P38-201ENST00000490557 GIPC1O14908 333 aa8.36□□□□□ -1.07
HMGB1P38-201ENST00000490557 GRM2Q14416 872 aa8.36□□□□□ -1.07
HMGB1P38-201ENST00000490557 FBXO33Q7Z6M2 555 aa8.36□□□□□ -1.07
HMGB1P38-201ENST00000490557 BSNDQ8WZ55 320 aa8.36□□□□□ -1.07
HMGB1P38-201ENST00000490557 BCO2Q9BYV7 579 aa8.36□□□□□ -1.07
HMGB1P38-201ENST00000490557 BHLHE41Q9C0J9 482 aaPredicted RBP8.36□□□□□ -1.07
HMGB1P38-201ENST00000490557 PPME1Q9Y570 386 aa8.36□□□□□ -1.07
HMGB1P38-201ENST00000490557 CNTNAP5Q8WYK1 1306 aa8.35□□□□□ -1.07
HMGB1P38-201ENST00000490557 RNF225M0QZC1 329 aaPredicted RBP8.35□□□□□ -1.07
HMGB1P38-201ENST00000490557 NFKBIEO00221 500 aa8.35□□□□□ -1.07
HMGB1P38-201ENST00000490557 CDC25BP30305 580 aa8.35□□□□□ -1.07
HMGB1P38-201ENST00000490557 RAC1P63000 192 aa8.35□□□□□ -1.07
HMGB1P38-201ENST00000490557 PSMD2Q13200 908 aa8.35□□□□□ -1.07
HMGB1P38-201ENST00000490557 CCNJLQ8IV13 435 aa8.35□□□□□ -1.07
HMGB1P38-201ENST00000490557 DMRTC2Q8IXT2 367 aaPredicted RBP8.35□□□□□ -1.07
HMGB1P38-201ENST00000490557 PLVAPQ9BX97 442 aa8.35□□□□□ -1.07
HMGB1P38-201ENST00000490557 NID1P14543 1247 aa8.34□□□□□ -1.07
HMGB1P38-201ENST00000490557 HOXB4P17483 251 aaPredicted RBP8.34□□□□□ -1.07
HMGB1P38-201ENST00000490557 GNA15P30679 374 aa8.34□□□□□ -1.07
HMGB1P38-201ENST00000490557 GRIK5Q16478 980 aa8.34□□□□□ -1.07
HMGB1P38-201ENST00000490557 PRRT3Q5FWE3 981 aa8.34□□□□□ -1.07
HMGB1P38-201ENST00000490557 NXPE4Q6UWF7 544 aa8.34□□□□□ -1.07
HMGB1P38-201ENST00000490557 LINC00114Q6XXX2 140 aa8.34□□□□□ -1.07
HMGB1P38-201ENST00000490557 RGS22Q8NE09 1264 aa8.34□□□□□ -1.07
HMGB1P38-201ENST00000490557 SRCIN1Q9C0H9 1055 aa8.34□□□□□ -1.07
HMGB1P38-201ENST00000490557 SH2B1Q9NRF2 756 aaPredicted RBP8.34□□□□□ -1.07
HMGB1P38-201ENST00000490557 PARP2Q9UGN5 583 aa8.34□□□□□ -1.07
HMGB1P38-201ENST00000490557 A0A096LPE4 126 aa8.33□□□□□ -1.08
HMGB1P38-201ENST00000490557 A0A1W2PPZ6 126 aa8.33□□□□□ -1.08
HMGB1P38-201ENST00000490557 METTL12A8MUP2 240 aa8.33□□□□□ -1.08
HMGB1P38-201ENST00000490557 EIF4BP23588 611 aaKnown RBP8.33□□□□□ -1.08
HMGB1P38-201ENST00000490557 FCGRTP55899 365 aa8.33□□□□□ -1.08
HMGB1P38-201ENST00000490557 TRIM28Q13263 835 aaKnown RBP8.33□□□□□ -1.08
HMGB1P38-201ENST00000490557 DTHD1Q6ZMT9 781 aa8.33□□□□□ -1.08
HMGB1P38-201ENST00000490557 FOXD4L4Q8WXT5 416 aaPredicted RBP8.33□□□□□ -1.08
HMGB1P38-201ENST00000490557 TCF12Q99081 682 aa8.33□□□□□ -1.08
HMGB1P38-201ENST00000490557 ADAM19Q9H013 955 aa8.33□□□□□ -1.08
HMGB1P38-201ENST00000490557 ZFYVE1Q9HBF4 777 aa8.33□□□□□ -1.08
HMGB1P38-201ENST00000490557 TMEM238LA0A1B0GVL6 79 aa8.32□□□□□ -1.08
HMGB1P38-201ENST00000490557 PRPF40BQ6NWY9 871 aaKnown RBP8.32□□□□□ -1.08
HMGB1P38-201ENST00000490557 DCAF11Q8TEB1 546 aa8.32□□□□□ -1.08
HMGB1P38-201ENST00000490557 TRIM11Q96F44 468 aa8.32□□□□□ -1.08
HMGB1P38-201ENST00000490557 H3BRJ5 948 aa8.31□□□□□ -1.08
HMGB1P38-201ENST00000490557 LINC01387J3KSC0 135 aa8.31□□□□□ -1.08
HMGB1P38-201ENST00000490557 XRCC5P13010 732 aaKnown RBP8.31□□□□□ -1.08
HMGB1P38-201ENST00000490557 EPHA1P21709 976 aa8.31□□□□□ -1.08
HMGB1P38-201ENST00000490557 GSTT1P30711 240 aa8.31□□□□□ -1.08
HMGB1P38-201ENST00000490557 GRIA4P48058 902 aa8.31□□□□□ -1.08
HMGB1P38-201ENST00000490557 ARL4DP49703 201 aa8.31□□□□□ -1.08
HMGB1P38-201ENST00000490557 TAGLNQ01995 201 aaKnown RBP8.31□□□□□ -1.08
HMGB1P38-201ENST00000490557 IKBKEQ14164 716 aa8.31□□□□□ -1.08
HMGB1P38-201ENST00000490557 SPRED3Q2MJR0 410 aa8.31□□□□□ -1.08
HMGB1P38-201ENST00000490557 TXNDC11Q6PKC3 985 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms