RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 GREM2Q9H772 168 aa17.83■□□□□ 0.44
SQSTM1-208ENST00000485412 XDHP47989 1333 aa17.82■□□□□ 0.44
SQSTM1-208ENST00000485412 TTLL12Q14166 644 aaPredicted RBP17.82■□□□□ 0.44
SQSTM1-208ENST00000485412 KSR2Q6VAB6 950 aa17.82■□□□□ 0.44
SQSTM1-208ENST00000485412 ANKRD18AQ8IVF6 992 aa17.82■□□□□ 0.44
SQSTM1-208ENST00000485412 TTLL11Q8NHH1 800 aa17.82■□□□□ 0.44
SQSTM1-208ENST00000485412 HPS5Q9UPZ3 1129 aa17.82■□□□□ 0.44
SQSTM1-208ENST00000485412 USP17L3A6NCW0 530 aa17.81■□□□□ 0.44
SQSTM1-208ENST00000485412 USP17L4A6NCW7 530 aa17.81■□□□□ 0.44
SQSTM1-208ENST00000485412 DDX58O95786 925 aaKnown RBP17.81■□□□□ 0.44
SQSTM1-208ENST00000485412 PKN2Q16513 984 aaKnown RBP17.81■□□□□ 0.44
SQSTM1-208ENST00000485412 PRPF38BQ5VTL8 546 aaKnown RBP17.81■□□□□ 0.44
SQSTM1-208ENST00000485412 USP17L1Q7RTZ2 530 aa17.81■□□□□ 0.44
SQSTM1-208ENST00000485412 NEURL1BA8MQ27 555 aa17.8■□□□□ 0.44
SQSTM1-208ENST00000485412 UBE2Q2LH0YL09 131 aa17.8■□□□□ 0.44
SQSTM1-208ENST00000485412 ATP2B4P23634 1241 aa17.8■□□□□ 0.44
SQSTM1-208ENST00000485412 MOB2Q70IA6 237 aa17.8■□□□□ 0.44
SQSTM1-208ENST00000485412 PODNQ7Z5L7 613 aa17.8■□□□□ 0.44
SQSTM1-208ENST00000485412 MINPP1Q9UNW1 487 aa17.8■□□□□ 0.44
SQSTM1-208ENST00000485412 CACNA1FO60840 1977 aa17.79■□□□□ 0.44
SQSTM1-208ENST00000485412 TBC1D8O95759 1140 aa17.79■□□□□ 0.44
SQSTM1-208ENST00000485412 KLRK1P26718 216 aa17.79■□□□□ 0.44
SQSTM1-208ENST00000485412 UBE3BQ7Z3V4 1068 aa17.79■□□□□ 0.44
SQSTM1-208ENST00000485412 TXNRD3Q86VQ6 643 aa17.79■□□□□ 0.44
SQSTM1-208ENST00000485412 WWC1Q8IX03 1113 aa17.79■□□□□ 0.44
SQSTM1-208ENST00000485412 ZNF296Q8WUU4 475 aaPredicted RBP17.79■□□□□ 0.44
SQSTM1-208ENST00000485412 FBXW7Q969H0 707 aa17.79■□□□□ 0.44
SQSTM1-208ENST00000485412 NF2P35240 595 aa17.78■□□□□ 0.44
SQSTM1-208ENST00000485412 TWISTNBQ3B726 338 aaPredicted RBP17.78■□□□□ 0.44
SQSTM1-208ENST00000485412 PRAMEF18Q5VWM3 479 aa17.78■□□□□ 0.44
SQSTM1-208ENST00000485412 MED23Q9ULK4 1368 aa17.78■□□□□ 0.44
SQSTM1-208ENST00000485412 NBPF9Q3BBW0 867 aa17.77■□□□□ 0.44
SQSTM1-208ENST00000485412 OGFOD1Q8N543 542 aa17.77■□□□□ 0.44
SQSTM1-208ENST00000485412 CDC5LQ99459 802 aaKnown RBP17.77■□□□□ 0.44
SQSTM1-208ENST00000485412 H7C1W4 665 aa17.76■□□□□ 0.43
SQSTM1-208ENST00000485412 SLC4A2P04920 1241 aa17.76■□□□□ 0.43
SQSTM1-208ENST00000485412 CCT4P50991 539 aaKnown RBP17.76■□□□□ 0.43
SQSTM1-208ENST00000485412 CASP7P55210 303 aa17.76■□□□□ 0.43
SQSTM1-208ENST00000485412 MKRN3Q13064 507 aaKnown RBP17.76■□□□□ 0.43
SQSTM1-208ENST00000485412 DACT2Q5SW24 774 aa17.76■□□□□ 0.43
SQSTM1-208ENST00000485412 STK31Q9BXU1 1019 aa17.76■□□□□ 0.43
SQSTM1-208ENST00000485412 BSDC1Q9NW68 430 aaPredicted RBP17.76■□□□□ 0.43
SQSTM1-208ENST00000485412 GPR25O00155 361 aa17.75■□□□□ 0.43
SQSTM1-208ENST00000485412 CCDC27Q2M243 656 aa17.75■□□□□ 0.43
SQSTM1-208ENST00000485412 MYO3BQ8WXR4 1341 aa17.74■□□□□ 0.43
SQSTM1-208ENST00000485412 FANCIQ9NVI1 1328 aa17.74■□□□□ 0.43
SQSTM1-208ENST00000485412 SNAP23O00161 211 aa17.74■□□□□ 0.43
SQSTM1-208ENST00000485412 TM4SF4P48230 202 aa17.74■□□□□ 0.43
SQSTM1-208ENST00000485412 NEXNQ0ZGT2 675 aa17.74■□□□□ 0.43
SQSTM1-208ENST00000485412 SREBF2Q12772 1141 aa17.74■□□□□ 0.43
SQSTM1-208ENST00000485412 GCKRQ14397 625 aa17.74■□□□□ 0.43
SQSTM1-208ENST00000485412 WNT10BO00744 389 aa17.73■□□□□ 0.43
SQSTM1-208ENST00000485412 SASH1O94885 1247 aa17.73■□□□□ 0.43
SQSTM1-208ENST00000485412 ITGA6P23229 1130 aa17.73■□□□□ 0.43
SQSTM1-208ENST00000485412 FLIIQ13045 1269 aa17.73■□□□□ 0.43
SQSTM1-208ENST00000485412 FBXO46Q6PJ61 603 aaPredicted RBP17.73■□□□□ 0.43
SQSTM1-208ENST00000485412 ARMC9Q7Z3E5 817 aa17.73■□□□□ 0.43
SQSTM1-208ENST00000485412 SALL2Q9Y467 1007 aaPredicted RBP17.73■□□□□ 0.43
SQSTM1-208ENST00000485412 FKTNO75072 461 aa17.72■□□□□ 0.43
SQSTM1-208ENST00000485412 PRKG1Q13976 671 aa17.72■□□□□ 0.43
SQSTM1-208ENST00000485412 NOM1Q5C9Z4 860 aaKnown RBP17.72■□□□□ 0.43
SQSTM1-208ENST00000485412 ECM29Q5VYK3 1845 aa17.72■□□□□ 0.43
SQSTM1-208ENST00000485412 STRIP1Q5VSL9 837 aa17.71■□□□□ 0.43
SQSTM1-208ENST00000485412 APOBEC3FQ8IUX4 373 aaKnown RBP17.71■□□□□ 0.43
SQSTM1-208ENST00000485412 PLA2G12BQ9BX93 195 aa17.71■□□□□ 0.43
SQSTM1-208ENST00000485412 CHMP4AQ9BY43 222 aa17.71■□□□□ 0.43
SQSTM1-208ENST00000485412 COA1Q9GZY4 146 aa17.71■□□□□ 0.43
SQSTM1-208ENST00000485412 IL16Q14005 1332 aa17.71■□□□□ 0.42
SQSTM1-208ENST00000485412 F6X3S4 739 aa17.7■□□□□ 0.42
SQSTM1-208ENST00000485412 CSF1RP07333 972 aa17.7■□□□□ 0.42
SQSTM1-208ENST00000485412 PTPN12Q05209 780 aaKnown RBP17.7■□□□□ 0.42
SQSTM1-208ENST00000485412 FKBP5Q13451 457 aaPredicted RBP17.7■□□□□ 0.42
SQSTM1-208ENST00000485412 DNAAF4Q8WXU2 420 aa17.7■□□□□ 0.42
SQSTM1-208ENST00000485412 SPINK5Q9NQ38 1064 aaPredicted RBP17.7■□□□□ 0.42
SQSTM1-208ENST00000485412 ZNF804BA4D1E1 1349 aa17.7■□□□□ 0.42
SQSTM1-208ENST00000485412 IRS2Q9Y4H2 1338 aa17.7■□□□□ 0.42
SQSTM1-208ENST00000485412 VAMP4O75379 141 aa17.69■□□□□ 0.42
SQSTM1-208ENST00000485412 IGHMBP2P38935 993 aaKnown RBP17.69■□□□□ 0.42
SQSTM1-208ENST00000485412 MMP14P50281 582 aa17.69■□□□□ 0.42
SQSTM1-208ENST00000485412 CHRNDQ07001 517 aa17.69■□□□□ 0.42
SQSTM1-208ENST00000485412 KIAA0825Q8IV33 1275 aa17.69■□□□□ 0.42
SQSTM1-208ENST00000485412 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.69■□□□□ 0.42
SQSTM1-208ENST00000485412 ANGEL1Q9UNK9 670 aaKnown RBP17.69■□□□□ 0.42
SQSTM1-208ENST00000485412 FZD1Q9UP38 647 aa17.69■□□□□ 0.42
SQSTM1-208ENST00000485412 LEMD3Q9Y2U8 911 aa17.69■□□□□ 0.42
SQSTM1-208ENST00000485412 ALDH1A1P00352 501 aa17.68■□□□□ 0.42
SQSTM1-208ENST00000485412 GTF2IP78347 998 aa17.68■□□□□ 0.42
SQSTM1-208ENST00000485412 FOXO4P98177 505 aa17.68■□□□□ 0.42
SQSTM1-208ENST00000485412 EXOSC9Q06265 439 aaKnown RBP17.68■□□□□ 0.42
SQSTM1-208ENST00000485412 TTLL5Q6EMB2 1281 aa17.68■□□□□ 0.42
SQSTM1-208ENST00000485412 HELBQ8NG08 1087 aaPredicted RBP17.68■□□□□ 0.42
SQSTM1-208ENST00000485412 LINS1Q8NG48 757 aa17.68■□□□□ 0.42
SQSTM1-208ENST00000485412 CFHR5Q9BXR6 569 aa17.68■□□□□ 0.42
SQSTM1-208ENST00000485412 PCDHAC2Q9Y5I4 1007 aa17.68■□□□□ 0.42
SQSTM1-208ENST00000485412 TAF5LO75529 589 aa17.67■□□□□ 0.42
SQSTM1-208ENST00000485412 EPHA10Q5JZY3 1008 aa17.67■□□□□ 0.42
SQSTM1-208ENST00000485412 SPRYD7Q5W111 196 aa17.67■□□□□ 0.42
SQSTM1-208ENST00000485412 CERS5Q8N5B7 392 aa17.67■□□□□ 0.42
SQSTM1-208ENST00000485412 R3HDMLQ9H3Y0 253 aa17.67■□□□□ 0.42
SQSTM1-208ENST00000485412 MRS2Q9HD23 443 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms