RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 DHX29Q7Z478 1369 aaKnown RBP8.2□□□□□ -1.1
SYNE1-228ENST00000490135 ENO4A6NNW6 628 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 ZNF75DP51815 510 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 AMPD3Q01432 767 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 ABTB2Q8N961 1025 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 DDX54Q8TDD1 881 aaKnown RBP8.2□□□□□ -1.1
SYNE1-228ENST00000490135 PDLIM2Q96JY6 352 aa8.2□□□□□ -1.1
SYNE1-228ENST00000490135 JAKMIP1Q96N16 626 aaKnown RBP8.2□□□□□ -1.1
SYNE1-228ENST00000490135 DDX19AQ9NUU7 478 aaKnown RBP8.2□□□□□ -1.1
SYNE1-228ENST00000490135 NKTRP30414 1462 aaKnown RBP8.2□□□□□ -1.1
SYNE1-228ENST00000490135 CCT4P50991 539 aaKnown RBP8.19□□□□□ -1.1
SYNE1-228ENST00000490135 SLFN5Q08AF3 891 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 CAVIN4Q5BKX8 364 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 CCT6BQ92526 530 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 SRCIN1Q9C0H9 1055 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 FAM114A2Q9NRY5 505 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 LACTBP83111 547 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-228ENST00000490135 BRD3Q15059 726 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 SUGP1Q8IWZ8 645 aaKnown RBP8.19□□□□□ -1.1
SYNE1-228ENST00000490135 SLF2Q8IX21 1173 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 ZNF444Q8N0Y2 327 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-228ENST00000490135 CALML4Q96GE6 196 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 CACYBPQ9HB71 228 aaKnown RBP8.19□□□□□ -1.1
SYNE1-228ENST00000490135 SPINK5Q9NQ38 1064 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-228ENST00000490135 ABCF2Q9UG63 623 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 RASAL2Q9UJF2 1139 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 AP1G2O75843 785 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 SH3BGRP55822 239 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-228ENST00000490135 LAMB3Q13751 1172 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 CRYMQ14894 314 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 TRIM68Q6AZZ1 485 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 USP37Q86T82 979 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 PACS2Q86VP3 889 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 TBC1D5Q92609 795 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 TTC14Q96N46 770 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 STMN4Q9H169 189 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-228ENST00000490135 CWC25Q9NXE8 425 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-228ENST00000490135 FAM184BQ9ULE4 1060 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 CCDC194A0A1B0GVG4 234 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 ATP2A1O14983 1001 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 ESCO1Q5FWF5 840 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 HDGFL1Q5TGJ6 251 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 ABTB1Q969K4 478 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-228ENST00000490135 GBP5Q96PP8 586 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 SAMM50Q9Y512 469 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 PRDM2Q13029 1718 aa8.19□□□□□ -1.1
SYNE1-228ENST00000490135 A0A087WZG4 1122 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 DYTNA2CJ06 578 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 A6NNZ2 444 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 PPFIA4O75335 1185 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 TYRO3Q06418 890 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 TUBB8Q3ZCM7 444 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 CAPRIN2Q6IMN6 1127 aaKnown RBP8.18□□□□□ -1.1
SYNE1-228ENST00000490135 CCDC82Q8N4S0 544 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 GBP7Q8N8V2 638 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-228ENST00000490135 FAM204AQ9H8W3 233 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 EFCAB8A8MWE9 144 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 ATF7IPQ6VMQ6 1270 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 RSPH3Q86UC2 560 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 CTIFO43310 598 aaKnown RBP8.18□□□□□ -1.1
SYNE1-228ENST00000490135 GNGT1P63211 74 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 HHATQ5VTY9 493 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 ZNF652Q9Y2D9 606 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 CRCPO75575 148 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 POLE2P56282 527 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 ST5P78524 1137 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 TBC1D9Q6ZT07 1266 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 ATG3Q9NT62 314 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 TXNDC16Q9P2K2 825 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 FAN1Q9Y2M0 1017 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 LUC7L2Q9Y383 392 aaKnown RBP8.18□□□□□ -1.1
SYNE1-228ENST00000490135 MAPKBP1O60336 1514 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 MYL6BP14649 208 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 PRPHP41219 470 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 PIP4K2BP78356 416 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 CFAP157Q5JU67 520 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 USH1CQ9Y6N9 552 aa8.18□□□□□ -1.1
SYNE1-228ENST00000490135 KIF21BO75037 1637 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 SCAPERQ9BY12 1400 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 MINDY4BA8MYZ0 360 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 TSNAXIP1Q2TAA8 658 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 SIRT1Q96EB6 747 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 LRRC27Q9C0I9 530 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 ALDH3A1P30838 453 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 CAPS2Q9BXY5 557 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 ADAM21Q9UKJ8 722 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 NCOA1Q15788 1441 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 HNRNPH1P31943 449 aaKnown RBP8.17□□□□□ -1.1
SYNE1-228ENST00000490135 RFC1P35251 1148 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-228ENST00000490135 CORO7P57737 925 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 ZBTB17Q13105 803 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 CWC27Q6UX04 472 aaKnown RBP8.17□□□□□ -1.1
SYNE1-228ENST00000490135 EHBP1Q8NDI1 1231 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 CPLX3Q8WVH0 158 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 HAUS7Q99871 368 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 BAG1Q99933 345 aaPredicted RBP8.17□□□□□ -1.1
SYNE1-228ENST00000490135 PPP1R12CQ9BZL4 782 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 UBAP1Q9NZ09 502 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 ANKIB1Q9P2G1 1089 aa8.17□□□□□ -1.1
SYNE1-228ENST00000490135 ORC3Q9UBD5 711 aaPredicted RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms