RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 MYOZ2Q9NPC6 264 aa23.58■■□□□ 1.37
HDAC6-231ENST00000488905 WTIPA6NIX2 430 aaPredicted RBP23.57■■□□□ 1.36
HDAC6-231ENST00000488905 CCT4P50991 539 aaKnown RBP23.57■■□□□ 1.36
HDAC6-231ENST00000488905 SCARF1Q14162 830 aa23.57■■□□□ 1.36
HDAC6-231ENST00000488905 GCKRQ14397 625 aa23.57■■□□□ 1.36
HDAC6-231ENST00000488905 MRS2Q9HD23 443 aa23.57■■□□□ 1.36
HDAC6-231ENST00000488905 FKBP5Q13451 457 aaPredicted RBP23.56■■□□□ 1.36
HDAC6-231ENST00000488905 PLA2G12BQ9BX93 195 aa23.56■■□□□ 1.36
HDAC6-231ENST00000488905 PITPNM2Q9BZ72 1349 aa23.56■■□□□ 1.36
HDAC6-231ENST00000488905 IGHMBP2P38935 993 aaKnown RBP23.55■■□□□ 1.36
HDAC6-231ENST00000488905 ZNF157P51786 506 aaPredicted RBP23.55■■□□□ 1.36
HDAC6-231ENST00000488905 FAM161AQ3B820 660 aa23.55■■□□□ 1.36
HDAC6-231ENST00000488905 DNAAF4Q8WXU2 420 aa23.55■■□□□ 1.36
HDAC6-231ENST00000488905 CCDC102AQ96A19 550 aa23.55■■□□□ 1.36
HDAC6-231ENST00000488905 MYH16Q9H6N6 1097 aa23.55■■□□□ 1.36
HDAC6-231ENST00000488905 ITGA6P23229 1130 aa23.54■■□□□ 1.36
HDAC6-231ENST00000488905 CASP7P55210 303 aa23.54■■□□□ 1.36
HDAC6-231ENST00000488905 SLC10A3P09131 477 aa23.53■■□□□ 1.36
HDAC6-231ENST00000488905 DACT2Q5SW24 774 aa23.53■■□□□ 1.36
HDAC6-231ENST00000488905 LINS1Q8NG48 757 aa23.53■■□□□ 1.36
HDAC6-231ENST00000488905 COA1Q9GZY4 146 aa23.53■■□□□ 1.36
HDAC6-231ENST00000488905 LEMD3Q9Y2U8 911 aa23.53■■□□□ 1.36
HDAC6-231ENST00000488905 MYO3BQ8WXR4 1341 aa23.53■■□□□ 1.36
HDAC6-231ENST00000488905 ECM29Q5VYK3 1845 aa23.52■■□□□ 1.36
HDAC6-231ENST00000488905 SAGE1Q9NXZ1 904 aa23.52■■□□□ 1.36
HDAC6-231ENST00000488905 KIF23Q02241 960 aaPredicted RBP23.51■■□□□ 1.35
HDAC6-231ENST00000488905 STRIP1Q5VSL9 837 aa23.51■■□□□ 1.35
HDAC6-231ENST00000488905 TXNRD3Q86VQ6 643 aa23.51■■□□□ 1.35
HDAC6-231ENST00000488905 WDR63Q8IWG1 891 aa23.51■■□□□ 1.35
HDAC6-231ENST00000488905 FBXW7Q969H0 707 aa23.51■■□□□ 1.35
HDAC6-231ENST00000488905 MPHOSPH8Q99549 860 aa23.51■■□□□ 1.35
HDAC6-231ENST00000488905 MXD3Q9BW11 206 aa23.51■■□□□ 1.35
HDAC6-231ENST00000488905 MCOLN1Q9GZU1 580 aa23.51■■□□□ 1.35
HDAC6-231ENST00000488905 CSF1RP07333 972 aa23.5■■□□□ 1.35
HDAC6-231ENST00000488905 FKBP1BP68106 108 aa23.5■■□□□ 1.35
HDAC6-231ENST00000488905 ANKRD2Q9GZV1 360 aa23.5■■□□□ 1.35
HDAC6-231ENST00000488905 ZNF804BA4D1E1 1349 aa23.5■■□□□ 1.35
HDAC6-231ENST00000488905 CCDC85CA6NKD9 419 aa23.49■■□□□ 1.35
HDAC6-231ENST00000488905 ANP32CO43423 234 aa23.49■■□□□ 1.35
HDAC6-231ENST00000488905 VAMP4O75379 141 aa23.49■■□□□ 1.35
HDAC6-231ENST00000488905 KLRK1P26718 216 aa23.49■■□□□ 1.35
HDAC6-231ENST00000488905 NBPF9Q3BBW0 867 aa23.49■■□□□ 1.35
HDAC6-231ENST00000488905 OGFOD1Q8N543 542 aa23.49■■□□□ 1.35
HDAC6-231ENST00000488905 SALL2Q9Y467 1007 aaPredicted RBP23.49■■□□□ 1.35
HDAC6-231ENST00000488905 EXOSC9Q06265 439 aaKnown RBP23.48■■□□□ 1.35
HDAC6-231ENST00000488905 RASAL3Q86YV0 1011 aa23.48■■□□□ 1.35
HDAC6-231ENST00000488905 SCAF8Q9UPN6 1271 aaKnown RBP23.48■■□□□ 1.35
HDAC6-231ENST00000488905 CHRNDQ07001 517 aa23.47■■□□□ 1.35
HDAC6-231ENST00000488905 WNT10BO00744 389 aa23.46■■□□□ 1.35
HDAC6-231ENST00000488905 KCNJ4P48050 445 aa23.46■■□□□ 1.35
HDAC6-231ENST00000488905 DGKZQ13574 1117 aa23.46■■□□□ 1.35
HDAC6-231ENST00000488905 ANKRD18BA2A2Z9 1011 aa23.45■■□□□ 1.34
HDAC6-231ENST00000488905 MMP14P50281 582 aa23.45■■□□□ 1.34
HDAC6-231ENST00000488905 CSRNP1Q96S65 589 aa23.45■■□□□ 1.34
HDAC6-231ENST00000488905 RNF186Q9NXI6 227 aa23.45■■□□□ 1.34
HDAC6-231ENST00000488905 F6X3S4 739 aa23.44■■□□□ 1.34
HDAC6-231ENST00000488905 TRPA1O75762 1119 aa23.44■■□□□ 1.34
HDAC6-231ENST00000488905 SASH1O94885 1247 aa23.44■■□□□ 1.34
HDAC6-231ENST00000488905 BEND3Q5T5X7 828 aa23.44■■□□□ 1.34
HDAC6-231ENST00000488905 TTLL5Q6EMB2 1281 aa23.44■■□□□ 1.34
HDAC6-231ENST00000488905 SPINK5Q9NQ38 1064 aaPredicted RBP23.44■■□□□ 1.34
HDAC6-231ENST00000488905 IRS2Q9Y4H2 1338 aa23.43■■□□□ 1.34
HDAC6-231ENST00000488905 FOXO4P98177 505 aa23.43■■□□□ 1.34
HDAC6-231ENST00000488905 MOB2Q70IA6 237 aa23.43■■□□□ 1.34
HDAC6-231ENST00000488905 REM2Q8IYK8 340 aaPredicted RBP23.43■■□□□ 1.34
HDAC6-231ENST00000488905 ARAP2Q8WZ64 1704 aa23.42■■□□□ 1.34
HDAC6-231ENST00000488905 GTF2IP78347 998 aa23.42■■□□□ 1.34
HDAC6-231ENST00000488905 IFIT5Q13325 482 aaKnown RBP23.42■■□□□ 1.34
HDAC6-231ENST00000488905 PRAMEF18Q5VWM3 479 aa23.42■■□□□ 1.34
HDAC6-231ENST00000488905 KIAA0825Q8IV33 1275 aa23.42■■□□□ 1.34
HDAC6-231ENST00000488905 HDAC9Q9UKV0 1011 aa23.42■■□□□ 1.34
HDAC6-231ENST00000488905 CHMP3Q9Y3E7 222 aa23.42■■□□□ 1.34
HDAC6-231ENST00000488905 TNRC18O15417 2968 aaPredicted RBP23.41■■□□□ 1.34
HDAC6-231ENST00000488905 CD209Q9NNX6 404 aa23.41■■□□□ 1.34
HDAC6-231ENST00000488905 COL1A1P02452 1464 aaPredicted RBP23.41■■□□□ 1.34
HDAC6-231ENST00000488905 SNAP23O00161 211 aa23.4■■□□□ 1.34
HDAC6-231ENST00000488905 ZEB1P37275 1124 aaPredicted RBP23.4■■□□□ 1.34
HDAC6-231ENST00000488905 C15orf52Q6ZUT6 534 aaKnown RBP23.4■■□□□ 1.34
HDAC6-231ENST00000488905 APOBEC3FQ8IUX4 373 aaKnown RBP23.4■■□□□ 1.34
HDAC6-231ENST00000488905 ZNF316A6NFI3 1004 aaPredicted RBP23.39■■□□□ 1.33
HDAC6-231ENST00000488905 UBE2Q2LH0YL09 131 aa23.39■■□□□ 1.33
HDAC6-231ENST00000488905 GRM8O00222 908 aa23.39■■□□□ 1.33
HDAC6-231ENST00000488905 TAF5LO75529 589 aa23.39■■□□□ 1.33
HDAC6-231ENST00000488905 NF2P35240 595 aa23.39■■□□□ 1.33
HDAC6-231ENST00000488905 RGS19P49795 217 aa23.39■■□□□ 1.33
HDAC6-231ENST00000488905 TTLL12Q14166 644 aaPredicted RBP23.39■■□□□ 1.33
HDAC6-231ENST00000488905 HELBQ8NG08 1087 aaPredicted RBP23.39■■□□□ 1.33
HDAC6-231ENST00000488905 ZBED3Q96IU2 234 aaPredicted RBP23.39■■□□□ 1.33
HDAC6-231ENST00000488905 LAMB1P07942 1786 aa23.39■■□□□ 1.33
HDAC6-231ENST00000488905 MLLT1Q03111 559 aaPredicted RBP23.38■■□□□ 1.33
HDAC6-231ENST00000488905 LMBR1LQ6UX01 489 aa23.38■■□□□ 1.33
HDAC6-231ENST00000488905 EPHA10Q5JZY3 1008 aa23.37■■□□□ 1.33
HDAC6-231ENST00000488905 ZNF804AQ7Z570 1209 aa23.37■■□□□ 1.33
HDAC6-231ENST00000488905 CERS5Q8N5B7 392 aa23.37■■□□□ 1.33
HDAC6-231ENST00000488905 CCDC57Q2TAC2 916 aa23.36■■□□□ 1.33
HDAC6-231ENST00000488905 IL1R1P14778 569 aa23.35■■□□□ 1.33
HDAC6-231ENST00000488905 TAF7LQ5H9L4 462 aa23.35■■□□□ 1.33
HDAC6-231ENST00000488905 FAM9BQ8IZU0 186 aa23.35■■□□□ 1.33
HDAC6-231ENST00000488905 ALDH1L1O75891 902 aa23.34■■□□□ 1.33
HDAC6-231ENST00000488905 DLGAP5Q15398 846 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms