RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 LRRC2Q9BYS8 371 aa17.26■□□□□ 0.35
CHD3-211ENST00000481999 AKAP2Q9Y2D5 859 aa17.26■□□□□ 0.35
CHD3-211ENST00000481999 MAST3O60307 1309 aa17.26■□□□□ 0.35
CHD3-211ENST00000481999 CCDC83Q8IWF9 413 aa17.26■□□□□ 0.35
CHD3-211ENST00000481999 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.26■□□□□ 0.35
CHD3-211ENST00000481999 CCNL1Q9UK58 526 aaPredicted RBP17.26■□□□□ 0.35
CHD3-211ENST00000481999 CYP46A1Q9Y6A2 500 aa17.26■□□□□ 0.35
CHD3-211ENST00000481999 SPEF2Q9C093 1822 aa17.26■□□□□ 0.35
CHD3-211ENST00000481999 MYO5AQ9Y4I1 1855 aaKnown RBP17.26■□□□□ 0.35
CHD3-211ENST00000481999 ZNF445P59923 1031 aa17.25■□□□□ 0.35
CHD3-211ENST00000481999 ME3Q16798 604 aa17.25■□□□□ 0.35
CHD3-211ENST00000481999 TTLL5Q6EMB2 1281 aa17.25■□□□□ 0.35
CHD3-211ENST00000481999 DDX60Q8IY21 1712 aaKnown RBP17.25■□□□□ 0.35
CHD3-211ENST00000481999 RREB1Q92766 1687 aa17.25■□□□□ 0.35
CHD3-211ENST00000481999 RPAP1Q9BWH6 1393 aaPredicted RBP17.25■□□□□ 0.35
CHD3-211ENST00000481999 TPCN1Q9ULQ1 816 aa17.25■□□□□ 0.35
CHD3-211ENST00000481999 UTRNP46939 3433 aa17.25■□□□□ 0.35
CHD3-211ENST00000481999 STOX1Q6ZVD7 989 aa17.24■□□□□ 0.35
CHD3-211ENST00000481999 TRIM44Q96DX7 344 aaPredicted RBP17.24■□□□□ 0.35
CHD3-211ENST00000481999 INTS4Q96HW7 963 aaKnown RBP17.24■□□□□ 0.35
CHD3-211ENST00000481999 PUS7LQ9H0K6 701 aaKnown RBP17.24■□□□□ 0.35
CHD3-211ENST00000481999 LIMCH1Q9UPQ0 1083 aa17.24■□□□□ 0.35
CHD3-211ENST00000481999 WASHC4Q2M389 1173 aa17.24■□□□□ 0.35
CHD3-211ENST00000481999 ZMYM1Q5SVZ6 1142 aa17.24■□□□□ 0.35
CHD3-211ENST00000481999 MPHOSPH8Q99549 860 aa17.24■□□□□ 0.35
CHD3-211ENST00000481999 FOXP2O15409 715 aa17.23■□□□□ 0.35
CHD3-211ENST00000481999 NASPP49321 788 aaPredicted RBP17.23■□□□□ 0.35
CHD3-211ENST00000481999 CCDC102BQ68D86 513 aa17.23■□□□□ 0.35
CHD3-211ENST00000481999 IQSEC3Q9UPP2 1182 aaPredicted RBP17.23■□□□□ 0.35
CHD3-211ENST00000481999 RNF113AO15541 343 aaKnown RBP17.23■□□□□ 0.35
CHD3-211ENST00000481999 NCLP19338 710 aaKnown RBP17.23■□□□□ 0.35
CHD3-211ENST00000481999 STK3Q13188 491 aa17.23■□□□□ 0.35
CHD3-211ENST00000481999 CAVIN1Q6NZI2 390 aaKnown RBP17.23■□□□□ 0.35
CHD3-211ENST00000481999 FBXO3Q9UK99 471 aa17.23■□□□□ 0.35
CHD3-211ENST00000481999 AKAP11Q9UKA4 1901 aa17.23■□□□□ 0.35
CHD3-211ENST00000481999 ABCC12Q96J65 1359 aa17.23■□□□□ 0.35
CHD3-211ENST00000481999 PRPF40AO75400 957 aaKnown RBP17.22■□□□□ 0.35
CHD3-211ENST00000481999 HSPD1P10809 573 aaKnown RBP17.22■□□□□ 0.35
CHD3-211ENST00000481999 ANP32BQ92688 251 aaKnown RBP17.22■□□□□ 0.35
CHD3-211ENST00000481999 LRRC4BQ9NT99 713 aa17.22■□□□□ 0.35
CHD3-211ENST00000481999 ESPNB1AK53 854 aa17.22■□□□□ 0.35
CHD3-211ENST00000481999 CCDC173Q0VFZ6 552 aa17.22■□□□□ 0.35
CHD3-211ENST00000481999 ZSCAN23Q3MJ62 389 aa17.22■□□□□ 0.35
CHD3-211ENST00000481999 PARP10Q53GL7 1025 aa17.22■□□□□ 0.35
CHD3-211ENST00000481999 BLOC1S2Q6QNY1 142 aa17.22■□□□□ 0.35
CHD3-211ENST00000481999 CHST3Q7LGC8 479 aa17.22■□□□□ 0.35
CHD3-211ENST00000481999 PIH1D3Q9NQM4 214 aaKnown RBP17.22■□□□□ 0.35
CHD3-211ENST00000481999 HAND2P61296 217 aa17.21■□□□□ 0.35
CHD3-211ENST00000481999 TOB2Q14106 344 aaPredicted RBP17.21■□□□□ 0.35
CHD3-211ENST00000481999 BRWD3Q6RI45 1802 aa17.21■□□□□ 0.35
CHD3-211ENST00000481999 IDH1O75874 414 aaKnown RBP17.21■□□□□ 0.35
CHD3-211ENST00000481999 RNF20Q5VTR2 975 aa17.21■□□□□ 0.35
CHD3-211ENST00000481999 GDPD2Q9HCC8 539 aa17.21■□□□□ 0.35
CHD3-211ENST00000481999 PPFIA3O75145 1194 aa17.2■□□□□ 0.34
CHD3-211ENST00000481999 BRD1O95696 1058 aa17.2■□□□□ 0.34
CHD3-211ENST00000481999 RPS6KB1P23443 525 aa17.2■□□□□ 0.34
CHD3-211ENST00000481999 BCAMP50895 628 aa17.2■□□□□ 0.34
CHD3-211ENST00000481999 CCDC152Q4G0S7 254 aa17.2■□□□□ 0.34
CHD3-211ENST00000481999 TPRNQ4KMQ1 711 aa17.2■□□□□ 0.34
CHD3-211ENST00000481999 ARHGEF1Q92888 912 aaKnown RBP17.2■□□□□ 0.34
CHD3-211ENST00000481999 PPP1R9BQ96SB3 815 aa17.2■□□□□ 0.34
CHD3-211ENST00000481999 TM6SF1Q9BZW5 370 aa17.2■□□□□ 0.34
CHD3-211ENST00000481999 ZNF652Q9Y2D9 606 aa17.2■□□□□ 0.34
CHD3-211ENST00000481999 FGFR2P21802 821 aa17.2■□□□□ 0.34
CHD3-211ENST00000481999 GTF2E1P29083 439 aaPredicted RBP17.2■□□□□ 0.34
CHD3-211ENST00000481999 PUM3Q15397 648 aaKnown RBP17.2■□□□□ 0.34
CHD3-211ENST00000481999 CNTNAP4Q9C0A0 1308 aa17.2■□□□□ 0.34
CHD3-211ENST00000481999 CHRNDQ07001 517 aa17.19■□□□□ 0.34
CHD3-211ENST00000481999 RASGRF1Q13972 1273 aa17.19■□□□□ 0.34
CHD3-211ENST00000481999 HELLSQ9NRZ9 838 aa17.19■□□□□ 0.34
CHD3-211ENST00000481999 WWC3Q9ULE0 1092 aa17.19■□□□□ 0.34
CHD3-211ENST00000481999 RFX7Q2KHR2 1363 aa17.19■□□□□ 0.34
CHD3-211ENST00000481999 BCORQ6W2J9 1755 aa17.19■□□□□ 0.34
CHD3-211ENST00000481999 CICQ96RK0 1608 aaPredicted RBP17.19■□□□□ 0.34
CHD3-211ENST00000481999 ILDR2Q71H61 639 aa17.19■□□□□ 0.34
CHD3-211ENST00000481999 KRT27Q7Z3Y8 459 aa17.19■□□□□ 0.34
CHD3-211ENST00000481999 CELF1Q92879 486 aaKnown RBP17.19■□□□□ 0.34
CHD3-211ENST00000481999 LRP5O75197 1615 aa17.19■□□□□ 0.34
CHD3-211ENST00000481999 SLC9C2Q5TAH2 1124 aa17.18■□□□□ 0.34
CHD3-211ENST00000481999 GPT2Q8TD30 523 aa17.18■□□□□ 0.34
CHD3-211ENST00000481999 NEK1Q96PY6 1258 aa17.18■□□□□ 0.34
CHD3-211ENST00000481999 HMG20BQ9P0W2 317 aa17.18■□□□□ 0.34
CHD3-211ENST00000481999 RPS6KA4O75676 772 aa17.18■□□□□ 0.34
CHD3-211ENST00000481999 MBD3O95983 291 aa17.18■□□□□ 0.34
CHD3-211ENST00000481999 FAM196AQ6ZSG2 479 aa17.18■□□□□ 0.34
CHD3-211ENST00000481999 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.18■□□□□ 0.34
CHD3-211ENST00000481999 LPIN2Q92539 896 aa17.18■□□□□ 0.34
CHD3-211ENST00000481999 DENND2AQ9ULE3 1009 aa17.18■□□□□ 0.34
CHD3-211ENST00000481999 NSFL1CQ9UNZ2 370 aaKnown RBP17.18■□□□□ 0.34
CHD3-211ENST00000481999 MROH5Q6ZUA9 1318 aa17.18■□□□□ 0.34
CHD3-211ENST00000481999 GJB2P29033 226 aa17.17■□□□□ 0.34
CHD3-211ENST00000481999 IGHMBP2P38935 993 aaKnown RBP17.17■□□□□ 0.34
CHD3-211ENST00000481999 CLEC4GQ6UXB4 293 aa17.17■□□□□ 0.34
CHD3-211ENST00000481999 RTCBQ9Y3I0 505 aaKnown RBP17.17■□□□□ 0.34
CHD3-211ENST00000481999 U3KPZ7 1027 aaPredicted RBP17.17■□□□□ 0.34
CHD3-211ENST00000481999 TCHHQ07283 1943 aa17.17■□□□□ 0.34
CHD3-211ENST00000481999 NHSQ6T4R5 1651 aa17.17■□□□□ 0.34
CHD3-211ENST00000481999 PSMA5P28066 241 aa17.17■□□□□ 0.34
CHD3-211ENST00000481999 NKX2-3Q8TAU0 364 aa17.17■□□□□ 0.34
CHD3-211ENST00000481999 NARFQ9UHQ1 456 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms