RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 TULP1O00294 542 aaPredicted RBP14.35□□□□□ -0.11
SHROOM3-208ENST00000486758 RXRAP19793 462 aa14.35□□□□□ -0.11
SHROOM3-208ENST00000486758 GPS2Q13227 327 aa14.35□□□□□ -0.11
SHROOM3-208ENST00000486758 ANKRD1Q15327 319 aa14.35□□□□□ -0.11
SHROOM3-208ENST00000486758 SYNE3Q6ZMZ3 975 aa14.35□□□□□ -0.11
SHROOM3-208ENST00000486758 C3P01024 1663 aa14.35□□□□□ -0.11
SHROOM3-208ENST00000486758 TMEM94Q12767 1356 aa14.35□□□□□ -0.11
SHROOM3-208ENST00000486758 PLEKHG1Q9ULL1 1385 aa14.35□□□□□ -0.11
SHROOM3-208ENST00000486758 EPHA10Q5JZY3 1008 aa14.35□□□□□ -0.11
SHROOM3-208ENST00000486758 CCDC158Q5M9N0 1113 aa14.35□□□□□ -0.11
SHROOM3-208ENST00000486758 VPS53Q5VIR6 699 aa14.35□□□□□ -0.11
SHROOM3-208ENST00000486758 NEK11Q8NG66 645 aa14.35□□□□□ -0.11
SHROOM3-208ENST00000486758 STX1AQ16623 288 aa14.34□□□□□ -0.11
SHROOM3-208ENST00000486758 HELBQ8NG08 1087 aaPredicted RBP14.34□□□□□ -0.11
SHROOM3-208ENST00000486758 STAP2Q9UGK3 403 aa14.34□□□□□ -0.11
SHROOM3-208ENST00000486758 TTC41PQ6P2S7 1318 aa14.34□□□□□ -0.11
SHROOM3-208ENST00000486758 A0A1B0GVL5 298 aa14.34□□□□□ -0.11
SHROOM3-208ENST00000486758 SASH1O94885 1247 aa14.34□□□□□ -0.11
SHROOM3-208ENST00000486758 FBXO38Q6PIJ6 1188 aa14.34□□□□□ -0.11
SHROOM3-208ENST00000486758 ANO10Q9NW15 660 aa14.34□□□□□ -0.11
SHROOM3-208ENST00000486758 IFNKQ9P0W0 207 aa14.34□□□□□ -0.11
SHROOM3-208ENST00000486758 RPAP1Q9BWH6 1393 aaPredicted RBP14.34□□□□□ -0.11
SHROOM3-208ENST00000486758 RXRBP28702 533 aa14.34□□□□□ -0.11
SHROOM3-208ENST00000486758 GCKRQ14397 625 aa14.34□□□□□ -0.11
SHROOM3-208ENST00000486758 BMS1Q14692 1282 aaKnown RBP14.34□□□□□ -0.11
SHROOM3-208ENST00000486758 CTNNA3Q9UI47 895 aa14.34□□□□□ -0.11
SHROOM3-208ENST00000486758 IQSEC3Q9UPP2 1182 aaPredicted RBP14.34□□□□□ -0.11
SHROOM3-208ENST00000486758 C11orf57Q6ZUT1 292 aaPredicted RBP14.33□□□□□ -0.11
SHROOM3-208ENST00000486758 PES1O00541 588 aaKnown RBP14.33□□□□□ -0.12
SHROOM3-208ENST00000486758 LMAN1P49257 510 aa14.33□□□□□ -0.12
SHROOM3-208ENST00000486758 METTL24Q5JXM2 366 aa14.33□□□□□ -0.12
SHROOM3-208ENST00000486758 FAM89AQ96GI7 184 aa14.33□□□□□ -0.12
SHROOM3-208ENST00000486758 KMT5BQ4FZB7 885 aa14.33□□□□□ -0.12
SHROOM3-208ENST00000486758 TTLL7Q6ZT98 887 aa14.33□□□□□ -0.12
SHROOM3-208ENST00000486758 C10orf67Q8IYJ2 551 aa14.33□□□□□ -0.12
SHROOM3-208ENST00000486758 LRRC8AQ8IWT6 810 aa14.32□□□□□ -0.12
SHROOM3-208ENST00000486758 CLSTN2Q9H4D0 955 aa14.32□□□□□ -0.12
SHROOM3-208ENST00000486758 NEURL1BA8MQ27 555 aa14.32□□□□□ -0.12
SHROOM3-208ENST00000486758 GABPB1Q06547 395 aaPredicted RBP14.32□□□□□ -0.12
SHROOM3-208ENST00000486758 CEP170BQ9Y4F5 1589 aaPredicted RBP14.32□□□□□ -0.12
SHROOM3-208ENST00000486758 PTPRUQ92729 1446 aa14.32□□□□□ -0.12
SHROOM3-208ENST00000486758 ADAMTS13Q76LX8 1427 aa14.31□□□□□ -0.12
SHROOM3-208ENST00000486758 TNNI3KQ59H18 835 aa14.31□□□□□ -0.12
SHROOM3-208ENST00000486758 FPGT-TNNI3KV9GXZ4 949 aa14.31□□□□□ -0.12
SHROOM3-208ENST00000486758 GOLGA8FQ08AF8 430 aa14.31□□□□□ -0.12
SHROOM3-208ENST00000486758 GOLGA8DPQ0D2H9 430 aa14.31□□□□□ -0.12
SHROOM3-208ENST00000486758 ZNF772Q68DY9 489 aaPredicted RBP14.31□□□□□ -0.12
SHROOM3-208ENST00000486758 KIF6Q6ZMV9 814 aa14.31□□□□□ -0.12
SHROOM3-208ENST00000486758 ZNF396Q96N95 335 aaPredicted RBP14.31□□□□□ -0.12
SHROOM3-208ENST00000486758 RNF216Q9NWF9 866 aaPredicted RBP14.31□□□□□ -0.12
SHROOM3-208ENST00000486758 CWC25Q9NXE8 425 aaPredicted RBP14.31□□□□□ -0.12
SHROOM3-208ENST00000486758 OVOS2A0A0J9YW53 1432 aa14.31□□□□□ -0.12
SHROOM3-208ENST00000486758 OVOS2Q6IE36 1432 aa14.31□□□□□ -0.12
SHROOM3-208ENST00000486758 ARHGEF25Q86VW2 580 aa14.3□□□□□ -0.12
SHROOM3-208ENST00000486758 ERO1AQ96HE7 468 aa14.3□□□□□ -0.12
SHROOM3-208ENST00000486758 SLC52A2Q9HAB3 445 aa14.3□□□□□ -0.12
SHROOM3-208ENST00000486758 DBNLQ9UJU6 430 aaKnown RBP14.3□□□□□ -0.12
SHROOM3-208ENST00000486758 DDX41Q9UJV9 622 aaKnown RBP14.3□□□□□ -0.12
SHROOM3-208ENST00000486758 DCAF8L1A6NGE4 600 aa14.3□□□□□ -0.12
SHROOM3-208ENST00000486758 KRT32Q14532 448 aa14.3□□□□□ -0.12
SHROOM3-208ENST00000486758 MCM6Q14566 821 aa14.3□□□□□ -0.12
SHROOM3-208ENST00000486758 SLC4A8Q2Y0W8 1093 aa14.3□□□□□ -0.12
SHROOM3-208ENST00000486758 TERF2Q15554 542 aa14.3□□□□□ -0.12
SHROOM3-208ENST00000486758 MCMDC2Q4G0Z9 681 aa14.3□□□□□ -0.12
SHROOM3-208ENST00000486758 EPC1Q9H2F5 836 aa14.3□□□□□ -0.12
SHROOM3-208ENST00000486758 C19orf44Q9H6X5 657 aa14.3□□□□□ -0.12
SHROOM3-208ENST00000486758 GOLGA8BA8MQT2 603 aa14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 PHACTR2O75167 634 aa14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 SEC31AO94979 1220 aaKnown RBP14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 IGKV5-2P06315 115 aa14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 MARCKSP29966 332 aaPredicted RBP14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 MICU3Q86XE3 530 aa14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 NUP133Q8WUM0 1156 aa14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 CPLX3Q8WVH0 158 aa14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 ANKRD7Q92527 254 aa14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 METTL22Q9BUU2 404 aaPredicted RBP14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 USP32Q8NFA0 1604 aa14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 GNG11P61952 73 aa14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 ST3GAL1Q11201 340 aa14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 LDHAL6AQ6ZMR3 332 aa14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 BICDL1Q6ZP65 573 aa14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 CARD6Q9BX69 1037 aa14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 PAG1Q9NWQ8 432 aa14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 POLA2Q14181 598 aa14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 LRRC24Q50LG9 513 aa14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 UTP14AQ9BVJ6 771 aaKnown RBP14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 CDC42BPGQ6DT37 1551 aa14.29□□□□□ -0.12
SHROOM3-208ENST00000486758 RPS6KB1P23443 525 aa14.28□□□□□ -0.12
SHROOM3-208ENST00000486758 TRIM29Q14134 588 aa14.28□□□□□ -0.12
SHROOM3-208ENST00000486758 TMOD3Q9NYL9 352 aa14.28□□□□□ -0.12
SHROOM3-208ENST00000486758 ABCF2Q9UG63 623 aa14.28□□□□□ -0.12
SHROOM3-208ENST00000486758 U3KPZ7 1027 aaPredicted RBP14.28□□□□□ -0.12
SHROOM3-208ENST00000486758 GOLGA6L1Q8N7Z2 621 aa14.28□□□□□ -0.12
SHROOM3-208ENST00000486758 PUS3Q9BZE2 481 aaKnown RBP14.28□□□□□ -0.12
SHROOM3-208ENST00000486758 TBC1D2BQ9UPU7 963 aa14.28□□□□□ -0.12
SHROOM3-208ENST00000486758 GYS2P54840 703 aa14.28□□□□□ -0.12
SHROOM3-208ENST00000486758 IFIT5Q13325 482 aaKnown RBP14.28□□□□□ -0.12
SHROOM3-208ENST00000486758 CPLX2Q6PUV4 134 aaKnown RBP14.28□□□□□ -0.12
SHROOM3-208ENST00000486758 KRBA2Q6ZNG9 492 aa14.28□□□□□ -0.12
SHROOM3-208ENST00000486758 TMEM87AQ8NBN3 555 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms