RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 RUFY2Q8WXA3 655 aa26.22■■□□□ 1.79
SMC4-221ENST00000489573 MASTLQ96GX5 879 aa26.22■■□□□ 1.79
SMC4-221ENST00000489573 XDHP47989 1333 aa26.21■■□□□ 1.79
SMC4-221ENST00000489573 TICAM2Q86XR7 235 aa26.21■■□□□ 1.79
SMC4-221ENST00000489573 SNRKQ9NRH2 765 aa26.21■■□□□ 1.79
SMC4-221ENST00000489573 PSDA5PKW4 1024 aaPredicted RBP26.2■■□□□ 1.79
SMC4-221ENST00000489573 PPEF1O14829 653 aaPredicted RBP26.2■■□□□ 1.79
SMC4-221ENST00000489573 ZAP70P43403 619 aa26.2■■□□□ 1.79
SMC4-221ENST00000489573 CWC27Q6UX04 472 aaKnown RBP26.2■■□□□ 1.79
SMC4-221ENST00000489573 ANKIB1Q9P2G1 1089 aa26.2■■□□□ 1.79
SMC4-221ENST00000489573 ZNF804BA4D1E1 1349 aa26.2■■□□□ 1.78
SMC4-221ENST00000489573 SGSM2O43147 1006 aa26.2■■□□□ 1.78
SMC4-221ENST00000489573 ALDH1B1P30837 517 aa26.2■■□□□ 1.78
SMC4-221ENST00000489573 BCAMP50895 628 aa26.2■■□□□ 1.78
SMC4-221ENST00000489573 C2CD5Q86YS7 1000 aa26.2■■□□□ 1.78
SMC4-221ENST00000489573 LEMD3Q9Y2U8 911 aa26.2■■□□□ 1.78
SMC4-221ENST00000489573 LRRC37AA6NMS7 1700 aa26.19■■□□□ 1.78
SMC4-221ENST00000489573 WTIPA6NIX2 430 aaPredicted RBP26.19■■□□□ 1.78
SMC4-221ENST00000489573 CAVIN4Q5BKX8 364 aa26.19■■□□□ 1.78
SMC4-221ENST00000489573 PI16Q6UXB8 463 aa26.19■■□□□ 1.78
SMC4-221ENST00000489573 C10orf71Q711Q0 1435 aa26.18■■□□□ 1.78
SMC4-221ENST00000489573 RAD50Q92878 1312 aa26.18■■□□□ 1.78
SMC4-221ENST00000489573 H0YIN7 160 aa26.18■■□□□ 1.78
SMC4-221ENST00000489573 RBM25P49756 843 aaKnown RBP26.18■■□□□ 1.78
SMC4-221ENST00000489573 NMIQ13287 307 aaPredicted RBP26.18■■□□□ 1.78
SMC4-221ENST00000489573 SLC51AQ86UW1 340 aa26.18■■□□□ 1.78
SMC4-221ENST00000489573 USP26Q9BXU7 913 aa26.18■■□□□ 1.78
SMC4-221ENST00000489573 IL25Q9H293 177 aa26.18■■□□□ 1.78
SMC4-221ENST00000489573 ANTXR1Q9H6X2 564 aa26.18■■□□□ 1.78
SMC4-221ENST00000489573 AKAP11Q9UKA4 1901 aa26.18■■□□□ 1.78
SMC4-221ENST00000489573 GYG1P46976 350 aa26.17■■□□□ 1.78
SMC4-221ENST00000489573 STYK1Q6J9G0 422 aa26.17■■□□□ 1.78
SMC4-221ENST00000489573 GNL3LQ9NVN8 582 aaKnown RBP26.17■■□□□ 1.78
SMC4-221ENST00000489573 HMG20BQ9P0W2 317 aa26.17■■□□□ 1.78
SMC4-221ENST00000489573 GPSM2P81274 684 aa26.16■■□□□ 1.78
SMC4-221ENST00000489573 RASGRF1Q13972 1273 aa26.16■■□□□ 1.78
SMC4-221ENST00000489573 SP8Q8IXZ3 490 aa26.16■■□□□ 1.78
SMC4-221ENST00000489573 ANO2Q9NQ90 1003 aa26.16■■□□□ 1.78
SMC4-221ENST00000489573 TTF1Q15361 905 aaPredicted RBP26.16■■□□□ 1.78
SMC4-221ENST00000489573 LRRFIP1Q32MZ4 808 aaKnown RBP26.16■■□□□ 1.78
SMC4-221ENST00000489573 VPS37DQ86XT2 251 aa26.16■■□□□ 1.78
SMC4-221ENST00000489573 SPATA5Q8NB90 893 aa26.16■■□□□ 1.78
SMC4-221ENST00000489573 FAM84BQ96KN1 310 aaPredicted RBP26.16■■□□□ 1.78
SMC4-221ENST00000489573 FAM227BQ96M60 508 aa26.16■■□□□ 1.78
SMC4-221ENST00000489573 ATP6V0A2Q9Y487 856 aa26.16■■□□□ 1.78
SMC4-221ENST00000489573 A0A0D9SFI3 127 aa26.15■■□□□ 1.78
SMC4-221ENST00000489573 ATP2B4P23634 1241 aa26.15■■□□□ 1.78
SMC4-221ENST00000489573 KLRK1P26718 216 aa26.15■■□□□ 1.78
SMC4-221ENST00000489573 R3HDM1Q15032 1099 aaKnown RBP26.15■■□□□ 1.78
SMC4-221ENST00000489573 FBXO33Q7Z6M2 555 aa26.15■■□□□ 1.78
SMC4-221ENST00000489573 ZNF622Q969S3 477 aaKnown RBP eCLIP26.15■■□□□ 1.782e-7■■□□□ 13.9
SMC4-221ENST00000489573 PODXL2Q9NZ53 605 aa26.15■■□□□ 1.78
SMC4-221ENST00000489573 IRS2Q9Y4H2 1338 aa26.14■■□□□ 1.78
SMC4-221ENST00000489573 EPB41L2O43491 1005 aaKnown RBP26.14■■□□□ 1.78
SMC4-221ENST00000489573 ZBTB7AO95365 584 aa26.14■■□□□ 1.78
SMC4-221ENST00000489573 CYP2E1P05181 493 aaPredicted RBP26.14■■□□□ 1.78
SMC4-221ENST00000489573 MTFR1LQ9H019 292 aa26.14■■□□□ 1.78
SMC4-221ENST00000489573 NSFL1CQ9UNZ2 370 aaKnown RBP26.14■■□□□ 1.78
SMC4-221ENST00000489573 GGA1Q9UJY5 639 aa26.13■■□□□ 1.77
SMC4-221ENST00000489573 KIAA1211Q6ZU35 1233 aa26.12■■□□□ 1.77
SMC4-221ENST00000489573 C15orf52Q6ZUT6 534 aaKnown RBP26.12■■□□□ 1.77
SMC4-221ENST00000489573 RNF113AO15541 343 aaKnown RBP26.12■■□□□ 1.77
SMC4-221ENST00000489573 UFL1O94874 794 aa26.12■■□□□ 1.77
SMC4-221ENST00000489573 CHRNA5P30532 468 aa26.12■■□□□ 1.77
SMC4-221ENST00000489573 HIBADHP31937 336 aaKnown RBP26.12■■□□□ 1.77
SMC4-221ENST00000489573 PIH1D3Q9NQM4 214 aaKnown RBP26.12■■□□□ 1.77
SMC4-221ENST00000489573 MED23Q9ULK4 1368 aa26.12■■□□□ 1.77
SMC4-221ENST00000489573 SEMA3EO15041 775 aa26.11■■□□□ 1.77
SMC4-221ENST00000489573 ZFYP08048 801 aaPredicted RBP26.11■■□□□ 1.77
SMC4-221ENST00000489573 POLD1P28340 1107 aa26.11■■□□□ 1.77
SMC4-221ENST00000489573 CNKSR1Q969H4 720 aa26.11■■□□□ 1.77
SMC4-221ENST00000489573 DDX24Q9GZR7 859 aaKnown RBP eCLIP26.11■■□□□ 1.77
SMC4-221ENST00000489573 LTBP1Q14766 1721 aa26.11■■□□□ 1.77
SMC4-221ENST00000489573 LSG1Q9H089 658 aaKnown RBP26.1■■□□□ 1.77
SMC4-221ENST00000489573 DENND2AQ9ULE3 1009 aa26.1■■□□□ 1.77
SMC4-221ENST00000489573 ZBTB22O15209 634 aa26.09■■□□□ 1.77
SMC4-221ENST00000489573 ZMYM1Q5SVZ6 1142 aa26.09■■□□□ 1.77
SMC4-221ENST00000489573 ZSCAN25Q6NSZ9 544 aa26.09■■□□□ 1.77
SMC4-221ENST00000489573 TXNRD3Q86VQ6 643 aa26.09■■□□□ 1.77
SMC4-221ENST00000489573 TMX4Q9H1E5 349 aaPredicted RBP26.09■■□□□ 1.77
SMC4-221ENST00000489573 HELLSQ9NRZ9 838 aa26.09■■□□□ 1.77
SMC4-221ENST00000489573 IQSEC3Q9UPP2 1182 aaPredicted RBP26.09■■□□□ 1.77
SMC4-221ENST00000489573 ATF5Q9Y2D1 282 aaPredicted RBP26.09■■□□□ 1.77
SMC4-221ENST00000489573 COL1A1P02452 1464 aaPredicted RBP26.09■■□□□ 1.77
SMC4-221ENST00000489573 CHGBP05060 677 aa26.08■■□□□ 1.77
SMC4-221ENST00000489573 MCCP23508 829 aa26.08■■□□□ 1.77
SMC4-221ENST00000489573 MCMDC2Q4G0Z9 681 aa26.08■■□□□ 1.77
SMC4-221ENST00000489573 TBC1D16Q8TBP0 767 aa26.08■■□□□ 1.77
SMC4-221ENST00000489573 DDRGK1Q96HY6 314 aa26.08■■□□□ 1.77
SMC4-221ENST00000489573 PRPF40BQ6NWY9 871 aaKnown RBP26.07■■□□□ 1.76
SMC4-221ENST00000489573 PDS5AQ29RF7 1337 aaKnown RBP26.07■■□□□ 1.76
SMC4-221ENST00000489573 IDH1O75874 414 aaKnown RBP26.07■■□□□ 1.76
SMC4-221ENST00000489573 ZNF804AQ7Z570 1209 aa26.07■■□□□ 1.76
SMC4-221ENST00000489573 POLLQ9UGP5 575 aa26.07■■□□□ 1.76
SMC4-221ENST00000489573 CCDC171Q6TFL3 1326 aa26.06■■□□□ 1.76
SMC4-221ENST00000489573 ZNF589Q86UQ0 364 aaPredicted RBP26.06■■□□□ 1.76
SMC4-221ENST00000489573 GPR101Q96P66 508 aaPredicted RBP26.06■■□□□ 1.76
SMC4-221ENST00000489573 DLEC1Q9Y238 1755 aa26.06■■□□□ 1.76
SMC4-221ENST00000489573 DOCK2Q92608 1830 aa26.06■■□□□ 1.76
SMC4-221ENST00000489573 KIF13BQ9NQT8 1826 aa26.06■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms