RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 CDC25BP30305 580 aa7.62□□□□□ -1.19
VPS41-213ENST00000485955 CCER1Q8TC90 406 aaPredicted RBP7.62□□□□□ -1.19
VPS41-213ENST00000485955 PMEPA1Q969W9 287 aa7.62□□□□□ -1.19
VPS41-213ENST00000485955 USP21Q9UK80 565 aa7.62□□□□□ -1.19
VPS41-213ENST00000485955 BRPF3Q9ULD4 1205 aa7.62□□□□□ -1.19
VPS41-213ENST00000485955 TM4SF5O14894 197 aa7.61□□□□□ -1.19
VPS41-213ENST00000485955 ADAM23O75077 832 aa7.61□□□□□ -1.19
VPS41-213ENST00000485955 BRD1O95696 1058 aa7.61□□□□□ -1.19
VPS41-213ENST00000485955 CDC27P30260 824 aa7.61□□□□□ -1.19
VPS41-213ENST00000485955 IGF2-ASQ6U949 168 aa7.61□□□□□ -1.19
VPS41-213ENST00000485955 GALNT11Q8NCW6 608 aa7.61□□□□□ -1.19
VPS41-213ENST00000485955 SNX29Q8TEQ0 813 aa7.61□□□□□ -1.19
VPS41-213ENST00000485955 ZFYVE28Q9HCC9 887 aa7.61□□□□□ -1.19
VPS41-213ENST00000485955 LATS2Q9NRM7 1088 aa7.61□□□□□ -1.19
VPS41-213ENST00000485955 TPSG1Q9NRR2 321 aa7.61□□□□□ -1.19
VPS41-213ENST00000485955 SOWAHDA6NJG2 315 aa7.6□□□□□ -1.19
VPS41-213ENST00000485955 POLR3DP05423 398 aaPredicted RBP7.6□□□□□ -1.19
VPS41-213ENST00000485955 EPHA1P21709 976 aa7.6□□□□□ -1.19
VPS41-213ENST00000485955 NRG1Q02297 640 aaPredicted RBP7.6□□□□□ -1.19
VPS41-213ENST00000485955 PEAR1Q5VY43 1037 aaPredicted RBP7.6□□□□□ -1.19
VPS41-213ENST00000485955 CACTIN-AS1Q8N1I8 211 aa7.6□□□□□ -1.19
VPS41-213ENST00000485955 OSMRQ99650 979 aa7.6□□□□□ -1.19
VPS41-213ENST00000485955 ZKSCAN3Q9BRR0 538 aa7.6□□□□□ -1.19
VPS41-213ENST00000485955 ADAM19Q9H013 955 aa7.6□□□□□ -1.19
VPS41-213ENST00000485955 GNEQ9Y223 722 aaKnown RBP7.6□□□□□ -1.19
VPS41-213ENST00000485955 PDE2AO00408 941 aaPredicted RBP7.59□□□□□ -1.19
VPS41-213ENST00000485955 NXPE3Q969Y0 559 aa7.59□□□□□ -1.19
VPS41-213ENST00000485955 IGHA2P01877 340 aa7.58□□□□□ -1.2
VPS41-213ENST00000485955 PTPRAP18433 802 aa7.58□□□□□ -1.2
VPS41-213ENST00000485955 USPL1Q5W0Q7 1092 aa7.58□□□□□ -1.2
VPS41-213ENST00000485955 TXNRD3Q86VQ6 643 aa7.58□□□□□ -1.2
VPS41-213ENST00000485955 WFDC12Q8WWY7 111 aa7.58□□□□□ -1.2
VPS41-213ENST00000485955 FAM129BQ96TA1 746 aa7.58□□□□□ -1.2
VPS41-213ENST00000485955 MUC3BQ9H195 1237 aa7.58□□□□□ -1.2
VPS41-213ENST00000485955 KCNK4Q9NYG8 393 aa7.58□□□□□ -1.2
VPS41-213ENST00000485955 AMOTL2Q9Y2J4 779 aa7.58□□□□□ -1.2
VPS41-213ENST00000485955 K7ELQ4 463 aaPredicted RBP7.57□□□□□ -1.2
VPS41-213ENST00000485955 NDUFB5O43674 189 aa7.57□□□□□ -1.2
VPS41-213ENST00000485955 ALX3O95076 343 aa7.57□□□□□ -1.2
VPS41-213ENST00000485955 ITGB7P26010 798 aa7.57□□□□□ -1.2
VPS41-213ENST00000485955 NOS3P29474 1203 aa7.57□□□□□ -1.2
VPS41-213ENST00000485955 IREB2P48200 963 aaKnown RBP7.57□□□□□ -1.2
VPS41-213ENST00000485955 ORC1Q13415 861 aa7.57□□□□□ -1.2
VPS41-213ENST00000485955 RSPO4Q2I0M5 234 aaPredicted RBP7.57□□□□□ -1.2
VPS41-213ENST00000485955 NKAPLQ5M9Q1 402 aa7.57□□□□□ -1.2
VPS41-213ENST00000485955 TMEM102Q8N9M5 508 aaPredicted RBP7.57□□□□□ -1.2
VPS41-213ENST00000485955 SSBP4Q9BWG4 385 aaPredicted RBP7.57□□□□□ -1.2
VPS41-213ENST00000485955 CARD10Q9BWT7 1032 aa7.57□□□□□ -1.2
VPS41-213ENST00000485955 FSCN2O14926 492 aa7.56□□□□□ -1.2
VPS41-213ENST00000485955 EDN3P14138 238 aa7.56□□□□□ -1.2
VPS41-213ENST00000485955 HGSNATQ68CP4 663 aa7.56□□□□□ -1.2
VPS41-213ENST00000485955 MAP4K3Q8IVH8 894 aa7.56□□□□□ -1.2
VPS41-213ENST00000485955 SRA1Q9HD15 236 aaKnown RBP7.56□□□□□ -1.2
VPS41-213ENST00000485955 GPR182O15218 404 aa7.55□□□□□ -1.2
VPS41-213ENST00000485955 DDX3YO15523 660 aaKnown RBP7.55□□□□□ -1.2
VPS41-213ENST00000485955 FOXD4L6Q3SYB3 417 aaPredicted RBP7.55□□□□□ -1.2
VPS41-213ENST00000485955 FOXD4L3Q6VB84 417 aaPredicted RBP7.55□□□□□ -1.2
VPS41-213ENST00000485955 TMEM130Q8N3G9 435 aa7.55□□□□□ -1.2
VPS41-213ENST00000485955 KLHDC7BQ96G42 594 aa7.55□□□□□ -1.2
VPS41-213ENST00000485955 CITED4Q96RK1 184 aa7.55□□□□□ -1.2
VPS41-213ENST00000485955 NIF3L1Q9GZT8 377 aa7.55□□□□□ -1.2
VPS41-213ENST00000485955 SEMA6BQ9H3T3 888 aa7.55□□□□□ -1.2
VPS41-213ENST00000485955 SOX13Q9UN79 622 aa7.55□□□□□ -1.2
VPS41-213ENST00000485955 METTL12A8MUP2 240 aa7.54□□□□□ -1.2
VPS41-213ENST00000485955 F8W735 103 aaPredicted RBP7.54□□□□□ -1.2
VPS41-213ENST00000485955 WISP1O95388 367 aa7.54□□□□□ -1.2
VPS41-213ENST00000485955 CD68P34810 354 aaPredicted RBP7.54□□□□□ -1.2
VPS41-213ENST00000485955 PDE3BQ13370 1112 aa7.54□□□□□ -1.2
VPS41-213ENST00000485955 GALNT12Q8IXK2 581 aa7.54□□□□□ -1.2
VPS41-213ENST00000485955 AGGF1Q8N302 714 aaeCLIP7.54□□□□□ -1.2
VPS41-213ENST00000485955 TMC1Q8TDI8 760 aa7.54□□□□□ -1.2
VPS41-213ENST00000485955 MRPL18Q9H0U6 180 aaKnown RBP7.54□□□□□ -1.2
VPS41-213ENST00000485955 AKTIPQ9H8T0 292 aa7.54□□□□□ -1.2
VPS41-213ENST00000485955 BIN2Q9UBW5 565 aaPredicted RBP7.54□□□□□ -1.2
VPS41-213ENST00000485955 A0A1W2PP55 124 aa7.53□□□□□ -1.2
VPS41-213ENST00000485955 H3BRJ5 948 aa7.53□□□□□ -1.2
VPS41-213ENST00000485955 ADAM11O75078 769 aa7.53□□□□□ -1.2
VPS41-213ENST00000485955 VN1R5Q7Z5H4 357 aa7.53□□□□□ -1.2
VPS41-213ENST00000485955 ASAP3Q8TDY4 903 aa7.53□□□□□ -1.2
VPS41-213ENST00000485955 BSNDQ8WZ55 320 aa7.53□□□□□ -1.2
VPS41-213ENST00000485955 MEGF10Q96KG7 1140 aa7.53□□□□□ -1.2
VPS41-213ENST00000485955 RBCK1Q9BYM8 510 aa7.53□□□□□ -1.2
VPS41-213ENST00000485955 BHLHE41Q9C0J9 482 aaPredicted RBP7.53□□□□□ -1.2
VPS41-213ENST00000485955 SOX1O00570 391 aaPredicted RBP7.52□□□□□ -1.21
VPS41-213ENST00000485955 FAM117BQ6P1L5 589 aa7.52□□□□□ -1.21
VPS41-213ENST00000485955 KLHL23Q8NBE8 558 aa7.52□□□□□ -1.21
VPS41-213ENST00000485955 FOXD4L4Q8WXT5 416 aaPredicted RBP7.52□□□□□ -1.21
VPS41-213ENST00000485955 SLC7A3Q8WY07 619 aa7.52□□□□□ -1.21
VPS41-213ENST00000485955 TP53INP1Q96A56 240 aa7.52□□□□□ -1.21
VPS41-213ENST00000485955 TRAIPQ9BWF2 469 aa7.52□□□□□ -1.21
VPS41-213ENST00000485955 SEC31BQ9NQW1 1179 aa7.52□□□□□ -1.21
VPS41-213ENST00000485955 IVNS1ABPQ9Y6Y0 642 aa7.52□□□□□ -1.21
VPS41-213ENST00000485955 FAM177BA6PVY3 158 aa7.51□□□□□ -1.21
VPS41-213ENST00000485955 DYRK3O43781 588 aa7.51□□□□□ -1.21
VPS41-213ENST00000485955 GRIA4P48058 902 aa7.51□□□□□ -1.21
VPS41-213ENST00000485955 CABP4P57796 275 aa7.51□□□□□ -1.21
VPS41-213ENST00000485955 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.51□□□□□ -1.21
VPS41-213ENST00000485955 TMC7Q7Z402 723 aa7.51□□□□□ -1.21
VPS41-213ENST00000485955 DZIP1LQ8IYY4 767 aaKnown RBP7.51□□□□□ -1.21
VPS41-213ENST00000485955 TCF12Q99081 682 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms