RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 DHX32Q7L7V1 743 aaKnown RBP18.75■□□□□ 0.59
COL7A1-210ENST00000487017 CCDC94Q9BW85 323 aaPredicted RBP18.74■□□□□ 0.59
COL7A1-210ENST00000487017 NPC1L1Q9UHC9 1359 aa18.74■□□□□ 0.59
COL7A1-210ENST00000487017 BRAPQ7Z569 592 aa18.74■□□□□ 0.59
COL7A1-210ENST00000487017 GOLGA1Q92805 767 aa18.74■□□□□ 0.59
COL7A1-210ENST00000487017 RNF216Q9NWF9 866 aaPredicted RBP18.74■□□□□ 0.59
COL7A1-210ENST00000487017 RIMS2Q9UQ26 1411 aa18.74■□□□□ 0.59
COL7A1-210ENST00000487017 PSMA7O14818 248 aa18.74■□□□□ 0.59
COL7A1-210ENST00000487017 CTAGE9A4FU28 777 aa18.74■□□□□ 0.59
COL7A1-210ENST00000487017 DHX58Q96C10 678 aa18.73■□□□□ 0.59
COL7A1-210ENST00000487017 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.73■□□□□ 0.59
COL7A1-210ENST00000487017 V9GYY5 206 aaPredicted RBP18.73■□□□□ 0.59
COL7A1-210ENST00000487017 TRIM75PA6NK02 468 aa18.73■□□□□ 0.59
COL7A1-210ENST00000487017 GSTO1P78417 241 aa18.73■□□□□ 0.59
COL7A1-210ENST00000487017 SLC4A8Q2Y0W8 1093 aa18.73■□□□□ 0.59
COL7A1-210ENST00000487017 HOOK3Q86VS8 718 aa18.73■□□□□ 0.59
COL7A1-210ENST00000487017 RBSNQ9H1K0 784 aa18.73■□□□□ 0.59
COL7A1-210ENST00000487017 CHRNA2Q15822 529 aa18.73■□□□□ 0.59
COL7A1-210ENST00000487017 CWF19L2Q2TBE0 894 aaKnown RBP18.73■□□□□ 0.59
COL7A1-210ENST00000487017 GIGYF2Q6Y7W6 1299 aaKnown RBP18.73■□□□□ 0.59
COL7A1-210ENST00000487017 STX8Q9UNK0 236 aa18.73■□□□□ 0.59
COL7A1-210ENST00000487017 PZPP20742 1482 aa18.73■□□□□ 0.59
COL7A1-210ENST00000487017 WDR62O43379 1518 aa18.73■□□□□ 0.59
COL7A1-210ENST00000487017 MCM6Q14566 821 aa18.73■□□□□ 0.59
COL7A1-210ENST00000487017 TRMT1LQ7Z2T5 733 aaKnown RBP18.73■□□□□ 0.59
COL7A1-210ENST00000487017 UHRF1BP1LA0JNW5 1464 aa18.72■□□□□ 0.59
COL7A1-210ENST00000487017 ATL3Q6DD88 541 aa18.72■□□□□ 0.59
COL7A1-210ENST00000487017 IFNKQ9P0W0 207 aa18.72■□□□□ 0.59
COL7A1-210ENST00000487017 TSPY3P0CV98 308 aa18.72■□□□□ 0.59
COL7A1-210ENST00000487017 TSPY8P0CW00 308 aa18.72■□□□□ 0.59
COL7A1-210ENST00000487017 IVLP07476 585 aa18.72■□□□□ 0.59
COL7A1-210ENST00000487017 UBE4AQ14139 1066 aa18.72■□□□□ 0.59
COL7A1-210ENST00000487017 DNAI2Q9GZS0 605 aa18.72■□□□□ 0.59
COL7A1-210ENST00000487017 C6orf229H3BNL8 230 aa18.71■□□□□ 0.59
COL7A1-210ENST00000487017 GNAQP50148 359 aa18.71■□□□□ 0.59
COL7A1-210ENST00000487017 SPECC1LQ69YQ0 1117 aa18.71■□□□□ 0.59
COL7A1-210ENST00000487017 CHST3Q7LGC8 479 aa18.71■□□□□ 0.59
COL7A1-210ENST00000487017 TFCP2Q12800 502 aa18.71■□□□□ 0.59
COL7A1-210ENST00000487017 SYCP3Q8IZU3 236 aa18.71■□□□□ 0.59
COL7A1-210ENST00000487017 TRAPPC8Q9Y2L5 1435 aa18.71■□□□□ 0.59
COL7A1-210ENST00000487017 TBCAO75347 108 aaKnown RBP18.71■□□□□ 0.59
COL7A1-210ENST00000487017 CCDC172P0C7W6 258 aa18.71■□□□□ 0.59
COL7A1-210ENST00000487017 RNF123Q5XPI4 1314 aa18.71■□□□□ 0.59
COL7A1-210ENST00000487017 ZNF518AQ6AHZ1 1483 aa18.71■□□□□ 0.59
COL7A1-210ENST00000487017 PPM1FP49593 454 aaPredicted RBP18.71■□□□□ 0.59
COL7A1-210ENST00000487017 ZCRB1Q8TBF4 217 aaKnown RBP18.71■□□□□ 0.59
COL7A1-210ENST00000487017 TACC1O75410 805 aa18.71■□□□□ 0.59
COL7A1-210ENST00000487017 KRT83P78385 493 aa18.71■□□□□ 0.59
COL7A1-210ENST00000487017 SPAG5Q96R06 1193 aa18.71■□□□□ 0.59
COL7A1-210ENST00000487017 HLA-DOAP06340 250 aa18.7■□□□□ 0.58
COL7A1-210ENST00000487017 RTL9Q8NET4 1388 aa18.7■□□□□ 0.58
COL7A1-210ENST00000487017 MYCNP04198 464 aaPredicted RBP18.7■□□□□ 0.58
COL7A1-210ENST00000487017 CTNNA2P26232 953 aa18.7■□□□□ 0.58
COL7A1-210ENST00000487017 TUBB4BP68371 445 aa18.7■□□□□ 0.58
COL7A1-210ENST00000487017 INSRP06213 1382 aa18.7■□□□□ 0.58
COL7A1-210ENST00000487017 DNMT1P26358 1616 aaKnown RBP18.7■□□□□ 0.58
COL7A1-210ENST00000487017 KIAA0556O60303 1618 aa18.7■□□□□ 0.58
COL7A1-210ENST00000487017 ERMNQ8TAM6 284 aa18.7■□□□□ 0.58
COL7A1-210ENST00000487017 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.7■□□□□ 0.58
COL7A1-210ENST00000487017 CALM1P0DP23 149 aa18.69■□□□□ 0.58
COL7A1-210ENST00000487017 CALM2P0DP24 149 aa18.69■□□□□ 0.58
COL7A1-210ENST00000487017 CALM3P0DP25 149 aa18.69■□□□□ 0.58
COL7A1-210ENST00000487017 GNAT2P19087 354 aa18.69■□□□□ 0.58
COL7A1-210ENST00000487017 SYT10Q6XYQ8 523 aa18.69■□□□□ 0.58
COL7A1-210ENST00000487017 HEATR3Q7Z4Q2 680 aa18.69■□□□□ 0.58
COL7A1-210ENST00000487017 ASIC1P78348 528 aa18.69■□□□□ 0.58
COL7A1-210ENST00000487017 KIAA0753Q2KHM9 967 aa18.69■□□□□ 0.58
COL7A1-210ENST00000487017 WDR78Q5VTH9 848 aa18.69■□□□□ 0.58
COL7A1-210ENST00000487017 DNAJC5BQ9UF47 199 aa18.69■□□□□ 0.58
COL7A1-210ENST00000487017 GTPBP4Q9BZE4 634 aaKnown RBP18.69■□□□□ 0.58
COL7A1-210ENST00000487017 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.69■□□□□ 0.58
COL7A1-210ENST00000487017 OTUD7AQ8TE49 926 aaPredicted RBP18.69■□□□□ 0.58
COL7A1-210ENST00000487017 DRC1Q96MC2 740 aa18.69■□□□□ 0.58
COL7A1-210ENST00000487017 BLMP54132 1417 aaPredicted RBP18.69■□□□□ 0.58
COL7A1-210ENST00000487017 KRT86O43790 486 aa18.69■□□□□ 0.58
COL7A1-210ENST00000487017 EYA1Q99502 592 aa18.69■□□□□ 0.58
COL7A1-210ENST00000487017 ADAMTS2O95450 1211 aa18.68■□□□□ 0.58
COL7A1-210ENST00000487017 BICC1Q9H694 974 aaKnown RBP18.68■□□□□ 0.58
COL7A1-210ENST00000487017 KRT2P35908 639 aa18.68■□□□□ 0.58
COL7A1-210ENST00000487017 NAA16Q6N069 864 aaPredicted RBP18.68■□□□□ 0.58
COL7A1-210ENST00000487017 OPA1O60313 960 aa18.68■□□□□ 0.58
COL7A1-210ENST00000487017 CPA1P15085 419 aa18.68■□□□□ 0.58
COL7A1-210ENST00000487017 RPS6KB1P23443 525 aa18.68■□□□□ 0.58
COL7A1-210ENST00000487017 BBXQ8WY36 941 aaPredicted RBP18.68■□□□□ 0.58
COL7A1-210ENST00000487017 AOX1Q06278 1338 aa18.68■□□□□ 0.58
COL7A1-210ENST00000487017 FAM160A1Q05DH4 1040 aa18.68■□□□□ 0.58
COL7A1-210ENST00000487017 TBC1D5Q92609 795 aa18.68■□□□□ 0.58
COL7A1-210ENST00000487017 SELENOOQ9BVL4 669 aa18.68■□□□□ 0.58
COL7A1-210ENST00000487017 ZNF219Q9P2Y4 722 aaPredicted RBP18.68■□□□□ 0.58
COL7A1-210ENST00000487017 RRAGDQ9NQL2 400 aaPredicted RBP18.67■□□□□ 0.58
COL7A1-210ENST00000487017 HELLSQ9NRZ9 838 aa18.67■□□□□ 0.58
COL7A1-210ENST00000487017 ZNF445P59923 1031 aa18.67■□□□□ 0.58
COL7A1-210ENST00000487017 KIF5AQ12840 1032 aa18.67■□□□□ 0.58
COL7A1-210ENST00000487017 ZFP91Q96JP5 570 aaPredicted RBP18.67■□□□□ 0.58
COL7A1-210ENST00000487017 CABP5Q9NP86 173 aa18.67■□□□□ 0.58
COL7A1-210ENST00000487017 CALML3P27482 149 aa18.67■□□□□ 0.58
COL7A1-210ENST00000487017 KARSQ15046 597 aaKnown RBP18.67■□□□□ 0.58
COL7A1-210ENST00000487017 G2E3Q7L622 706 aa18.67■□□□□ 0.58
COL7A1-210ENST00000487017 IQSEC3Q9UPP2 1182 aaPredicted RBP18.67■□□□□ 0.58
COL7A1-210ENST00000487017 FSD2A1L4K1 749 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms