RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 CDCA7LQ96GN5 454 aa29.13■■■□□ 2.25
COL9A3-213ENST00000489045 ZNF408Q9H9D4 720 aa29.13■■■□□ 2.25
COL9A3-213ENST00000489045 KLRK1P26718 216 aa29.12■■■□□ 2.25
COL9A3-213ENST00000489045 PAXIP1Q6ZW49 1069 aaPredicted RBP29.12■■■□□ 2.25
COL9A3-213ENST00000489045 SSH1Q8WYL5 1049 aa29.12■■■□□ 2.25
COL9A3-213ENST00000489045 GMLQ99445 158 aa29.12■■■□□ 2.25
COL9A3-213ENST00000489045 COA1Q9GZY4 146 aa29.12■■■□□ 2.25
COL9A3-213ENST00000489045 KCNJ4P48050 445 aa29.11■■■□□ 2.25
COL9A3-213ENST00000489045 ZNF280AP59817 542 aaPredicted RBP29.11■■■□□ 2.25
COL9A3-213ENST00000489045 CYP4F22Q6NT55 531 aa29.1■■■□□ 2.25
COL9A3-213ENST00000489045 DLK2Q6UY11 383 aa29.1■■■□□ 2.25
COL9A3-213ENST00000489045 KRT26Q7Z3Y9 468 aa29.1■■■□□ 2.25
COL9A3-213ENST00000489045 PTPRCP08575 1304 aa29.1■■■□□ 2.25
COL9A3-213ENST00000489045 CCDC57Q2TAC2 916 aa29.09■■■□□ 2.25
COL9A3-213ENST00000489045 SAPCD2Q86UD0 394 aa29.09■■■□□ 2.25
COL9A3-213ENST00000489045 FBXW7Q969H0 707 aa29.09■■■□□ 2.25
COL9A3-213ENST00000489045 DCPSQ96C86 337 aaKnown RBP29.09■■■□□ 2.25
COL9A3-213ENST00000489045 SUCLG2Q96I99 432 aa29.09■■■□□ 2.25
COL9A3-213ENST00000489045 CAPNS2Q96L46 248 aa29.09■■■□□ 2.25
COL9A3-213ENST00000489045 GGA3Q9NZ52 723 aa29.09■■■□□ 2.25
COL9A3-213ENST00000489045 FOXN1O15353 648 aa29.08■■■□□ 2.25
COL9A3-213ENST00000489045 TAF5LO75529 589 aa29.08■■■□□ 2.25
COL9A3-213ENST00000489045 USP17L8P0C7I0 530 aa29.08■■■□□ 2.25
COL9A3-213ENST00000489045 GRM1Q13255 1194 aa29.08■■■□□ 2.25
COL9A3-213ENST00000489045 DACT2Q5SW24 774 aa29.08■■■□□ 2.25
COL9A3-213ENST00000489045 HELBQ8NG08 1087 aaPredicted RBP29.08■■■□□ 2.25
COL9A3-213ENST00000489045 ZNF594Q96JF6 807 aaPredicted RBP29.08■■■□□ 2.25
COL9A3-213ENST00000489045 MXD3Q9BW11 206 aa29.08■■■□□ 2.25
COL9A3-213ENST00000489045 ASTN2O75129 1339 aaPredicted RBP29.08■■■□□ 2.25
COL9A3-213ENST00000489045 ADM5C9JUS6 153 aa29.07■■■□□ 2.24
COL9A3-213ENST00000489045 NBPF7P0C2Y1 421 aaPredicted RBP29.07■■■□□ 2.24
COL9A3-213ENST00000489045 ECE1P42892 770 aa29.07■■■□□ 2.24
COL9A3-213ENST00000489045 TAF7LQ5H9L4 462 aa29.07■■■□□ 2.24
COL9A3-213ENST00000489045 AIDAQ96BJ3 306 aa29.07■■■□□ 2.24
COL9A3-213ENST00000489045 UTYO14607 1347 aa29.06■■■□□ 2.24
COL9A3-213ENST00000489045 SNAP23O00161 211 aa29.06■■■□□ 2.24
COL9A3-213ENST00000489045 STRIP1Q5VSL9 837 aa29.06■■■□□ 2.24
COL9A3-213ENST00000489045 TRMT2AQ8IZ69 625 aaKnown RBP29.06■■■□□ 2.24
COL9A3-213ENST00000489045 KAZALD1Q96I82 304 aa29.06■■■□□ 2.24
COL9A3-213ENST00000489045 MYOZ2Q9NPC6 264 aa29.06■■■□□ 2.24
COL9A3-213ENST00000489045 WBP1LQ9NX94 342 aa29.06■■■□□ 2.24
COL9A3-213ENST00000489045 MYO3BQ8WXR4 1341 aa29.04■■■□□ 2.24
COL9A3-213ENST00000489045 IRS2Q9Y4H2 1338 aa29.04■■■□□ 2.24
COL9A3-213ENST00000489045 SCARF1Q14162 830 aa29.04■■■□□ 2.24
COL9A3-213ENST00000489045 ALDH1L2Q3SY69 923 aa29.04■■■□□ 2.24
COL9A3-213ENST00000489045 LDHAL6AQ6ZMR3 332 aa29.04■■■□□ 2.24
COL9A3-213ENST00000489045 SULF1Q8IWU6 871 aa29.03■■■□□ 2.24
COL9A3-213ENST00000489045 CNNM1Q9NRU3 951 aa29.03■■■□□ 2.24
COL9A3-213ENST00000489045 MAP2K1Q02750 393 aaPredicted RBP29.02■■■□□ 2.24
COL9A3-213ENST00000489045 ANGEL2Q5VTE6 544 aaKnown RBP29.02■■■□□ 2.24
COL9A3-213ENST00000489045 TTLL5Q6EMB2 1281 aa29.02■■■□□ 2.24
COL9A3-213ENST00000489045 C15orf52Q6ZUT6 534 aaKnown RBP29.02■■■□□ 2.24
COL9A3-213ENST00000489045 HHIPL1Q96JK4 782 aa29.02■■■□□ 2.24
COL9A3-213ENST00000489045 SMC4Q9NTJ3 1288 aa29.02■■■□□ 2.24
COL9A3-213ENST00000489045 PLIN1O60240 522 aa29.01■■■□□ 2.23
COL9A3-213ENST00000489045 BICC1Q9H694 974 aaKnown RBP29.01■■■□□ 2.23
COL9A3-213ENST00000489045 CD209Q9NNX6 404 aa29.01■■■□□ 2.23
COL9A3-213ENST00000489045 AOC2O75106 756 aa29■■■□□ 2.23
COL9A3-213ENST00000489045 GTF2IP78347 998 aa29■■■□□ 2.23
COL9A3-213ENST00000489045 TNS4Q8IZW8 715 aa29■■■□□ 2.23
COL9A3-213ENST00000489045 CTCFP49711 727 aaPredicted RBP28.99■■■□□ 2.23
COL9A3-213ENST00000489045 OGFOD1Q8N543 542 aa28.99■■■□□ 2.23
COL9A3-213ENST00000489045 GBA2Q9HCG7 927 aaPredicted RBP28.99■■■□□ 2.23
COL9A3-213ENST00000489045 HUNKP57058 714 aa28.98■■■□□ 2.23
COL9A3-213ENST00000489045 RABL6Q3YEC7 729 aaPredicted RBP28.98■■■□□ 2.23
COL9A3-213ENST00000489045 ZNF804AQ7Z570 1209 aa28.98■■■□□ 2.23
COL9A3-213ENST00000489045 PUS3Q9BZE2 481 aaKnown RBP28.98■■■□□ 2.23
COL9A3-213ENST00000489045 PITPNM2Q9BZ72 1349 aa28.97■■■□□ 2.23
COL9A3-213ENST00000489045 CT47B1P0C2W7 299 aaPredicted RBP28.97■■■□□ 2.23
COL9A3-213ENST00000489045 ANKRD44Q8N8A2 993 aa28.97■■■□□ 2.23
COL9A3-213ENST00000489045 CDCA5Q96FF9 252 aa28.97■■■□□ 2.23
COL9A3-213ENST00000489045 MAP2K2P36507 400 aa28.96■■■□□ 2.23
COL9A3-213ENST00000489045 NBPF9Q3BBW0 867 aa28.96■■■□□ 2.23
COL9A3-213ENST00000489045 KIAA0825Q8IV33 1275 aa28.96■■■□□ 2.23
COL9A3-213ENST00000489045 C2orf69Q8N8R5 385 aa28.96■■■□□ 2.23
COL9A3-213ENST00000489045 USP44Q9H0E7 712 aa28.96■■■□□ 2.23
COL9A3-213ENST00000489045 IL1R1P14778 569 aa28.94■■■□□ 2.22
COL9A3-213ENST00000489045 PRDM10Q9NQV6 1147 aa28.94■■■□□ 2.22
COL9A3-213ENST00000489045 SCAF8Q9UPN6 1271 aaKnown RBP28.94■■■□□ 2.22
COL9A3-213ENST00000489045 ECM29Q5VYK3 1845 aa28.94■■■□□ 2.22
COL9A3-213ENST00000489045 WNT10BO00744 389 aa28.93■■■□□ 2.22
COL9A3-213ENST00000489045 SASH1O94885 1247 aa28.93■■■□□ 2.22
COL9A3-213ENST00000489045 HSPA8P11142 646 aaKnown RBP28.93■■■□□ 2.22
COL9A3-213ENST00000489045 MMP14P50281 582 aa28.93■■■□□ 2.22
COL9A3-213ENST00000489045 LBX1P52954 281 aa28.93■■■□□ 2.22
COL9A3-213ENST00000489045 HDAC9Q9UKV0 1011 aa28.93■■■□□ 2.22
COL9A3-213ENST00000489045 UBE4AQ14139 1066 aa28.92■■■□□ 2.22
COL9A3-213ENST00000489045 CERS5Q8N5B7 392 aa28.92■■■□□ 2.22
COL9A3-213ENST00000489045 BEGAINQ9BUH8 593 aa28.92■■■□□ 2.22
COL9A3-213ENST00000489045 RIPOR2Q9Y4F9 1068 aa28.92■■■□□ 2.22
COL9A3-213ENST00000489045 PAPPA2Q9BXP8 1791 aa28.92■■■□□ 2.22
COL9A3-213ENST00000489045 ARAP2Q8WZ64 1704 aa28.91■■■□□ 2.22
COL9A3-213ENST00000489045 NOB1Q9ULX3 412 aaKnown RBP28.91■■■□□ 2.22
COL9A3-213ENST00000489045 MROH5Q6ZUA9 1318 aa28.91■■■□□ 2.22
COL9A3-213ENST00000489045 RGMBQ6NW40 437 aa28.9■■■□□ 2.22
COL9A3-213ENST00000489045 LRRC24Q50LG9 513 aa28.89■■■□□ 2.22
COL9A3-213ENST00000489045 JAG2Q9Y219 1238 aa28.89■■■□□ 2.22
COL9A3-213ENST00000489045 BRPF1P55201 1214 aaPredicted RBP28.88■■■□□ 2.21
COL9A3-213ENST00000489045 NOGQ13253 232 aa28.88■■■□□ 2.21
COL9A3-213ENST00000489045 GYG1P46976 350 aa28.87■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms